Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005146.1 Hibiscus syriacus cultivar Beakdansim tig00011592_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 148056
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Found at i:1463 original size:2 final size:2
Alignment explanation
Indices: 1456--1495 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1446 AGAGTTAATG
1456 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1496 ATTTGTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4504 original size:20 final size:20
Alignment explanation
Indices: 4457--4509 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
4447 TGAGGGATGT
*
4457 AGTATCGATACCATATGCTC
1 AGTATCGATACCAGATGCTC
* *
4477 GGTATCGATACCGGATGCTC
1 AGTATCGATACCAGATGCTC
* *
4497 AGTCTCGAAACCA
1 AGTATCGATACCA
4510 CTGGGTCTTC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (20 bp):
AGTATCGATACCAGATGCTC
Found at i:4557 original size:20 final size:20
Alignment explanation
Indices: 4534--4575 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
4524 TGGAAAAATA
* *
4534 GTCTCCATACTAGAGAACTG
1 GTCTCCATACTAAAAAACTG
*
4554 GTCTCTATACTAAAAAACTG
1 GTCTCCATACTAAAAAACTG
4574 GT
1 GT
4576 ATCAATACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (20 bp):
GTCTCCATACTAAAAAACTG
Found at i:4583 original size:20 final size:19
Alignment explanation
Indices: 4549--4587 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
4539 CATACTAGAG
* *
4549 AACTGGTCTCTATACTAAAA
1 AACTGGTATCAATAC-AAAA
4569 AACTGGTATCAATACAAAA
1 AACTGGTATCAATACAAAA
4588 GATTGATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.46, C:0.18, G:0.10, T:0.26
Consensus pattern (19 bp):
AACTGGTATCAATACAAAA
Found at i:4624 original size:20 final size:21
Alignment explanation
Indices: 4575--4629 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
4565 AAAAAACTGG
*
4575 TATCAATA-CAAAAGATTGAT
1 TATCAATACCAAAGGATTGAT
* *
4595 TATCCATACCAAAGGCTTGA-
1 TATCAATACCAAAGGATTGAT
4615 TATCAATACCTAAAG
1 TATCAATACC-AAAG
4630 TGGTTGAGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.27
Consensus pattern (21 bp):
TATCAATACCAAAGGATTGAT
Found at i:5349 original size:18 final size:19
Alignment explanation
Indices: 5326--5370 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
5316 ATTTTTGGTG
5326 TCGATACTCAAAG-GAGTA
1 TCGATACTCAAAGAGAGTA
*
5344 TCGATAC-CAAGGTAGAGTA
1 TCGATACTCAAAG-AGAGTA
5363 TCGATACT
1 TCGATACT
5371 TCCTATGGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 4 0.17
18 7 0.30
19 12 0.52
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (19 bp):
TCGATACTCAAAGAGAGTA
Found at i:6427 original size:29 final size:29
Alignment explanation
Indices: 6384--6457 Score: 121
Period size: 29 Copynumber: 2.5 Consensus size: 29
6374 GTCTAAAATG
*
6384 AAGGTCCAAGGTCCAGTCAGAACTCAAGCA
1 AAGGT-CAAGGTCCAATCAGAACTCAAGCA
*
6414 AAGGTCAAGGTCCAATCAGAACTCAAGCC
1 AAGGTCAAGGTCCAATCAGAACTCAAGCA
6443 AAGGTCAAGGTCCAA
1 AAGGTCAAGGTCCAA
6458 CAAACGGAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
29 37 0.88
30 5 0.12
ACGTcount: A:0.38, C:0.26, G:0.23, T:0.14
Consensus pattern (29 bp):
AAGGTCAAGGTCCAATCAGAACTCAAGCA
Found at i:6879 original size:50 final size:50
Alignment explanation
Indices: 6822--6926 Score: 210
Period size: 50 Copynumber: 2.1 Consensus size: 50
6812 CAAAGATCAA
6822 CACAAACAAAATTGGAAATGAAATAAAAAAAAATCAAACGAACATCAAAT
1 CACAAACAAAATTGGAAATGAAATAAAAAAAAATCAAACGAACATCAAAT
6872 CACAAACAAAATTGGAAATGAAATAAAAAAAAATCAAACGAACATCAAAT
1 CACAAACAAAATTGGAAATGAAATAAAAAAAAATCAAACGAACATCAAAT
6922 CACAA
1 CACAA
6927 CGGGTAAGAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.64, C:0.15, G:0.08, T:0.13
Consensus pattern (50 bp):
CACAAACAAAATTGGAAATGAAATAAAAAAAAATCAAACGAACATCAAAT
Found at i:10694 original size:13 final size:13
Alignment explanation
Indices: 10652--10694 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
10642 GTCATAACCC
10652 GACCCGACCCGTT
1 GACCCGACCCGTT
* * * *
10665 AACCTGACTCATT
1 GACCCGACCCGTT
10678 GACCCGACCCGTT
1 GACCCGACCCGTT
10691 GACC
1 GACC
10695 GACATTGACC
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.21, C:0.42, G:0.19, T:0.19
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:13694 original size:44 final size:43
Alignment explanation
Indices: 13450--13798 Score: 515
Period size: 43 Copynumber: 8.1 Consensus size: 43
13440 TTAATTACCG
*
13450 TTACTGTT-CCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
* * *
13492 TTACAATTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAACCC
1 TTACAGTTCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
13535 TTACAGTTCCCCCAGGTCCCTTT-ACTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGA-TGTGTGCAAGGGTAAGCC
13578 TTACAGTTCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
*
13621 TTACAGTTCCCCCGGGTCCCTTTGATGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
*
13664 TTACAGTTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAG-TTCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
