Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005137.1 Hibiscus syriacus cultivar Beakdansim tig00011567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64471

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1960--2217
81
3.2
82
86
4
357
29
26
12
32
1.92
2169--2480
68
4.6
68
88
0
437
30
24
14
31
1.94
3318--3358
21
2.0
21
100
0
82
39
14
12
34
1.84
5394--5490
44
2.2
44
96
0
176
38
8
9
44
1.67
8453--8481
14
2.0
15
93
6
51
48
0
0
51
1.00
8572--8656
16
5.2
16
74
13
66
36
2
2
58
1.24
9705--9782
40
2.0
40
89
0
120
32
16
14
37
1.89
9858--9912
16
3.4
16
92
0
92
30
0
1
67
1.01
9853--9927
32
2.3
32
82
13
91
30
4
2
62
1.27
9933--9973
21
2.0
21
85
9
57
48
4
2
43
1.37
11257--11331
32
2.4
32
82
4
82
29
6
8
56
1.54
12167--12523
43
8.3
43
78
9
306
51
5
16
26
1.66
12184--12541
129
2.8
129
77
9
354
51
5
15
27
1.66
12184--12523
87
4.0
82
77
9
322
50
5
16
26
1.68
12511--12562
23
2.3
25
78
18
60
65
0
3
30
1.10
13033--13073
17
2.2
20
87
12
61
53
4
7
34
1.50
20086--20193
51
2.1
53
94
3
193
39
14
16
28
1.88
28541--28715
95
1.8
95
93
0
305
38
11
15
34
1.83
32633--32671
21
2.0
21
85
10
55
58
0
0
41
0.98
34153--34218
23
2.9
23
97
0
123
27
22
15
34
1.94
34178--34263
38
2.3
38
95
0
154
29
23
13
33
1.93
39629--39696
33
2.1
33
88
5
102
41
10
20
27
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48994--49074
24
3.5
24
70
20
75
22
24
23
29
1.99
50601--50644
21
2.1
21
86
0
61
9
40
15
34
1.79
51788--51879
45
2.0
46
91
2
150
30
25
17
27
1.97
51801--51902
46
2.2
45
81
6
107
31
26
17
24
1.97
55293--55383
46
2.0
45
93
4
157
30
26
17
25
1.97
57913--58046
66
2.0
66
88
0
196
44
10
14
29
1.79
58776--58818
13
3.2
13
90
3
68
60
0
30
9
1.28

Tables:   1

The End!