genome.fa.s5138.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005138.1 Hibiscus syriacus cultivar Beakdansim tig00011574_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81849

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1141--1185	2	23.5	2	91	8	76	48	0	0	51	1.00
2830--2896	27	2.4	27	82	2	80	68	10	8	11	1.39
2757--2972	114	1.9	118	85	5	307	58	13	11	16	1.63
3300--3534	92	2.6	90	86	4	303	54	15	14	16	1.71
11826--11865	21	1.9	21	94	0	71	32	30	15	22	1.94
11891--11929	19	2.1	19	90	0	60	20	35	15	28	1.93
11826--12038	64	3.3	64	79	9	195	31	25	15	27	1.95
20041--20113	33	2.2	34	90	4	114	34	31	13	20	1.92
21951--21996	14	3.0	16	73	20	53	47	8	6	36	1.60
22257--22288	16	2.0	16	93	0	55	78	0	3	18	0.89
22392--22429	16	2.4	17	82	13	53	42	2	21	34	1.67
22384--22475	39	2.4	39	79	0	103	38	5	22	33	1.77
23828--23860	16	1.9	18	88	11	52	36	0	3	60	1.12
27443--27472	2	15.0	2	100	0	60	50	0	0	50	1.00
31179--31229	21	2.3	23	80	16	63	35	13	3	47	1.62
31183--31233	20	2.5	21	81	12	61	29	17	3	49	1.65
33140--33790	184	3.6	183	82	9	795	45	12	15	27	1.82
33407--33742	169	2.0	169	87	2	487	45	13	15	25	1.83
34079--34121	20	2.0	21	86	8	61	39	6	16	37	1.75
34221--34278	23	2.5	23	94	0	98	34	15	6	43	1.74
34144--34305	87	1.9	87	86	0	234	33	11	9	45	1.73
35537--35569	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35648--35672	2	12.5	2	100	0	50	52	0	0	48	1.00
37044--37275	106	2.2	107	88	0	331	21	17	25	35	1.95
37594--37780	67	2.7	67	83	3	230	35	12	22	29	1.91
37735--37851	35	3.4	35	89	5	170	31	11	18	38	1.86
37891--38519	37	18.4	36	67	22	203	37	11	19	31	1.88
38019--38077	30	2.0	30	86	6	84	32	10	16	40	1.82
38032--38311	100	2.8	101	93	2	465	36	12	19	31	1.89
38096--38481	166	2.3	166	91	4	623	36	12	20	31	1.89
38198--38377	66	2.8	65	90	5	276	35	12	21	31	1.90
38261--38508	102	2.4	105	89	4	378	35	12	20	31	1.90
39697--40050	183	1.9	183	96	0	654	30	21	20	26	1.98
44062--44112	21	2.4	21	84	12	61	68	1	7	21	1.25
44284--44336	2	26.5	2	100	0	106	50	0	0	49	1.00
46417--46556	45	3.1	45	85	3	149	27	29	22	21	1.99
46435--46569	45	3.0	45	88	3	166	26	28	22	21	1.99
47587--47665	41	1.9	41	84	5	106	27	17	17	36	1.93
47675--47742	31	2.2	31	100	0	136	20	20	25	33	1.97
47692--47743	15	3.4	15	70	15	52	17	21	26	34	1.95
49364--49444	27	3.0	26	82	10	85	41	4	0	53	1.22
49363--49444	24	3.2	25	81	8	85	42	4	0	52	1.23
49435--49473	20	1.9	21	85	15	55	53	2	2	41	1.28
49668--49715	17	2.9	16	84	9	60	22	0	4	72	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49666--49707	15	2.7	15	85	14	50	23	0	4	71	1.05
50719--50780	27	2.3	27	80	8	63	67	1	1	29	1.09
50853--50914	22	2.7	23	80	9	65	66	0	1	32	1.02
54805--55162	54	6.6	54	86	0	486	37	20	15	26	1.92
61700--61885	54	3.4	54	91	1	293	36	22	15	26	1.94
68890--68942	20	2.7	20	100	0	106	33	18	20	26	1.96
70386--70425	21	1.9	21	94	0	71	27	22	25	25	2.00
70451--70493	22	2.0	22	90	0	68	23	23	16	37	1.94
70451--70494	12	3.8	12	82	11	56	25	22	15	36	1.94
73810--73918	31	3.5	31	77	6	112	28	17	16	37	1.91
74092--74132	2	20.5	2	100	0	82	48	0	0	51	1.00
77278--77303	13	2.0	13	100	0	52	23	23	38	15	1.92
79073--79131	23	2.6	23	81	10	75	28	16	15	38	1.89

Tables:   1

The End!