* *
13708 TTACAGTTTCCCCCAGGTCCATTTGTTGTGTGCAAGGGTAAGCC
1 TTACAG-TTCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
* * * * *
13752 TTACAGTTTCCCCAGG-CTCTTTTACTATGTGCAAGGATAAGACC
1 TTACAGTTCCCCCAGGTCCCTTTGA-TGTGTGCAAGGGTAAG-CC
13796 TTA
1 TTA
13799 TCGTTTTTGT
Statistics
Matches: 283, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
42 10 0.04
43 183 0.65
44 90 0.32
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.30
Consensus pattern (43 bp):
TTACAGTTCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAAGCC
Found at i:15739 original size:18 final size:18
Alignment explanation
Indices: 15716--15758 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
15706 ACCGGTCATA
*
15716 ACCCGACCCGACCCGTTG
1 ACCCGACCCAACCCGTTG
15734 ACCCGACCCAACCCGTTG
1 ACCCGACCCAACCCGTTG
15752 ACCCGAC
1 ACCCGAC
15759 TCGTACACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.21, C:0.51, G:0.19, T:0.09
Consensus pattern (18 bp):
ACCCGACCCAACCCGTTG
Found at i:18955 original size:44 final size:43
Alignment explanation
Indices: 18520--18924 Score: 686
Period size: 43 Copynumber: 9.4 Consensus size: 43
18510 TTAATTACCG
18520 TTACAGTT-CCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
* *
18562 TTACAGTTCCCCCAGGTCCTTTTGCTGTGTGCAAAGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
18605 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
18648 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
18691 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
* *
18734 TTACAGTTCCCCCAAGTCCCTTTACTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
* *
18777 TTACAGTTTCTCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAG-TTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
* *
18821 TTACAGTTTCTCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAG-TTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
*
18865 TTACAGTTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAG-TTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
*
18909 TTACAGTTTCCCCAGG
1 TTACAGTTCCCCCAGG
18925 CTCTTTTTCT
Statistics
Matches: 349, Mismatches: 12, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
42 8 0.02
43 215 0.62
44 126 0.36
ACGTcount: A:0.17, C:0.28, G:0.24, T:0.30
Consensus pattern (43 bp):
TTACAGTTCCCCCAGGTCCCTTTGCTGTGTGCAAGGGTAAGCC
Found at i:21581 original size:86 final size:80
Alignment explanation
Indices: 21451--21619 Score: 214
Period size: 86 Copynumber: 2.0 Consensus size: 80
21441 TATTGTTTGT
*
21451 GTTTGGGGTGAAAACAGGATTTTCTTGGGCTTCGATATCAATACTGGATTAGTATTAATATCGGC
1 GTTTGGGGTGAAAACAGGATTTTCTTGAGCTTCGATATCAATACTGGA-T--TA-T--TATCGGC
21516 CCCATGGTATCGATACTGTGG
60 CCCATGGTATCGATACTGTGG
* * * *
21537 GTTTTGGGTGAAAACATGG-TTTTCTTTAGCTTTGGTATCAATACTGGATTATTATCGGCCCCAT
1 GTTTGGGGTGAAAACA-GGATTTTCTTGAGCTTCGATATCAATACTGGATTATTATCGGCCCCAT
*
21601 GGTATCGATATTGTGG
65 GGTATCGATACTGTGG
21617 GTT
1 GTT
21620 GTAGTACCGA
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
80 30 0.39
82 1 0.01
83 2 0.03
85 1 0.01
86 40 0.53
87 2 0.03
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.37
Consensus pattern (80 bp):
GTTTGGGGTGAAAACAGGATTTTCTTGAGCTTCGATATCAATACTGGATTATTATCGGCCCCATG
GTATCGATACTGTGG
Found at i:21751 original size:20 final size:20
Alignment explanation
Indices: 21716--21780 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 20
21706 ACCGAAAGAA
*
21716 TGATATCAATATC-AAAGGT
1 TGATATCAATACCAAAAGGT
*
21735 TGAGTATCCATACC-AAAGGCT
1 TGA-TATCAATACCAAAAGG-T
21756 TGATATCAATACCTAAAATGGT
1 TGATATCAATACC-AAAA-GGT
21778 TGA
1 TGA
21781 GTAACTTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 3 0.08
20 22 0.58
21 4 0.11
22 7 0.18
23 2 0.05
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (20 bp):
TGATATCAATACCAAAAGGT
Found at i:27087 original size:20 final size:20
Alignment explanation
Indices: 27058--27109 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
27048 CTGGGGATTC
*
27058 GGTATCGATATTAGAGTATT
1 GGTATCGATATTAGACTATT
* * *
27078 GGTATTGATACTAGCCTATT
1 GGTATCGATATTAGACTATT
27098 GGTATCGATATT
1 GGTATCGATATT
27110 GAGGTTGTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (20 bp):
GGTATCGATATTAGACTATT
Found at i:28408 original size:20 final size:19
Alignment explanation
Indices: 28359--28408 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
28349 CATTGTGTGA
*
28359 AGTATCAATACCCAATGTG
1 AGTATCAATACCCAAGGTG
** *
28378 AGTATTGATACCCAAGGGTT
1 AGTATCAATACCCAA-GGTG
28398 AGTATCAATAC
1 AGTATCAATAC
28409 ATCTGGCATA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (19 bp):
AGTATCAATACCCAAGGTG
Found at i:46368 original size:17 final size:17
Alignment explanation
Indices: 46346--46385 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
46336 AAACACGAGC
*
46346 ATTTTTT-TATAATGGTA
1 ATTTTTTATATAAT-ATA
46363 ATTTTTTATATAATATA
1 ATTTTTTATATAATATA
46380 ATTTTT
1 ATTTTT
46386 CATTTTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
