Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005135.1 Hibiscus syriacus cultivar Beakdansim tig00011559_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55282

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3917--3959
20
2.2
20
87
4
61
34
9
6
48
1.62
6122--6176
23
2.3
26
84
15
82
60
10
18
10
1.59
6176--6204
5
6.0
5
92
8
51
79
0
20
0
0.74
8933--8962
13
2.4
13
94
5
53
43
0
30
26
1.55
10809--10939
65
2.0
65
90
0
208
22
25
25
27
2.00
12030--12068
12
3.2
12
85
7
51
74
5
20
0
1.01
13579--13647
33
2.1
33
83
5
86
31
1
36
30
1.67
13633--13729
13
8.0
12
72
22
62
28
3
37
30
1.73
13618--13730
36
3.2
36
92
1
174
27
3
36
32
1.74
18089--18157
33
2.1
33
83
5
86
31
1
36
30
1.67
18143--18239
13
8.0
12
72
22
62
28
3
37
30
1.73
18128--18240
36
3.2
36
92
1
174
27
3
36
32
1.74
20225--20293
33
2.1
33
83
5
86
31
1
36
30
1.67
20279--20375
13
8.0
12
72
22
62
28
3
37
30
1.73
20264--20376
36
3.2
36
92
1
174
27
3
36
32
1.74
29446--29489
15
2.9
15
80
16
54
2
15
2
79
0.93
29896--29964
33
2.1
33
83
5
86
31
1
36
30
1.67
29950--30046
13
8.0
12
72
22
62
28
3
37
30
1.73
29935--30047
36
3.2
36
92
1
174
27
3
36
32
1.74
30684--30735
19
2.6
21
87
6
72
46
7
15
30
1.74
34713--34764
19
2.6
21
87
6
72
46
7
15
30
1.74
42720--42822
36
2.9
36
92
1
163
29
38
3
28
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45194--45237
22
2.0
21
86
4
61
38
34
2
25
1.68
45556--45610
13
4.2
12
78
17
56
76
3
16
3
1.07
45588--45627
19
2.1
19
86
9
55
77
0
12
10
0.99
49573--49616
22
2.0
21
86
4
61
38
34
2
25
1.68
51865--51928
17
3.7
17
69
22
53
78
3
15
3
1.01
51865--51929
26
2.5
25
77
20
71
76
3
15
4
1.07
54988--55056
31
2.2
32
97
2
131
30
17
21
30
1.96

Tables:   1

The End!