genome.fa.s5141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005141.1 Hibiscus syriacus cultivar Beakdansim tig00011579_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117499

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3203--3266	5	13.2	5	86	6	96	39	0	20	40	1.52
3201--3254	19	2.8	19	91	2	81	38	0	22	38	1.54
3195--3266	29	2.4	29	86	8	101	40	0	18	41	1.50
4947--4976	2	15.0	2	100	0	60	50	0	0	50	1.00
18618--18656	12	2.9	14	81	14	55	38	5	0	56	1.22
18615--18658	14	3.3	14	81	12	65	34	4	0	61	1.16
18773--18856	42	2.0	42	100	0	168	50	4	14	30	1.63
19437--19481	16	2.8	16	100	0	90	28	37	13	20	1.90
31981--32173	20	9.6	20	84	5	246	34	27	19	18	1.95
32553--32623	33	2.2	33	94	0	124	11	23	16	47	1.79
32703--32795	21	4.6	20	80	9	116	47	18	20	13	1.82
32703--32795	42	2.3	41	87	5	134	47	18	20	13	1.82
32817--32930	19	6.1	19	78	13	103	11	24	18	45	1.82
32866--32930	21	3.1	21	82	4	96	10	26	15	47	1.78
34615--34837	93	2.4	93	98	0	428	22	13	18	44	1.85
34953--35009	14	3.7	14	72	20	51	43	24	22	8	1.81
34967--35058	19	5.4	18	72	24	65	46	28	17	7	1.75
34935--35058	33	3.7	33	91	1	185	45	27	17	8	1.78
34984--35042	14	3.9	14	76	20	64	47	28	16	6	1.72
35054--35212	19	8.6	19	82	7	157	10	18	25	45	1.82
37137--37172	14	2.6	14	95	0	63	33	0	22	44	1.53
37263--37350	19	4.8	19	82	14	123	47	15	22	13	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37263--37369	53	2.0	53	98	1	207	45	16	24	13	1.83
37359--37672	19	17.7	19	76	17	336	14	22	16	46	1.84
37365--37686	52	6.1	52	89	7	474	14	22	16	46	1.83
37439--37686	33	7.2	33	74	15	223	14	22	17	46	1.83
37365--37686	105	3.1	104	89	6	474	14	22	16	46	1.83
37365--37672	72	4.4	71	78	12	305	14	22	16	46	1.83
39971--39995	12	2.1	12	100	0	50	0	28	0	72	0.86
40170--40216	24	2.0	24	87	8	69	38	21	14	25	1.92
40923--41137	20	10.8	20	84	2	216	19	18	25	36	1.95
41105--41202	21	4.8	20	75	10	81	21	19	21	37	1.94
41105--41203	42	2.4	43	77	11	100	21	19	22	37	1.94
48423--48705	140	2.0	140	98	0	548	42	16	13	26	1.86
50754--50804	21	2.4	21	93	6	86	9	33	35	21	1.86
53001--53041	19	2.1	20	86	4	57	31	2	4	60	1.30
62477--62528	20	2.6	20	96	0	95	38	26	13	21	1.90
62518--62616	21	4.8	20	72	6	72	36	23	19	21	1.95
62583--62776	20	9.6	20	81	5	221	35	25	19	19	1.95
62583--62776	60	3.2	60	83	0	253	35	25	19	19	1.95
63158--63228	33	2.2	33	92	0	115	11	22	18	47	1.80
63349--63403	14	3.6	14	73	21	56	40	23	27	9	1.85
63349--63419	33	2.2	33	92	0	115	42	25	23	8	1.82
63415--63512	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63437--63526	14	5.7	14	74	23	81	8	25	23	42	1.83
63420--63534	33	3.5	33	95	0	212	9	24	20	45	1.81
64538--65009	93	5.1	93	99	0	930	22	12	19	46	1.83