ATTTTTTATATAATATA
Found at i:52528 original size:139 final size:139
Alignment explanation
Indices: 52272--52558 Score: 349
Period size: 139 Copynumber: 2.1 Consensus size: 139
52262 CCTTGAGATA
*
52272 CAAATTATCCCTAAAGACAACTAGACATCCTCATCACATAGGAACAATGTCGTCCACCAACCAGA
1 CAAATTATCCCTAAAGACAACCAGACATCCTCATCACATAGGAACAATGTCGTCCACCAACCAGA
* * *** * * *
52337 TTTCCTTAACGTGAAGGAGCAGTGTCACCCTCAGACAACCAGACTTCCTCATCACGTAGGAACCC
66 TCTCCTCAACACAAAGGACCAGTGTCACCCTCAGACAACCAGACTTCCTCATCACATAGGAACCA
*
52402 TGTTGTCTC
131 TGTTGTCAC
* ** * * * **
52411 CAAAGTATCCCTAAAGACGGCCATACATCCTCATTACGTAGGAACAATGTCGTCCACTGACCAGA
1 CAAATTATCCCTAAAGACAACCAGACATCCTCATCACATAGGAACAATGTCGTCCACCAACCAGA
** * * ** *
52476 TCTCCTCAACACAAATTACCAGTGTCATCCTTAGACAATTAGACTTCTTCATCACATAGGAACCA
66 TCTCCTCAACACAAAGGACCAGTGTCACCCTCAGACAACCAGACTTCCTCATCACATAGGAACCA
52541 TGTTGTCAC
131 TGTTGTCAC
52550 CAAATTATC
1 CAAATTATC
52559 TCCATATTAA
Statistics
Matches: 122, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
139 122 1.00
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (139 bp):
CAAATTATCCCTAAAGACAACCAGACATCCTCATCACATAGGAACAATGTCGTCCACCAACCAGA
TCTCCTCAACACAAAGGACCAGTGTCACCCTCAGACAACCAGACTTCCTCATCACATAGGAACCA
TGTTGTCAC
Found at i:52812 original size:3 final size:3
Alignment explanation
Indices: 52804--52850 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
52794 TAATTAATTA
* *
52804 ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT -TT ATT AAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
52851 TATTTACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:55131 original size:54 final size:54
Alignment explanation
Indices: 55061--55286 Score: 292
Period size: 54 Copynumber: 4.2 Consensus size: 54
55051 CTCTATGTAC
* * * *
55061 TATCGACACTAAGTGTGCAACCCATGGAATTCATCATATGTTGATGAACAACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACGACCG
* * * ** * *
55115 CATCGGCACTAAGTGTGAAACCCATAAAATTTATCATATGTTGATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACGACCG
*
55169 TACCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACGACCG
* * * * *
55223 TAT-AACACTAAGTGTGCAACCCACGTAATTTATAATATATTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACGACCG
55276 TATCGACACTA
1 TATCGACACTA
55287 CGTATTCATC
Statistics
Matches: 149, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 48 0.32
54 101 0.68
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (54 bp):
TATCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACGACCG
Found at i:55283 original size:107 final size:108
Alignment explanation
Indices: 55061--55286 Score: 310
Period size: 107 Copynumber: 2.1 Consensus size: 108
55051 CTCTATGTAC
* * * **
55061 TATCGACACTAAGTGTGCAACCCATGGAATTCATCATATGTTGATGAACAACCGCATCGGCACTA
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACAACCGCATCAACACTA
* * *
55126 AGTGTGAAACCCATAAAATTTATCATATGTTGATGAACGACCG
66 AGTGTGAAACCCACAAAATTTATAATATATTGATGAACGACCG
* * *
55169 TACCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACGACCGTAT-AACACTA
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACAACCGCATCAACACTA
* ** *
55233 AGTGTGCAACCCACGTAATTTATAATATATTTATGAACGACCG
66 AGTGTGAAACCCACAAAATTTATAATATATTGATGAACGACCG
55276 TATCGACACTA
1 TATCGACACTA
55287 CGTATTCATC
Statistics
Matches: 102, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
107 51 0.50
108 51 0.50
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (108 bp):
TATCGACACTAAGTGTGCAACCCACGAAATTCATAATATGTTGATGAACAACCGCATCAACACTA
AGTGTGAAACCCACAAAATTTATAATATATTGATGAACGACCG
Found at i:58033 original size:30 final size:30
Alignment explanation
Indices: 57972--58079 Score: 92
Period size: 30 Copynumber: 3.6 Consensus size: 30
57962 TTCTATGTTT
* * * *
57972 TTCGAGACATATGGATAGTTTACCTAGGTTC
1 TTCGTGACCTATGGATAG-TTGCCGAGGTTC
*
58003 TTCGGGACCTATGGATAGTTGCCGAGGTTC
1 TTCGTGACCTATGGATAGTTGCCGAGGTTC
** * * *
58033 TTTATGACCTCTGGATAGTTGTCG-GGGTC
1 TTCGTGACCTATGGATAGTTGCCGAGGTTC
* *
58062 TTTGTGACCTCTGGATAG
1 TTCGTGACCTATGGATAG
58080 GTTCTTCGGG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 21 0.32
30 29 0.44
31 16 0.24
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.35
Consensus pattern (30 bp):
TTCGTGACCTATGGATAGTTGCCGAGGTTC
Found at i:58072 original size:29 final size:30
Alignment explanation
Indices: 58008--58079 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
57998 GGTTCTTCGG
* *
58008 GACCTATGGATAGTTGCCGAGGTTCTTTAT
1 GACCTCTGGATAGTTGCCGAGGGTCTTTAT
* *
58038 GACCTCTGGATAGTTGTCG-GGGTCTTTGT
1 GACCTCTGGATAGTTGCCGAGGGTCTTTAT
58067 GACCTCTGGATAG
1 GACCTCTGGATAG
58080 GTTCTTCGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
29 21 0.55
30 17 0.45
ACGTcount: A:0.17, C:0.18, G:0.31, T:0.35
Consensus pattern (30 bp):
GACCTCTGGATAGTTGCCGAGGGTCTTTAT
Found at i:60547 original size:21 final size:23
Alignment explanation
Indices: 60523--60565 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
