Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005149.1 Hibiscus syriacus cultivar Beakdansim tig00011602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63444

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1064--1189
58
2.1
61
92
7
213
19
19
37
23
1.94
1353--1537
93
2.0
89
88
6
273
22
11
18
47
1.81
1809--1875
21
3.2
21
66
6
55
23
35
20
19
1.95
1757--1875
42
2.8
42
76
12
102
23
36
17
22
1.95
3218--3253
14
2.6
14
95
0
63
30
0
25
44
1.54
3376--3432
14
3.7
14
72
20
51
45
22
24
7
1.77
3358--3447
33
2.7
33
92
0
144
44
21
22
12
1.85
3358--3418
19
3.5
19
74
21
69
44
21
22
11
1.84
3447--3573
33
3.9
32
86
8
184
14
22
19
43
1.88
3440--3572
66
2.0
66
95
0
239
16
21
19
42
1.89
6052--6105
24
2.2
24
90
0
81
38
20
16
24
1.92
7151--7188
20
1.9
20
94
0
67
39
23
21
15
1.92
7211--7284
19
4.5
16
83
16
66
13
20
18
47
1.82
7207--7274
19
3.8
19
87
12
101
13
22
17
47
1.82
7389--7425
14
2.6
14
86
0
56
48
21
0
29
1.50
9268--9323
20
2.9
19
86
5
85
35
23
25
16
1.94
9323--9417
14
6.3
14
75
18
84
49
24
16
9
1.75
9307--9413
32
3.3
32
96
1
187
45
24
18
11
1.82
9424--9519
19
5.6
17
70
21
69
10
20
22
45
1.81
9446--9503
14
3.9
14
77
16
62
6
18
25
48
1.73
9429--9519
32
2.8
32
91
3
146
9
19
23
47
1.79
9504--9547
20
2.3
19
84
11
54
20
25
18
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10040--10084
18
2.5
18
88
0
72
13
15
44
26
1.83
10873--10922
20
2.5
20
93
3
84
26
30
18
26
1.98
11414--11472
20
3.0
20
84
0
64
42
23
18
15
1.88
11734--11777
22
2.0
22
95
0
79
18
15
45
20
1.85
11963--12076
20
5.7
20
82
6
122
24
18
26
30
1.98
11943--12078
41
3.3
41
79
6
159
24
17
25
33
1.97
11943--12098
41
3.8
41
76
3
109
23
19
24
33
1.97
16210--16589
187
2.0
187
97
0
715
40
12
15
31
1.84
27284--27318
10
3.5
10
92
0
61
14
0
0
85
0.59
35780--35874
30
3.2
30
81
14
92
28
27
28
15
1.96
35780--35896
50
2.3
50
92
0
198
29
24
26
18
1.98
35780--35879
10
10.1
10
73
20
77
30
26
28
16
1.96
40598--40642
15
3.0
15
87
6
56
28
6
13
51
1.66
45532--45579
24
2.1
22
85
11
62
29
12
0
58
1.35
49106--49183
35
2.4
32
82
14
97
35
14
33
16
1.89
49244--49333
4
24.0
4
67
17
50
48
1
0
50
1.08
49244--49333
6
16.0
6
75
17
50
48
1
0
50
1.08
49244--49333
42
2.2
40
88
5
135
48
1
0
50
1.08
60797--60908
45
2.5
45
84
5
147
43
6
9
40
1.63
61933--61973
4
10.2
4
94
0
73
26
0
21
51
1.48

Tables:   1

The End!