Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005150.1 Hibiscus syriacus cultivar Beakdansim tig00011605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 126880
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
File 1 of 2
Found at i:3913 original size:31 final size:30
Alignment explanation
Indices: 3874--3944 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 30
3864 GAGTCGAGGG
*
3874 TTACCTATGTCTTTCGAGATATATGGACAA
1 TTACCTATGTCTTTCGAGACATATGGACAA
*
3904 TGTACCTATGTCTTTTGAGACATATGGACAA
1 T-TACCTATGTCTTTCGAGACATATGGACAA
*
3935 TTAACTATGT
1 TTACCTATGT
3945 TCTTCGGAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 9 0.24
31 28 0.76
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (30 bp):
TTACCTATGTCTTTCGAGACATATGGACAA
Found at i:3957 original size:30 final size:31
Alignment explanation
Indices: 3878--3958 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
3868 CGAGGGTTAC
* *
3878 CTATGTCTTTC-GAGATATATGGACAATGTAC
1 CTATGTC-TTCGGAGACATATGGACAATGTAA
**
3909 CTATGTCTTTTGAGACATATGGACAAT-TAA
1 CTATGTCTTCGGAGACATATGGACAATGTAA
3939 CTATGTTCTTCGGA-ACATAT
1 CTATG-TCTTCGGAGACATAT
3959 AGATAGGTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
30 15 0.35
31 28 0.65
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (31 bp):
CTATGTCTTCGGAGACATATGGACAATGTAA
Found at i:4182 original size:24 final size:24
Alignment explanation
Indices: 4150--4209 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
4140 ATTTATATTG
4150 ATTTATATATATATCATATGACTA
1 ATTTATATATATATCATATGACTA
* *
4174 ATTTCTATATATATCATATGACTG
1 ATTTATATATATATCATATGACTA
4198 ATTTATGATATA
1 ATTTAT-ATATA
4210 ATGAACATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 27 0.84
25 5 0.16
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (24 bp):
ATTTATATATATATCATATGACTA
Found at i:6132 original size:22 final size:23
Alignment explanation
Indices: 6107--6151 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
6097 GAGTACATGA
*
6107 TGGTGTAAT-AAATTATAGGAAT
1 TGGTATAATGAAATTATAGGAAT
*
6129 TGGTATAATGAAATTATATGAAT
1 TGGTATAATGAAATTATAGGAAT
6152 AAGTGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (23 bp):
TGGTATAATGAAATTATAGGAAT
Found at i:6691 original size:21 final size:23
Alignment explanation
Indices: 6665--6722 Score: 84
Period size: 21 Copynumber: 2.6 Consensus size: 23
6655 TCCTTAAGGA
*
6665 GTGGTCCTTCGGGACA-T-ATAT
1 GTGGTCCTTCGGGACATTCATAC
*
6686 GTGGTCCTTCGGGACATTCCTAC
1 GTGGTCCTTCGGGACATTCATAC
6709 GTGGTCCTTCGGGA
1 GTGGTCCTTCGGGA
6723 AAAATTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 16 0.48
22 1 0.03
23 16 0.48
ACGTcount: A:0.14, C:0.24, G:0.31, T:0.31
Consensus pattern (23 bp):
GTGGTCCTTCGGGACATTCATAC
Found at i:7011 original size:4 final size:4
Alignment explanation
Indices: 7004--7030 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6994 TATATATATA
7004 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
7031 TTGTTACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:11094 original size:56 final size:56
Alignment explanation
Indices: 11021--11198 Score: 200
Period size: 56 Copynumber: 3.1 Consensus size: 56
11011 ATTTATGTGA
* * * *
11021 ATATGTTCTATGGGAATAAATGATAATTTGAATAATGTATATGAAAAACTATGAGT
1 ATATGTTCAATGTGAATAAATGATAATTTGAGTAATGTATATGAAATACTATGAGT
* *
11077 ATATGTTCAATGTGAATAAATGATAAGTTGAGTAATGTGATATGAAATGCTATGAG-
1 ATATGTTCAATGTGAATAAATGATAATTTGAGTAATGT-ATATGAAATACTATGAGT
* * *
11133 AAATTGTT-ATATGTGAATAAATAATAAATTT-AGGTAATGTTATGTGAAATACTATGAGT
1 ATA-TGTTCA-ATGTGAATAAATGAT-AATTTGA-GTAATG-TATATGAAATACTATGAGT
11192 ATATGTT
1 ATATGTT
11199 TTATGTAACA
Statistics
Matches: 103, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