60513 AAATTTTGAA
60523 ATTTTGAAAT-TTT-AAAGTCTG
1 ATTTTGAAATATTTAAAAGTCTG
60544 ATTTTGAAATATTTAAAAGTCT
1 ATTTTGAAATATTTAAAAGTCT
60566 AGTGATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.50
22 3 0.15
23 7 0.35
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.47
Consensus pattern (23 bp):
ATTTTGAAATATTTAAAAGTCTG
Found at i:62213 original size:31 final size:31
Alignment explanation
Indices: 62178--62249 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 31
62168 TTTCGAAACA
* *
62178 TATGGATAGTTTACCTAGGTTCTTTGGGACC
1 TATGGATAGTTTACCAAGGTTCTTTAGGACC
* * *
62209 TATGGACAG-TTGCCAAGGTTCTTTATGACC
1 TATGGATAGTTTACCAAGGTTCTTTAGGACC
*
62239 TCTGGATAGTT
1 TATGGATAGTT
62250 GCTGGGGTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
30 24 0.73
31 9 0.27
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.38
Consensus pattern (31 bp):
TATGGATAGTTTACCAAGGTTCTTTAGGACC
Found at i:68179 original size:20 final size:20
Alignment explanation
Indices: 68156--68210 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
68146 CTGAGATGTG
*
68156 GGTATTGATACTATGAGGAA
1 GGTATCGATACTATGAGGAA
*
68176 GGTATCAATACTATGAGGAA
1 GGTATCGATACTATGAGGAA
68196 GGTATCGATACTATG
1 GGTATCGATACTATG
68211 GATTCCAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (20 bp):
GGTATCGATACTATGAGGAA
Found at i:68713 original size:54 final size:54
Alignment explanation
Indices: 68623--68903 Score: 384
Period size: 54 Copynumber: 5.2 Consensus size: 54
68613 CTTTGTGTAC
* * *
68623 TATCGGCACTAAGTGTGCAACCCACGGAATTTATCATATGTTGATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACGACCG
* *
68677 TATCGACACTAAGTGTGCAACCCACAAAATTCATCATATGTTGATGAACGACCA
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACGACCG
* * * *
68731 TATCGACACTAAGTGTGTAACCCATGGAATTCATCATATGTTGATGAACAACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACGACCG
* * *
68785 TATCGGCACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAAAGGCCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACGACCG
* * * * * *
68839 TATAGGCATTAAGTGTGCAACCCATGAAATTCATAATATGAAT-ATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATCATATG-TTGATGAACGACCG
68893 TATCGACACTA
1 TATCGACACTA
68904 CGTATGCATC
Statistics
Matches: 198, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
54 197 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (54 bp):
TATCGACACTAAGTGTGCAACCCACGAAATTCATCATATGTTGATGAACGACCG
Found at i:70466 original size:19 final size:19
Alignment explanation
Indices: 70425--70466 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
70415 AAACACGAAC
*
70425 ATTTTTTTATAATGGTAAT
1 ATTTTTTTATAATGATAAT
70444 -TTTTTTATATAAT-ATAAT
1 ATTTTTT-TATAATGATAAT
70462 ATTTT
1 ATTTT
70467 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
ATTTTTTTATAATGATAAT
Found at i:74846 original size:11 final size:10
Alignment explanation
Indices: 74832--74907 Score: 62
Period size: 10 Copynumber: 7.2 Consensus size: 10
74822 TAAATGACTT
*
74832 AAAAAAAGTA
1 AAAAAAAATA
*
74842 AAAAAAGATA
1 AAAAAAAATA
74852 AAACAAACAATA
1 AAA-AAA-AATA
74864 AAAATAAAATA
1 AAAA-AAAATA
* *
74875 AAATAAGATA
1 AAAAAAAATA
*
74885 ATAAACAAATA
1 A-AAAAAAATA
*
74896 AAATAAAATA
1 AAAAAAAATA
74906 AA
1 AA
74908 CAAATAAACA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
10 26 0.50
11 18 0.35
12 8 0.15
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:74874 original size:5 final size:5
Alignment explanation
Indices: 74864--74907 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
74854 ACAAACAATA
*
74864 AAAAT AAAAT AAAAT AAGAT AATAA- ACAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AA-AAT A-AAAT AAAAT AAAAT AAA
74908 CAAATAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 31 0.91
6 3 0.09
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:74885 original size:21 final size:20
Alignment explanation
Indices: 74831--74907 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
74821 ATAAATGACT
* *
74831 TAAAA-AAAGTAAAAAAAGA
1 TAAAATAAAATAAAAAAAAA
*
74850 TAAAACAAACAATAAAAATAAAA
1 TAAAA-TAA-AATAAAAA-AAAA
* *
74873 TAAAATAAGATAATAAACAAA
1 TAAAATAAAATAA-AAAAAAA
74894 TAAAATAAAATAAA
1 TAAAATAAAATAAA
74908 CAAATAAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
19 5 0.11
20 1 0.02
21 21 0.45
22 12 0.26
23 8 0.17
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.16
Consensus pattern (20 bp):
TAAAATAAAATAAAAAAAAA
Found at i:74894 original size:26 final size:26
Alignment explanation
Indices: 74849--74920 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
74839 GTAAAAAAAG
*
74849 ATAAAACAAAC-AAT-AA-AAATAAA
1 ATAAAATAAACAAATAAACAAATAAA
*
74872 ATAAAATAAGA-TAATAAACAAATAAA
1 ATAAAATAA-ACAAATAAACAAATAAA
74898 ATAAAATAAACAAATAAACAAAT
1 ATAAAATAAACAAATAAACAAAT
74921 TAGAAAAACC
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 8 0.19
24 4 0.10
25 3 0.07
26 27 0.64
ACGTcount: A:0.75, C:0.07, G:0.01, T:0.17
Consensus pattern (26 bp):
ATAAAATAAACAAATAAACAAATAAA
