genome.fa.s515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000515.1 Hibiscus syriacus cultivar Beakdansim tig00000982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59636

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9297--9335	21	1.9	20	84	5	51	28	15	20	35	1.93
23433--23637	54	3.9	51	80	10	213	37	14	21	25	1.92
24007--24061	22	2.5	22	90	0	92	34	12	14	38	1.84
24460--25529	113	9.5	113	97	0	1987	39	16	17	27	1.90
25326--25661	186	1.8	185	92	1	566	37	15	16	30	1.90
25439--25605	73	2.3	73	88	3	248	36	16	14	32	1.89
25213--25834	299	2.1	301	89	2	957	38	15	17	29	1.90
25326--25718	186	2.1	186	87	2	558	37	15	17	30	1.90
25514--25870	116	3.2	113	83	6	465	38	14	18	28	1.90
25815--25905	36	2.5	36	90	0	137	52	9	18	18	1.72
26156--26247	3	31.0	3	86	2	132	39	0	0	60	0.97
28280--28359	21	3.9	21	73	15	62	36	2	1	60	1.18
28294--28342	24	2.1	22	85	7	62	34	2	2	61	1.19
29966--30013	14	3.4	14	82	5	51	27	12	10	50	1.73
29971--30013	15	2.9	15	86	3	52	25	13	11	48	1.77
32841--32868	2	14.0	2	100	0	56	50	0	0	50	1.00
35447--35787	114	3.0	114	94	0	574	33	15	20	31	1.94
37878--38078	54	3.8	53	84	5	230	38	14	21	24	1.91
38450--38504	22	2.5	22	90	0	92	34	12	14	38	1.84
38904--40425	113	13.5	113	97	0	2873	39	16	17	27	1.90
40222--40557	186	1.8	185	92	1	566	37	15	16	30	1.90
40335--40501	73	2.3	73	88	3	248	36	16	14	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40109--40730	299	2.1	301	88	3	932	38	15	17	29	1.90
40222--40614	186	2.1	186	86	3	551	37	15	17	30	1.90
40410--40766	116	3.2	112	83	7	456	38	14	18	29	1.89
40711--40801	36	2.5	36	90	0	137	52	9	18	18	1.72
41051--41130	3	26.7	3	87	0	115	36	0	1	62	1.03
44581--44644	19	3.4	19	97	0	119	45	15	4	34	1.67
47980--48023	21	2.1	21	91	0	70	29	25	18	27	1.98
49791--49833	15	2.9	15	80	13	61	58	2	0	39	1.11
52175--52202	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!