Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005134.1 Hibiscus syriacus cultivar Beakdansim tig00011558_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97707

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5820--5871
22
2.4
21
87
9
77
61
17
11
9
1.55
10478--10532
24
2.3
25
81
6
60
29
21
16
32
1.95
16455--16497
14
3.1
14
86
3
52
27
39
0
32
1.57
18569--18610
22
1.9
22
85
9
59
40
0
19
40
1.51
19511--19564
15
3.6
15
100
0
108
18
27
0
53
1.45
28723--28773
19
2.6
20
90
3
77
43
5
15
35
1.71
31644--31695
10
5.0
10
81
4
50
0
19
1
78
0.84
31642--31696
18
3.0
18
85
15
69
0
20
3
76
0.94
32401--32451
19
2.6
20
90
3
77
43
5
15
35
1.71
35615--35725
35
3.2
35
80
2
134
32
3
35
28
1.75
38148--38198
19
2.6
20
90
3
77
43
5
15
35
1.71
42329--42379
19
2.6
20
90
3
77
43
5
15
35
1.71
45854--45878
8
3.1
8
100
0
50
76
0
24
0
0.80
61749--61812
33
2.0
32
82
14
78
64
0
21
14
1.29
61783--61822
21
1.9
21
85
10
55
60
0
27
12
1.33
65001--65051
20
2.6
20
87
3
68
33
17
5
43
1.73
65404--65447
22
2.0
21
86
4
61
38
34
2
25
1.68
65746--65795
18
2.8
17
88
11
66
76
6
16
2
1.08
65746--65800
21
2.8
19
77
22
53
76
5
16
1
1.06
65766--65804
18
2.2
18
86
9
53
76
2
17
2
1.01
69132--69182
20
2.6
20
87
3
68
33
17
5
43
1.73
69535--69578
22
2.0
21
86
4
61
38
34
2
25
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75317--75362
22
2.1
21
84
11
58
47
32
4
15
1.65
76095--76133
15
2.5
15
87
4
60
58
0
25
15
1.37
76279--76381
35
3.0
33
85
4
134
31
3
38
26
1.74
79854--79903
19
2.5
20
87
3
66
46
6
14
34
1.69
87283--87406
54
2.3
54
85
5
160
21
32
16
29
1.96
89957--90041
2
43.5
2
88
9
131
49
1
1
48
1.16
91233--91275
22
2.0
22
85
0
59
34
37
2
25
1.69
91578--91635
17
3.4
17
76
11
64
81
5
10
3
0.97
91578--91635
18
3.3
18
80
7
75
81
5
10
3
0.97
91576--91640
18
3.7
18
75
8
62
80
6
10
3
1.01
96106--96144
16
2.4
16
83
8
53
82
0
12
5
0.83

Tables:   1

The End!