Found at i:75220 original size:2 final size:2
Alignment explanation
Indices: 75213--75257 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
75203 AAACACGCAA
75213 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75255 AT A
1 AT A
75258 CTATTAGTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:75535 original size:12 final size:12
Alignment explanation
Indices: 75480--75535 Score: 60
Period size: 12 Copynumber: 4.4 Consensus size: 12
75470 TATAAAAAGA
75480 AATAAGTATATAT
1 AATAA-TATATAT
*
75493 ATATATATACATAT
1 A-ATA-ATATATAT
75507 AATAATA-ATAAT
1 AATAATATAT-AT
75519 AATAATATATAT
1 AATAATATATAT
75531 AATAA
1 AATAA
75536 AACGTAATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
11 2 0.05
12 19 0.50
13 6 0.16
14 10 0.26
15 1 0.03
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (12 bp):
AATAATATATAT
Found at i:77267 original size:105 final size:105
Alignment explanation
Indices: 76971--77852 Score: 1539
Period size: 105 Copynumber: 8.4 Consensus size: 105
76961 GTATTGTCCT
* *** * * * *
76971 GAGTCCAATATCCTCCACCGTGAAGTTGAAACTAGATCTGAAATTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
*
77036 CAGCGGTCCCTTCGTCGTGAGGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
77076 GAGTCCAATATCCTTCGTTGTGAAGTTGAAAACTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTG-AAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAA
77141 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
77182 GAGTCTAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
*
77247 CAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
77287 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
77352 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
77392 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
77457 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
77497 GAGTCCAATATCATTCGTTGTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
*
77562 CAGCGGTCCCTTCGTAGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
77602 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGAAGTTATTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAA-ATGTTTGTTGACAA
77667 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
77708 GAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
* *
77773 CAGCGGTCCCTTCGTCGCGAAGTTGAACTTGCGTTGTCTA
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
77813 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
77853 GGTAAAACCT
Statistics
Matches: 744, Mismatches: 31, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
105 544 0.73
106 200 0.27
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:77755 original size:421 final size:421
Alignment explanation
Indices: 76971--77852 Score: 1543
Period size: 421 Copynumber: 2.1 Consensus size: 421
76961 GTATTGTCCT
* *** * * *
76971 GAGTCCAATATCCTCCACCGTGAAGTTGAAACTAGATCTGAAATTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
* *
77036 CAGCGGTCCCTTCGTCGTGAGGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTCGTTGTGAAG
*
77101 TTGAAAACTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
131 TTGAAAACTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTAGTGAAGTT
* * *
77166 GAACTTGCGTTGTCTGGAGTCTAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGA
196 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGA
* *
77231 AATGTTTGTTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
261 AATATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
*
77296 ATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGTCC
326 ATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGTCC
* *
77361 CTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
391 CTTCGTCGCGAAGTTGAACTTGCGTTGTCTA
*
77392 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
77457 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTCGTTGTGAAG
*
77522 TTG-AAATTGGCTCT-AAATTTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTAGTGAAGT
131 TTGAAAACTGGCTCTGAAA-TTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTAGTGAAGT
77585 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAG
195 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAG
*
77650 AAGTTATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
260 AA-ATATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
77715 ATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGT
324 ATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGT
77780 CCCTTCGTCGCGAAGTTGAACTTGCGTTGTCTA
389 CCCTTCGTCGCGAAGTTGAACTTGCGTTGTCTA
77813 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
77853 GGTAAAACCT
Statistics
Matches: 438, Mismatches: 21, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
419 3 0.01
420 118 0.27
421 317 0.72
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (421 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTCGTTGTGAAG
TTGAAAACTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTAGTGAAGTT
GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGA
AATATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
ATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACCAGCGGTCC
CTTCGTCGCGAAGTTGAACTTGCGTTGTCTA
Found at i:78714 original size:63 final size:64
Alignment explanation
Indices: 78610--78733 Score: 171
Period size: 63 Copynumber: 1.9 Consensus size: 64
78600 CCTTATTTTC
* * * *
78610 TCTTCTTTTTTCCTCTTTTTCTTTTTTCAATTTAGGGCGCCCTTTTGGGTTTTCACCCTAAACGT
1 TCTTCTTTTTT-CTCTTTTTCTTTTTCCAACTTAGGACGCCCTCTTGGGTTTTCACCCTAAACGT
*
78675 TCTTCTCTTTTT-TCTTTTT-TTTTTCCAACTTAGGACGCCCTCTTGGGTTTTCATCCTAA
1 TCTTCT-TTTTTCTCTTTTTCTTTTTCCAACTTAGGACGCCCTCTTGGGTTTTCACCCTAA
78734 GCGAAGTATT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
63 35 0.66
64 7 0.13
65 6 0.11
66 5 0.09
ACGTcount: A:0.11, C:0.25, G:0.11, T:0.52
Consensus pattern (64 bp):
TCTTCTTTTTTCTCTTTTTCTTTTTCCAACTTAGGACGCCCTCTTGGGTTTTCACCCTAAACGT
Found at i:88140 original size:10 final size:10
Alignment explanation
Indices: 88115--88148 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
88105 AAGGTTAGTA
*
88115 AAATAGAAAT
1 AAATAAAAAT
*
88125 AGATAAAAAT
1 AAATAAAAAT
88135 AAATAAAAAT
1 AAATAAAAAT
88145 AAAT
1 AAAT
88149 GGTAAATGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:89147 original size:11 final size:10
Alignment explanation
Indices: 89133--89208 Score: 62
Period size: 10 Copynumber: 7.2 Consensus size: 10
89123 TAAATGACTT
*
89133 AAAAAAAGTA
1 AAAAAAAATA
*
89143 AAAAAAGATA
1 AAAAAAAATA
89153 AAACAAACAATA
1 AAA-AAA-AATA
89165 AAAATAAAATA
1 AAAA-AAAATA
* *
89176 AAATAAGATA
1 AAAAAAAATA
*
89186 ATAAACAAATA
1 A-AAAAAAATA
*
89197 AAATAAAATA
1 AAAAAAAATA
89207 AA
1 AA
89209 CAAATAAACA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
10 26 0.50
11 18 0.35
12 8 0.15
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:89175 original size:5 final size:5
Alignment explanation
Indices: 89165--89208 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
89155 ACAAACAATA
*
89165 AAAAT AAAAT AAAAT AAGAT AATAA- ACAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AA-AAT A-AAAT AAAAT AAAAT AAA
89209 CAAATAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 31 0.91
6 3 0.09
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:89186 original size:21 final size:20
Alignment explanation
Indices: 89132--89208 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
89122 ATAAATGACT
* *
89132 TAAAA-AAAGTAAAAAAAGA
1 TAAAATAAAATAAAAAAAAA
*
89151 TAAAACAAACAATAAAAATAAAA
1 TAAAA-TAA-AATAAAAA-AAAA
* *
89174 TAAAATAAGATAATAAACAAA
1 TAAAATAAAATAA-AAAAAAA
89195 TAAAATAAAATAAA
1 TAAAATAAAATAAA
89209 CAAATAAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
19 5 0.11
20 1 0.02
21 21 0.45
22 12 0.26
23 8 0.17
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.16
Consensus pattern (20 bp):
TAAAATAAAATAAAAAAAAA
Found at i:89195 original size:26 final size:26
Alignment explanation
Indices: 89150--89221 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
89140 GTAAAAAAAG
*
89150 ATAAAACAAAC-AAT-AA-AAATAAA
1 ATAAAATAAACAAATAAACAAATAAA
*
89173 ATAAAATAAGA-TAATAAACAAATAAA
1 ATAAAATAA-ACAAATAAACAAATAAA
89199 ATAAAATAAACAAATAAACAAAT
1 ATAAAATAAACAAATAAACAAAT
89222 TAGAAAAACC
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 8 0.19
24 4 0.10
25 3 0.07
26 27 0.64
ACGTcount: A:0.75, C:0.07, G:0.01, T:0.17
Consensus pattern (26 bp):
ATAAAATAAACAAATAAACAAATAAA
Found at i:89581 original size:35 final size:34
Alignment explanation
Indices: 89532--89606 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 34
89522 TACTATTAGT
*
89532 TAAAAACAAAAATAATAAGTAAAAT-ATATAT-A-AA
1 TAAATACAAAAATAA-AA--AAAATAATATATAATAA
89566 TAAATACATAAAATAAAAAAAATAATATATAATAA
1 TAAATACA-AAAATAAAAAAAATAATATATAATAA
89601 TAAATA
1 TAAATA
89607 AAGAAACGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
32 5 0.14
33 6 0.17
34 10 0.28
35 15 0.42
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (34 bp):
TAAATACAAAAATAAAAAAAATAATATATAATAA
Found at i:89588 original size:22 final size:22
Alignment explanation
Indices: 89563--89604 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
89553 AAATATATAT
89563 AAATAAATACATAA-AATAAAAA
1 AAAT-AATACATAATAATAAAAA
*
89585 AAATAATATATAATAATAAA
1 AAATAATACATAATAATAAA
89605 TAAAGAAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAATACATAATAATAAAAA
Found at i:89787 original size:11 final size:11
Alignment explanation
Indices: 89744--89796 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 11
89734 ATAAAACGAA
89744 ATAAGTATATAT
1 ATAA-TATATAT
*
89756 ATATATATATAC
1 ATA-ATATATAT
89768 ATAATAATAATAAT
1 ATAAT-AT-AT-AT
89782 ATAATATATAT
1 ATAATATATAT
89793 ATAA
1 ATAA
89797 AACGTAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
11 8 0.23
12 16 0.46
13 5 0.14
14 6 0.17
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (11 bp):
ATAATATATAT
Found at i:89811 original size:2 final size:2
Alignment explanation
