genome.fa.s5142.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005142.1 Hibiscus syriacus cultivar Beakdansim tig00011581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103565

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13159--13202	22	2.0	22	100	0	88	45	4	13	36	1.64
13161--13210	22	2.3	22	92	0	82	48	6	12	34	1.65
14585--14626	18	2.3	19	84	12	61	61	4	9	23	1.45
16000--16163	82	2.0	82	100	0	328	40	21	17	20	1.91
18078--18117	13	3.0	13	85	14	55	77	0	2	20	0.88
18078--18111	6	5.3	6	89	10	50	79	0	2	17	0.86
19583--19624	21	2.0	21	95	0	75	28	30	16	23	1.96
20995--21036	17	2.5	17	85	14	52	66	0	4	28	1.12
24502--24567	19	3.5	19	89	0	105	37	36	0	25	1.57
24502--24582	38	2.1	38	93	0	135	37	33	0	29	1.58
24496--24556	6	9.8	6	77	7	59	36	39	1	22	1.64
24502--24582	19	4.3	19	83	0	99	37	33	0	29	1.58
26061--26149	39	2.2	39	82	6	97	25	16	20	37	1.93
30379--30433	20	2.7	20	94	2	92	40	23	0	36	1.55
34977--35096	42	2.9	42	94	0	204	15	19	20	44	1.87
35267--35322	22	2.5	23	77	19	64	50	0	0	50	1.00
35279--35322	20	2.0	22	87	12	65	47	0	0	52	1.00
35271--35367	31	3.1	32	74	16	94	47	1	0	51	1.07
35336--35403	28	2.4	28	77	0	73	50	1	1	47	1.19
35352--35454	28	3.5	29	80	18	108	43	0	1	53	1.18
35652--35701	20	2.5	20	100	0	100	34	16	10	40	1.81
35684--35780	15	6.5	15	87	2	124	36	20	7	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35684--35784	30	3.4	30	87	1	150	34	19	6	38	1.79
46497--46572	31	2.4	31	80	2	89	27	31	26	14	1.95
46449--46572	63	2.0	63	82	9	155	26	29	27	16	1.97
47462--47521	5	11.2	5	77	13	57	8	21	51	18	1.72
47455--47521	22	3.0	22	95	0	125	10	22	49	17	1.77
47448--47502	27	2.0	29	92	7	96	12	23	45	18	1.83
47522--47593	9	7.7	9	81	9	90	26	33	26	13	1.94
47521--47594	19	3.9	19	94	3	123	25	32	27	14	1.95
53847--53922	31	2.4	31	80	2	89	27	31	26	14	1.95
53799--53922	63	2.0	63	82	9	155	26	29	27	16	1.97
54792--54816	7	3.6	7	100	0	50	28	28	28	16	1.97
54805--54849	22	2.0	22	95	0	81	11	22	48	17	1.78
54850--54922	9	7.7	9	79	11	83	28	31	24	15	1.95
54849--54923	19	3.9	19	86	8	98	28	30	25	16	1.96
56722--56755	13	2.6	13	90	0	50	73	14	0	11	1.10
58594--58661	35	1.9	35	85	5	93	17	17	17	47	1.84
58610--58676	35	1.9	35	81	6	82	16	19	17	46	1.85
61206--61265	18	3.3	18	74	9	50	41	0	5	53	1.23
71447--71496	2	25.0	2	100	0	100	50	0	0	50	1.00
74701--74730	16	1.9	16	93	6	53	83	10	0	6	0.81
76574--76624	18	2.9	17	77	11	50	68	0	1	29	1.00
84871--84911	22	1.9	22	85	5	57	53	7	17	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85877--85954	31	2.5	31	91	0	120	24	26	14	34	1.93
87375--87479	39	2.7	39	100	0	210	41	11	20	26	1.86
87448--87505	26	2.2	26	96	3	107	43	13	17	25	1.86
91933--91969	19	2.1	17	90	10	56	56	21	13	8	1.63
93022--93076	15	3.7	15	71	22	53	49	0	3	47	1.19
93399--93531	60	2.2	60	86	4	189	32	17	18	31	1.94
94205--94264	30	2.0	31	96	3	113	6	50	10	33	1.62
94305--94342	20	1.9	20	84	10	51	34	2	23	39	1.69
95512--95597	23	3.7	23	80	6	102	27	19	19	32	1.97
96400--96436	16	2.2	17	86	13	51	67	5	2	24	1.25
102674--102703	14	2.1	14	93	0	51	43	0	6	50	1.28

Tables:   1

The End!