56 37 0.36
57 34 0.33
58 29 0.28
59 3 0.03
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.37
Consensus pattern (56 bp):
ATATGTTCAATGTGAATAAATGATAATTTGAGTAATGTATATGAAATACTATGAGT
Found at i:12180 original size:15 final size:14
Alignment explanation
Indices: 12159--12192 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
12149 CATGGAGTCT
12159 CATATCTCATTATCA
1 CATATCTCA-TATCA
*
12174 TATATCTCATATCA
1 CATATCTCATATCA
12188 CATAT
1 CATAT
12193 TCTTGCATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (14 bp):
CATATCTCATATCA
Found at i:13836 original size:24 final size:24
Alignment explanation
Indices: 13800--13859 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
13790 TCATTTGGGA
* *
13800 CAAA-TCTATATGGCACTTTGGTG
1 CAAATTCTACATGGCACTTCGGTG
*
13823 CATATTCTACATGGCACTTCGGTG
1 CAAATTCTACATGGCACTTCGGTG
13847 CAAATTCTACATG
1 CAAATTCTACATG
13860 ATAGTTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 3 0.09
24 29 0.91
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (24 bp):
CAAATTCTACATGGCACTTCGGTG
Found at i:18768 original size:15 final size:16
Alignment explanation
Indices: 18750--18784 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
18740 CTAAAGGAGG
*
18750 GGTACCGATACCAT-A
1 GGTACCAATACCATCA
18765 GGTACCAATACCATCA
1 GGTACCAATACCATCA
18781 GGTA
1 GGTA
18785 GGTATCAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (16 bp):
GGTACCAATACCATCA
Found at i:22247 original size:58 final size:59
Alignment explanation
Indices: 22182--22403 Score: 235
Period size: 58 Copynumber: 3.9 Consensus size: 59
22172 ATTTATGTAA
* *
22182 ATATGTTCTATGGGAATAAATGATAAATTTGAATAAT-TCTATATGAAAAACTATGAGT
1 ATATGTTCTATGTGAATAAATGATAAATTTGAATAATATCTATATGAAATACTATGAGT
* * * * *
22240 ATATGTTCTATGTGAATAAATGAT-AAGTTGAGTAATGT-GATATGAAATTCTATGAG-
1 ATATGTTCTATGTGAATAAATGATAAATTTGAATAATATCTATATGAAATACTATGAGT
* * * * *
22296 AAATTGTTCTATGTGAATAAATAATAAATTT-AGGT-ATAGCTATGTGAAATACTATGAGT
1 ATA-TGTTCTATGTGAATAAATGATAAATTTGA-ATAATATCTATATGAAATACTATGAGT
* * *
22355 ATATGTTTTATGTGAACAAATGATAAA-TTGAATAATA-CTATGTGAAATA
1 ATATGTTCTATGTGAATAAATGATAAATTTGAATAATATCTATATGAAATA
22404 ATTAAATGGT
Statistics
Matches: 137, Mismatches: 19, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
56 2 0.01
57 63 0.46
58 70 0.51
59 2 0.01
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (59 bp):
ATATGTTCTATGTGAATAAATGATAAATTTGAATAATATCTATATGAAATACTATGAGT
Found at i:22323 original size:115 final size:116
Alignment explanation
Indices: 22180--22390 Score: 293
Period size: 115 Copynumber: 1.8 Consensus size: 116
22170 TGATTTATGT
* *
22180 AAATATGTTCTATGGGAATAAATGATAAATTT-GA-ATAATTCTATATGAAAAACTATGAGTATA
1 AAATATGTTCTATGGGAATAAATAATAAATTTAGATAT-A-GCTATATGAAAAACTATGAGTATA
* * *
22243 TGTTCTATGTGAATAAATGATAAGTTGAGTAATGTGATATGAAATTCTATGAG
64 TGTTCTATGTGAACAAATGATAAATTGAATAATGTGATATGAAATTCTATGAG
* * * *
22296 AAAT-TGTTCTATGTGAATAAATAATAAATTTAGGTATAGCTATGTGAAATACTATGAGTATATG
1 AAATATGTTCTATGGGAATAAATAATAAATTTAGATATAGCTATATGAAAAACTATGAGTATATG
*
22360 TTTTATGTGAACAAATGATAAATTGAATAAT
66 TTCTATGTGAACAAATGATAAATTGAATAAT
22391 ACTATGTGAA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
115 75 0.90
116 6 0.07
117 2 0.02
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.37
Consensus pattern (116 bp):
AAATATGTTCTATGGGAATAAATAATAAATTTAGATATAGCTATATGAAAAACTATGAGTATATG
TTCTATGTGAACAAATGATAAATTGAATAATGTGATATGAAATTCTATGAG
Found at i:22509 original size:23 final size:23
Alignment explanation
Indices: 22483--22554 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
22473 GGATCTACGC
22483 GGTCTTTCGGGACAATTCTATGT
1 GGTCTTTCGGGACAATTCTATGT
