Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005133.1 Hibiscus syriacus cultivar Beakdansim tig00011556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89711

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
374--423
10
5.4
10
81
18
72
10
10
20
60
1.57
387--419
16
2.1
16
100
0
66
6
12
24
57
1.57
420--473
28
2.0
27
82
10
65
46
12
11
29
1.77
1283--1335
24
2.2
24
86
0
70
54
9
9
26
1.63
6514--6613
35
2.7
35
84
6
110
38
15
15
32
1.88
6760--6787
11
2.5
11
100
0
56
7
7
0
85
0.73
7175--7324
72
2.1
72
81
12
175
26
9
3
61
1.42
7242--7291
21
2.3
22
77
19
52
30
6
0
64
1.18
7183--7348
72
2.4
69
81
13
173
25
7
2
64
1.33
7309--7397
15
6.1
14
76
14
74
17
1
3
77
0.97
7325--7394
5
14.4
5
79
11
74
17
1
4
77
1.01
10397--10470
34
2.2
32
81
13
80
77
6
14
1
1.05
11975--12079
36
2.9
37
89
1
158
23
23
12
40
1.89
12733--13597
106
8.3
105
82
7
912
32
25
20
21
1.98
12733--13594
204
4.1
205
83
5
1000
32
25
20
21
1.98
14058--14157
35
2.7
35
84
6
110
38
15
15
32
1.88
14304--14333
12
2.5
12
100
0
60
6
6
0
86
0.70
14868--14956
15
6.1
14
76
14
74
17
1
3
77
0.97
14884--14953
5
14.4
5
79
11
74
17
1
4
77
1.01
14796--14953
30
5.0
30
71
16
92
22
5
2
70
1.19
27207--27239
2
16.5
2
100
0
66
0
51
0
48
1.00
28870--29061
48
4.0
48
89
4
289
29
27
26
17
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28901--29047
27
5.9
27
67
20
122
29
27
26
16
1.97
29016--29061
21
2.2
21
92
0
74
28
28
26
17
1.98
29033--29195
84
1.9
84
89
0
254
29
31
15
23
1.96
29158--29221
33
1.9
33
93
0
110
32
39
3
25
1.71
29076--29309
117
2.0
117
85
5
312
31
32
11
24
1.90
29215--29393
84
2.1
84
81
8
204
30
30
13
25
1.94
29033--29413
201
1.9
201
86
2
541
29
31
13
24
1.94
29359--29492
66
2.0
66
85
2
180
25
41
8
24
1.82
29359--29471
33
3.4
33
93
0
181
25
44
7
22
1.80
29458--29642
84
2.2
84
87
3
257
27
29
15
27
1.96
29689--29734
21
2.2
21
84
7
58
23
30
26
19
1.98
29710--29875
84
2.0
84
92
0
278
25
29
18
26
1.98
32070--32144
29
2.6
29
84
0
96
18
40
26
14
1.90
32071--32158
29
3.0
29
84
0
95
20
37
30
11
1.88
32375--32432
10
5.6
10
73
15
55
10
20
46
22
1.81
32452--32538
29
3.0
29
84
0
120
14
29
39
16
1.88
46489--46530
18
2.3
18
100
0
84
45
23
4
26
1.73
51092--51152
23
2.7
23
76
0
68
19
27
26
26
1.99
57192--57236
21
2.1
21
87
0
63
31
28
24
15
1.96
57814--57848
18
1.9
18
88
11
54
54
5
17
22
1.64
57905--57948
22
2.0
22
86
4
63
45
0
22
31
1.53
58172--58215
2
22.0
2
100
0
88
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58860--59312
149
3.0
149
98
0
861
27
17
20
34
1.95
59291--59335
23
2.0
23
86
0
63
20
24
28
26
1.99
63171--63205
18
1.9
18
88
11
54
54
5
17
22
1.64
63262--63305
22
2.0
22
86
4
63
45
0
22
31
1.53
63532--63557
2
13.0
2
100
0
52
50
0
0
50
1.00
64201--64653
149
3.0
149
97
0
843
27
17
20
35
1.94
64632--64676
23
2.0
23
86
0
63
20
24
28
26
1.99
67248--67312
2
32.5
2
100
0
130
49
0
0
50
1.00
67380--67456
33
2.3
33
95
0
136
42
0
28
28
1.56
67850--68008
64
2.5
64
81
9
182
31
22
17
28
1.96
83501--83541
16
2.6
16
88
3
57
39
19
4
36
1.73
83786--83914
24
5.5
23
83
4
123
57
17
12
12
1.65
83786--83919
47
2.8
47
81
1
133
57
17
11
13
1.65
84086--84129
14
3.4
14
70
23
51
56
18
11
13
1.66

Tables:   1

The End!