Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005147.1 Hibiscus syriacus cultivar Beakdansim tig00011593_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70043

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
797--852
3
18.7
3
96
0
103
32
1
0
66
1.03
9528--9566
21
1.9
20
84
5
51
35
20
15
28
1.93
11239--12064
417
2.0
417
94
0
1454
31
19
21
27
1.97
19294--19330
3
12.3
3
100
0
74
35
0
0
64
0.94
23573--23625
24
2.1
26
83
13
67
20
3
0
75
0.96
26088--26268
99
1.8
99
95
0
326
32
19
18
29
1.96
28099--28403
83
3.6
83
87
1
439
35
20
17
25
1.95
28099--28403
167
1.8
167
87
2
459
35
20
17
25
1.95
29047--29086
17
2.2
18
91
8
64
32
2
0
65
1.06
30347--30404
24
2.3
26
82
14
77
24
3
0
72
1.00
33062--33095
16
2.2
15
89
5
50
5
32
0
61
1.20
39291--39320
15
2.0
15
93
0
51
26
16
0
56
1.40
40575--40629
23
2.4
23
96
0
101
36
16
18
29
1.92
40859--40901
23
1.9
22
90
4
68
60
9
0
30
1.28
47378--47446
32
2.1
34
94
5
124
11
7
40
40
1.69
50652--50695
23
1.9
23
85
0
61
54
6
2
36
1.40
57161--57203
6
7.0
6
89
5
68
81
2
2
13
0.89
64552--64707
27
5.9
28
68
23
88
45
0
1
52
1.11
64548--64611
23
2.8
22
86
11
76
48
0
1
50
1.10
64856--64914
22
2.7
22
81
7
66
52
0
1
45
1.10
65086--65162
30
2.6
29
91
4
136
33
18
7
40
1.79
65086--65160
15
5.1
15
80
3
98
32
18
8
41
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68488--68522
16
2.2
16
89
0
52
48
0
0
51
1.00
69469--69513
22
2.0
23
83
12
58
31
15
17
35
1.92

Tables:   1

The End!