* * *
22506 GGTCCTTCGGGATAAATTGTATGT
1 GGTCTTTCGGGA-CAATTCTATGT
* *
22530 GGTCATTT-GAGACAAATCTATGT
1 GGTC-TTTCGGGACAATTCTATGT
22553 GG
1 GG
22555 CACTTCGATG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
23 21 0.54
24 16 0.41
25 2 0.05
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (23 bp):
GGTCTTTCGGGACAATTCTATGT
Found at i:22546 original size:24 final size:24
Alignment explanation
Indices: 22483--22597 Score: 71
Period size: 24 Copynumber: 4.9 Consensus size: 24
22473 GGATCTACGC
* *
22483 GGTCTTTCGGGAC-AATTCTATGT
1 GGTCATTCGAGACAAATTCTATGT
* * * *
22506 GGTCCTTCGGGATAAATTGTATGT
1 GGTCATTCGAGACAAATTCTATGT
*
22530 GGTCATTTGAGACAAA-TCTATGT
1 GGTCATTCGAGACAAATTCTATGT
* *
22553 GG-CACTTCGATG-CATATTCTACGT
1 GGTCA-TTCGA-GACAAATTCTATGT
22577 GGT-ACTTCGATG-CAAATTCTA
1 GGTCA-TTCGA-GACAAATTCTA
22598 CGCGGCAGTT
Statistics
Matches: 75, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
22 2 0.03
23 26 0.35
24 47 0.63
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (24 bp):
GGTCATTCGAGACAAATTCTATGT
Found at i:22598 original size:24 final size:24
Alignment explanation
Indices: 22542--22604 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
22532 TCATTTGAGA
*
22542 CAAA-TCTATGTGGCACTTCGATG
1 CAAATTCTACGTGGCACTTCGATG
* *
22565 CATATTCTACGTGGTACTTCGATG
1 CAAATTCTACGTGGCACTTCGATG
*
22589 CAAATTCTACGCGGCA
1 CAAATTCTACGTGGCA
22605 GTTTCGACTG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 3 0.09
24 30 0.91
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (24 bp):
CAAATTCTACGTGGCACTTCGATG
Found at i:24376 original size:32 final size:32
Alignment explanation
Indices: 24335--24407 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
24325 ACATTATCAA
* *
24335 AATGAAACATTGACACT-CATGTGCATTATTTG
1 AATGAAACATTGACACTGC-TATGCATTATATG
* *
24367 AATGTAACATTGACTCTGCTATGCATTATATG
1 AATGAAACATTGACACTGCTATGCATTATATG
*
24399 AATGCAACA
1 AATGAAACA
24408 CTGGTAGTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 34 0.97
33 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (32 bp):
AATGAAACATTGACACTGCTATGCATTATATG
Found at i:25391 original size:20 final size:20
Alignment explanation
Indices: 25366--25496 Score: 226
Period size: 20 Copynumber: 6.5 Consensus size: 20
25356 CAAAATGAGT
* *
25366 AGTATCGATACTCTATTTAC
1 AGTATCGATACTCTACTTGC
*
25386 AGTATCGATACTCTACTTAC
1 AGTATCGATACTCTACTTGC
25406 AGTATCGATACTCTACTTGC
1 AGTATCGATACTCTACTTGC
25426 AGTATCGATACTCTACTTGC
1 AGTATCGATACTCTACTTGC
25446 AGTATCGATACTCTACTTGC
1 AGTATCGATACTCTACTTGC
*
25466 AGTATCGATACTCTACTTGT
1 AGTATCGATACTCTACTTGC
25486 AGTATCGATAC
1 AGTATCGATAC
25497 CCTAGGGTCA
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 108 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (20 bp):
AGTATCGATACTCTACTTGC
Found at i:26202 original size:13 final size:13
Alignment explanation
Indices: 26184--26216 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26174 TGGAGCTTGG
26184 AGAGAAAAGAGAA
1 AGAGAAAAGAGAA
*
26197 AGAGAAATGAGAA
1 AGAGAAAAGAGAA
26210 AGA-AAAA
1 AGAGAAAA
26217 AAAATAAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 3 0.17
13 15 0.83
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (13 bp):
AGAGAAAAGAGAA
Found at i:28858 original size:47 final size:48
Alignment explanation
Indices: 28795--28908 Score: 126
Period size: 48 Copynumber: 2.4 Consensus size: 48
28785 GTAACCATGC
*
28795 AAATAACCTTATGAGCTTACGG-A-TT-AATGGCAAGTATATTGAAAAAA
1 AAATAAGCTTATGAGCTTACGGAATTTAAATGGCAAGTATATTG--AAAA
* * * * **
28842 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTAA
1 AAATAAGCTTATGAGCTTACGGAATTTAAATGGCAAGTATATTGAAAA
28890 AAATAAGCTTATGAGCTTA