65053--65181	19	7.3	19	73	17	98	45	26	17	10	1.80
65089--65181	33	2.8	32	88	4	141	46	24	19	9	1.80
65177--65311	19	7.6	19	75	16	128	11	19	23	45	1.82
65199--65255	14	3.7	14	77	20	60	10	21	22	45	1.82
65182--65274	33	2.8	33	95	0	168	10	20	21	47	1.80
67127--67199	38	1.9	38	97	0	137	28	1	16	53	1.51
67123--67186	19	3.4	19	64	10	51	25	1	15	57	1.47
67181--67216	14	2.6	14	95	0	63	33	0	22	44	1.53
67329--67430	19	5.6	19	80	12	133	43	17	24	14	1.87
67459--67746	19	16.4	19	78	18	331	14	20	18	46	1.83
67437--67746	52	5.9	49	86	9	291	14	20	18	46	1.84
67459--67746	71	4.1	72	81	14	354	14	20	18	46	1.83
67437--67679	123	2.0	123	96	1	452	14	20	17	46	1.83
67478--67746	33	7.8	33	77	17	253	14	20	18	46	1.83
70247--70293	24	2.0	24	87	8	69	38	21	14	25	1.92
70966--71334	20	18.5	20	86	4	458	20	18	26	34	1.96
77995--78038	22	2.0	22	81	0	52	52	15	4	27	1.63
79973--80015	17	2.5	17	84	0	50	2	20	2	74	1.04
80656--80688	16	2.1	16	100	0	66	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80656--80681	13	2.0	13	100	0	52	69	0	0	30	0.89
80973--81213	40	5.8	40	79	9	234	23	19	33	24	1.97
80834--81213	169	2.2	171	92	2	622	23	18	32	25	1.97
81013--81265	129	2.0	129	96	1	463	24	18	31	25	1.98
81614--81696	35	2.3	36	82	10	100	36	12	19	32	1.88
81991--82065	31	2.4	30	82	8	80	40	13	14	32	1.85
82098--82177	40	2.0	40	85	4	108	40	11	17	31	1.85
82159--82283	64	2.0	63	87	3	180	43	12	14	30	1.82
82482--82673	70	2.8	68	83	6	203	45	11	12	30	1.77
82524--82648	37	3.5	36	72	8	121	43	11	12	32	1.78
82523--82666	70	2.1	70	93	2	245	42	11	11	34	1.77
82651--82755	52	2.0	53	90	3	167	36	17	13	33	1.88
82751--82872	29	4.4	27	80	10	92	46	14	10	27	1.78
82766--82866	29	3.7	28	83	10	120	44	16	9	28	1.80
83110--83212	36	3.0	35	80	7	113	33	11	21	33	1.89
83111--83229	36	3.4	36	78	6	102	35	12	21	30	1.91
83181--83413	105	2.3	101	82	8	265	38	12	18	30	1.88
83878--83921	4	11.5	4	90	9	74	25	0	25	50	1.50
85085--85122	11	3.4	11	89	7	58	5	13	10	71	1.30
85080--85126	12	3.8	12	80	8	51	4	12	10	72	1.25
85789--85830	20	2.1	20	90	0	66	40	11	19	28	1.87
85761--85840	26	3.3	25	72	21	89	40	10	23	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85747--85840	46	2.1	45	87	2	134	37	9	25	27	1.87
88269--88330	32	2.0	32	96	3	117	61	9	14	14	1.57
89826--89869	22	2.0	22	81	0	52	52	15	4	27	1.63
90194--90253	30	2.1	28	84	6	75	56	8	13	21	1.63
91798--91840	17	2.5	17	84	0	50	2	20	2	74	1.04
92482--92518	3	12.3	3	88	11	58	70	0	0	29	0.88
100232--100270	15	2.6	15	79	0	51	23	2	0	74	0.94
100699--100775	37	2.1	37	85	4	102	48	1	3	46	1.28
113104--113216	58	1.9	60	89	10	180	47	17	10	23	1.79

Tables:   1

The End!