Indices: 89749--89795 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
89739 ACGAAATAAG
*
89749 TA TA TA TA TA TA TA TA TA CA TA -A TA -A TA -A TA -A TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
89786 TA TA TA TA TA
1 TA TA TA TA TA
89796 AAACGTAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
1 5 0.13
2 33 0.87
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:90974 original size:19 final size:19
Alignment explanation
Indices: 90952--90988 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
90942 AAAACGAAAA
*
90952 TAATTTATATATATATATG
1 TAATATATATATATATATG
*
90971 TAATATATATGTATATAT
1 TAATATATATATATATAT
90989 AAATAGTGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TAATATATATATATATATG
Found at i:105108 original size:16 final size:16
Alignment explanation
Indices: 105087--105124 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
105077 TTTCGTTGCC
*
105087 ATAGCTTCTATTACGG
1 ATAGCTTCTATTACAG
105103 ATAGCTTCTATTACAG
1 ATAGCTTCTATTACAG
105119 ATAGCT
1 ATAGCT
105125 CCCACTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (16 bp):
ATAGCTTCTATTACAG
Found at i:106358 original size:26 final size:24
Alignment explanation
Indices: 106313--106362 Score: 57
Period size: 27 Copynumber: 2.0 Consensus size: 24
106303 AGTATAAAAC
106313 AAATAAAAATTAAAGTAAATTAAATT
1 AAATAAAAATTAAAG-AAA-TAAATT
106339 AAATAAAAAATTAATA-AAATAAAT
1 AAAT-AAAAATTAA-AGAAATAAAT
106363 AAAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
25 5 0.23
26 7 0.32
27 9 0.41
28 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (24 bp):
AAATAAAAATTAAAGAAATAAATT
Found at i:106373 original size:16 final size:16
Alignment explanation
Indices: 106306--106376 Score: 58
Period size: 16 Copynumber: 4.6 Consensus size: 16
106296 TATGGTTAGT
*
106306 ATAAAACAAATAAAAA
1 ATAAAATAAATAAAAA
* * *
106322 TTAAAGTAAAT--TAA
1 ATAAAATAAATAAAAA
* *
106336 ATTAAATAAA-AAATTA
1 ATAAAATAAATAAA-AA
106352 ATAAAATAAATAAAAA
1 ATAAAATAAATAAAAA
106368 ATAAAATAA
1 ATAAAATAA
106377 CATTCAAATC
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
14 9 0.22
16 28 0.70
17 3 0.08
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (16 bp):
ATAAAATAAATAAAAA
Found at i:107682 original size:38 final size:36
Alignment explanation
Indices: 107617--107858 Score: 156
Period size: 35 Copynumber: 6.8 Consensus size: 36
107607 GGGAAAGGAA
* *
107617 AAAAAGTTTTCAAAATCTTATAGTATATATAAATTTT-C
1 AAAAAGTTTTCAAAAT-ATATA-T-TATATATATTTTCC
*
107655 AAAATGTTTTCTAAAATATATATTATATATATTTTCC
1 AAAAAGTTTTC-AAAATATATATTATATATATTTTCC
* *
107692 AAAACGCTTTC---A-A-A-A-T-TATATATTTT-C
1 AAAAAGTTTTCAAAATATATATTATATATATTTTCC
* *
107719 AAAACGTTTTCAAAAT-TATAT-ACTATATATTTTCT
1 AAAAAGTTTTCAAAATATATATTA-TATATATTTTCC
107754 AAAACA-TTTTCAAAATA-ATA-TACTATATATTTT-C
1 AAAA-AGTTTTCAAAATATATATTA-TATATATTTTCC
**
107788 AAAAATGTTTTCAAAACTATATATTATATATATATTTTTG
1 AAAAA-GTTTTCAAAA-TATATA-T-TATATATATTTTCC
* *
107828 AAAATGTTTTAAAAACTATATATGTATATAT
1 AAAAAGTTTTCAAAA-TATATAT-TATATAT
107859 TAAATAGAAC
Statistics
Matches: 168, Mismatches: 13, Indels: 46
0.74 0.06 0.20
Matches are distributed among these distances:
27 11 0.07
28 10 0.06
29 1 0.01
30 2 0.01
31 2 0.01
32 2 0.01
33 2 0.01
34 14 0.08
35 38 0.23
36 13 0.08
37 14 0.08
38 22 0.13
39 31 0.18
40 6 0.04
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (36 bp):
AAAAAGTTTTCAAAATATATATTATATATATTTTCC
Found at i:107729 original size:27 final size:28
Alignment explanation
Indices: 107680--107740 Score: 106
Period size: 27 Copynumber: 2.2 Consensus size: 28
107670 ATATATATTA
107680 TATATATTTTCCAAAACGCTTTCAAAAT
1 TATATATTTTCCAAAACGCTTTCAAAAT
*
107708 TATATATTTT-CAAAACGTTTTCAAAAT
1 TATATATTTTCCAAAACGCTTTCAAAAT
107735 TATATA
1 TATATA
107741 CTATATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 22 0.69
28 10 0.31
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.43
Consensus pattern (28 bp):
TATATATTTTCCAAAACGCTTTCAAAAT
Found at i:107765 original size:35 final size:34
Alignment explanation
Indices: 107708--107818 Score: 159
Period size: 35 Copynumber: 3.2 Consensus size: 34
107698 CTTTCAAAAT
107708 TATATATTTTCAAAACGTTTTCAAAATTATATAC
1 TATATATTTTCAAAACGTTTTCAAAATTATATAC
* *
107742 TATATATTTTCTAAAACATTTTCAAAATAATATAC
1 TATATATTTTC-AAAACGTTTTCAAAATTATATAC
* * *
107777 TATATATTTTCAAAAATGTTTTCAAAACTATATAT
1 TATATATTTTC-AAAACGTTTTCAAAATTATATAC
107812 TATATAT
1 TATATAT
107819 ATATTTTTGA
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
34 11 0.16
35 57 0.84
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (34 bp):
TATATATTTTCAAAACGTTTTCAAAATTATATAC
Found at i:107768 original size:62 final size:64
Alignment explanation
Indices: 107644--107820 Score: 182
Period size: 62 Copynumber: 2.7 Consensus size: 64
107634 TTATAGTATA
* * *
107644 TATAAATTTTCAAAATGTTTTCTAAAATATATATTATATATATTTTCCAAAACGCTTTCAAAAT
1 TATATATTTTCAAAACGTTTTCTAAAATATATATTATATATATTTTCCAAAACACTTTCAAAAT
* *
