genome.fa.s5139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005139.1 Hibiscus syriacus cultivar Beakdansim tig00011575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80266

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724--781	17	3.5	17	77	15	59	5	17	3	74	1.15
1439--1489	19	2.6	20	90	3	77	43	5	15	35	1.71
4843--4867	5	5.0	5	100	0	50	0	20	0	80	0.72
5557--5607	19	2.6	20	90	3	77	43	5	15	35	1.71
9698--9748	19	2.6	20	90	3	77	43	5	15	35	1.71
14779--14811	13	2.6	13	95	4	59	42	0	30	27	1.56
16841--16869	15	2.0	15	93	6	51	75	3	20	0	0.94
23952--23988	14	2.7	14	91	4	58	24	40	0	35	1.55
25880--25923	22	2.0	21	86	4	61	25	2	34	38	1.68
30900--30945	23	2.0	23	83	8	58	36	6	8	47	1.60
32655--32758	33	3.1	33	82	9	95	30	36	1	30	1.69
34519--34666	36	4.2	36	91	2	228	31	35	4	28	1.76
34519--34652	13	11.3	11	69	23	69	30	35	3	29	1.75
34926--35077	76	2.0	76	100	0	304	27	27	19	25	1.99
36280--36304	8	3.1	8	100	0	50	76	0	24	0	0.80
39198--39243	23	2.0	23	83	8	58	36	6	8	47	1.60
44047--44089	23	1.9	21	81	13	50	32	18	13	34	1.90
48566--48591	13	2.0	13	100	0	52	46	38	15	0	1.46
49850--49929	35	2.3	33	83	10	90	30	37	3	28	1.75
55559--55627	33	2.1	33	83	5	86	30	36	1	31	1.67
56422--56597	36	4.9	36	94	0	300	28	3	36	31	1.76
56492--56595	23	4.4	23	67	27	74	27	4	36	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56440--56599	11	13.3	12	70	23	83	28	3	36	31	1.75
61382--61410	15	2.0	15	93	6	51	75	3	20	0	0.94
62906--62953	24	2.0	25	83	4	62	50	12	25	12	1.75
69838--69906	35	1.9	36	85	2	95	31	2	34	30	1.73
72116--72156	21	1.9	22	85	14	59	58	0	26	14	1.37
72301--72384	35	2.4	36	82	4	100	30	2	36	29	1.70
76233--76279	25	2.0	24	84	16	62	0	17	8	74	1.05
76655--76738	35	2.4	36	82	4	100	30	2	36	29	1.70
78715--78742	14	2.0	14	100	0	56	21	42	0	35	1.53

Tables:   1

The End!