genome.fa.s5140.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005140.1 Hibiscus syriacus cultivar Beakdansim tig00011576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75446

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774--979	60	3.5	60	89	1	306	38	10	20	30	1.86
5352--5506	81	1.9	81	88	4	231	25	25	10	38	1.87
5857--6003	20	6.7	20	72	18	123	19	25	12	42	1.86
5877--6029	46	3.3	46	88	3	236	19	24	12	43	1.85
5990--6053	26	2.5	26	92	0	101	18	21	12	46	1.82
6026--6217	45	4.4	45	83	7	234	27	19	10	41	1.85
6645--6821	95	1.9	94	83	8	234	25	23	13	36	1.92
9248--9619	137	2.7	135	82	6	439	29	12	13	45	1.79
12028--12058	16	1.9	16	100	0	62	29	6	19	45	1.75
12881--13634	377	2.0	377	96	0	1391	33	15	19	31	1.93
15484--15541	27	2.2	26	81	12	64	29	15	8	46	1.75
19281--19326	22	2.1	22	84	8	58	50	0	4	45	1.21
20077--20113	14	2.6	14	91	4	56	29	5	2	62	1.31
22263--22298	14	2.5	14	95	4	63	30	5	2	61	1.33
23833--23866	5	6.6	5	89	3	50	79	0	0	20	0.73
26153--26525	130	2.9	131	81	5	436	31	16	20	30	1.95
27834--27890	23	2.3	25	82	11	73	12	10	0	77	1.00
27849--27906	24	2.5	23	78	13	64	13	6	0	79	0.93
33681--33825	61	2.3	64	84	5	188	26	15	28	28	1.96
37638--37823	102	1.8	102	91	0	309	30	26	18	24	1.98
45004--45048	19	2.3	20	88	11	67	26	8	48	15	1.74
47212--47254	20	2.2	20	87	4	61	34	9	6	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53639--53746	45	2.3	46	82	6	121	31	9	18	40	1.82
53944--54045	23	4.4	23	76	2	89	18	22	26	32	1.97
53936--54032	46	2.1	46	88	0	140	20	23	22	32	1.98
54026--54083	25	2.4	24	88	2	80	22	15	20	41	1.90
54179--54242	6	10.8	6	86	1	76	42	0	25	32	1.55
73395--73434	20	2.0	20	85	9	55	57	7	5	30	1.48

Tables:   1

The End!