107708 TATATATTTTCAAAACGTTTTC-AAAAT-TATA-TACTATATATTTTCTAAAACATTTTCAAAAT
1 TATATATTTTCAAAACGTTTTCTAAAATATATATTA-TATATATTTTCCAAAACACTTTC---A-
107770 AATAT
61 AA-AT
*
107775 ACTATATATTTTCAAAAATGTTTTC-AAAACTATATATTATATATAT
1 --TATATATTTTC-AAAACGTTTTCTAAAA-TATATATTATATATAT
107821 ATTTTTGAAA
Statistics
Matches: 95, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
61 2 0.02
62 24 0.25
63 5 0.05
64 20 0.21
65 1 0.01
66 2 0.02
67 2 0.02
69 11 0.12
70 14 0.15
71 1 0.01
72 11 0.12
73 2 0.02
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (64 bp):
TATATATTTTCAAAACGTTTTCTAAAATATATATTATATATATTTTCCAAAACACTTTCAAAAT
Found at i:107802 original size:97 final size:100
Alignment explanation
Indices: 107617--107812 Score: 242
Period size: 97 Copynumber: 2.0 Consensus size: 100
107607 GGGAAAGGAA
**
107617 AAAAAGTTTTCAAAATCTTATAGTATATATAAATTTTCAAAATGTTTTCTAAAATATATATTATA
1 AAAAAGTTTTCAAAA-CTTATAGTATATAT-AATTTTCAAAACATTTTCTAAAATATATATTATA
* *
107682 TATATTTTCCAAAACGCTTTCAAAATTATATATTTTC
64 TATATTTTCAAAAACGCTTTCAAAACTATATATTTTC
*
107719 AAAACGTTTTCAAAA-TTATA-TACTATAT-ATTTTCTAAAACATTTTC-AAAATA-ATA-TACT
1 AAAAAGTTTTCAAAACTTATAGTA-TATATAATTTTC-AAAACATTTTCTAAAATATATATTA-T
* *
107778 ATATATTTTCAAAAATGTTTTCAAAACTATATATT
63 ATATATTTTCAAAAACGCTTTCAAAACTATATATT
107813 ATATATATAT
Statistics
Matches: 84, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
96 2 0.02
97 35 0.42
98 12 0.14
99 11 0.13
100 10 0.12
102 14 0.17
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (100 bp):
AAAAAGTTTTCAAAACTTATAGTATATATAATTTTCAAAACATTTTCTAAAATATATATTATATA
TATTTTCAAAAACGCTTTCAAAACTATATATTTTC
Found at i:114540 original size:44 final size:43
Alignment explanation
Indices: 114463--114552 Score: 119
Period size: 44 Copynumber: 2.1 Consensus size: 43
114453 ATCCCACACG
* *
114463 GAATTAAAAAAAATTAAATTCAAAGGAGAATGAAACGAAGTACA
1 GAATGAAAAAAAATTAAATTCAAAGAAGAATGAAACGAAGTA-A
* *
114507 GAATGAAAGAAAATTAAATTCAAAAGAAG-ATGAAATGAAGTAA
1 GAATGAAAAAAAATTAAATTC-AAAGAAGAATGAAACGAAGTAA
114550 GAA
1 GAA
114553 AAATGTTTGT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
43 4 0.10
44 31 0.76
45 6 0.15
ACGTcount: A:0.60, C:0.04, G:0.18, T:0.18
Consensus pattern (43 bp):
GAATGAAAAAAAATTAAATTCAAAGAAGAATGAAACGAAGTAA
Found at i:118664 original size:33 final size:33
Alignment explanation
Indices: 118627--118689 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
118617 GAAGTCTTTT
* *
118627 GTTGTTCTTTCAAGGACTTTTTTTCATCTTTAA
1 GTTGTTCTTTCAAGGACTCTTATTCATCTTTAA
118660 GTTGTTCTTTCAAGGACTCTTATTCATCTT
1 GTTGTTCTTTCAAGGACTCTTATTCATCTT
118690 GTCCTTTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.52
Consensus pattern (33 bp):
GTTGTTCTTTCAAGGACTCTTATTCATCTTTAA
Found at i:120222 original size:3 final size:3
Alignment explanation
Indices: 120214--120245 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
120204 TTTCATTACA
*
120214 TTC TTC TTC TTC TTC TTC TTA TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
120246 ACGTTAACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:132795 original size:91 final size:91
Alignment explanation
Indices: 132647--132819 Score: 310
Period size: 91 Copynumber: 1.9 Consensus size: 91
132637 CTAATGTGCC
132647 TTGCATATGACCAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGATGAAGAGTTCT
1 TTGCATATGACCAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGATGAAGAGTTCT
132712 CTCCCTATTCAGCCAAGACATGTGTT
66 CTCCCTATTCAGCCAAGACATGTGTT
* * *
132738 TTGCATGTGATCAGCCCCCATGTGCCTTGCATATGGTTCATTTAGGCGCCAAGATGAAGAGTTCT
1 TTGCATATGACCAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGATGAAGAGTTCT
*
132803 CTCCCTATTCGGCCAAG
66 CTCCCTATTCAGCCAAG
132820 CATTAGCTAC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (91 bp):
TTGCATATGACCAGCCCCCATGTGCCTTGCATATGGATCATTTAGGCGCCAAGATGAAGAGTTCT
CTCCCTATTCAGCCAAGACATGTGTT
Found at i:136438 original size:13 final size:13
Alignment explanation
Indices: 136420--136445 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
136410 TGGCCAAAGA
136420 TGAAAAGGTATGT
1 TGAAAAGGTATGT
136433 TGAAAAGGTATGT
1 TGAAAAGGTATGT
136446 GAGAGGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:139613 original size:17 final size:18
Alignment explanation
Indices: 139591--139625 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
139581 CGATACTGAT
139591 TGAAGT-AGAATCGATAC
1 TGAAGTGAGAATCGATAC
*
139608 TGAAGTGGGAATCGATAC
1 TGAAGTGAGAATCGATAC
139626 CTAAGGTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.23
Consensus pattern (18 bp):
TGAAGTGAGAATCGATAC
Found at i:140330 original size:21 final size:21
Alignment explanation
Indices: 140304--140364 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
140294 GAGGGTTCTA
*
140304 TGTGGTCCTTTGGGACAAACT
1 TGTGGTCCTTTGGGACAAACC
140325 TGTGGTCCTTTGGGACAAACC
1 TGTGGTCCTTTGGGACAAACC
* *
140346 TATGGTTCTTTGGGACAAA
1 TGTGGTCCTTTGGGACAAA
140365 TATGTGGCAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (21 bp):
TGTGGTCCTTTGGGACAAACC
Done.