1 AAATAAGCTTATGAGCTTA
28909 TGGGATAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
47 19 0.34
48 21 0.38
49 2 0.04
50 14 0.25
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (48 bp):
AAATAAGCTTATGAGCTTACGGAATTTAAATGGCAAGTATATTGAAAA
Found at i:43064 original size:49 final size:50
Alignment explanation
Indices: 43010--43110 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
43000 CTAATATTAA
43010 ACCTAAAAG-TTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
*
43059 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGCAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
43109 AC
1 AC
43111 AAGACTAAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 9 0.18
50 41 0.82
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.45
Consensus pattern (50 bp):
ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
Found at i:44846 original size:19 final size:19
Alignment explanation
Indices: 44814--44856 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
44804 TGTTGTTGTA
44814 TTTTTACTTTTTTAT-TAT
1 TTTTTACTTTTTTATATAT
44832 TATTTTA-TTTATTTATATAT
1 T-TTTTACTTT-TTTATATAT
44852 TTTTT
1 TTTTT
44857 CTTCTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.18
19 14 0.64
20 4 0.18
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTACTTTTTTATATAT
Found at i:44965 original size:30 final size:30
Alignment explanation
Indices: 44926--44985 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
44916 TATCTTATCT
* * *
44926 TTTATTTAATTTGTTT-TTTCGTTATTTTAA
1 TTTAATTAATTTATTTATTTC-TTATCTTAA
44956 TTTAATTAATTTATTTATTTCTTATCTTAA
1 TTTAATTAATTTATTTATTTCTTATCTTAA
44986 CCTTGATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (30 bp):
TTTAATTAATTTATTTATTTCTTATCTTAA
Found at i:45562 original size:32 final size:32
Alignment explanation
Indices: 45515--45627 Score: 138
Period size: 32 Copynumber: 3.5 Consensus size: 32
45505 TGAGGGCATC
*
45515 TTTGAAGATTCAACATCAAATGTTGGAGCATTT
1 TTTG-AGATTCAACATCAAATGTTGGGGCATTT
* *
45548 TTTTAGATTTAACATCAAATGTTGGGGCATTT
1 TTTGAGATTCAACATCAAATGTTGGGGCATTT
* * *
45580 TTTGAGATTCAACATCGAATATTGGGGCA-TA
1 TTTGAGATTCAACATCAAATGTTGGGGCATTT
*
45611 TTTGGGAATTCAACATC
1 TTTGAG-ATTCAACATC
45628 CTGATGCAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
31 6 0.09
32 61 0.87
33 3 0.04
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (32 bp):
TTTGAGATTCAACATCAAATGTTGGGGCATTT
Found at i:46315 original size:94 final size:95
Alignment explanation
Indices: 46205--46467 Score: 330
Period size: 106 Copynumber: 2.7 Consensus size: 95
46195 ATATCGTGCC
* *
46205 ACTCGAGACAACACAAGTTCAACTCCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTC-C
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCGC
46269 CAATTTCAACTTCACAGCGAAGGATATTGG
66 CAATTTCAACTTCACAGCGAAGGATATTGG
* *
46299 ACTCGAGACAACACAAGTTCAACTTCACAACAAAGGGACGGCTGATTGTCAACAAACAATTTCCT
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC--A-AA----C-
46364 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
58 AATTTC---GCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * ** *
46405 ACTCGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGTGGCTGGCTGTCAACAAACAATTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTC
46468 TTAGTTCCAG
Statistics
Matches: 145, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
94 49 0.34
96 1 0.01
97 2 0.01
98 6 0.04
99 1 0.01
101 1 0.01
102 6 0.04
103 2 0.01
104 1 0.01
106 76 0.52
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (95 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCGC
CAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:46455 original size:106 final size:106
Alignment explanation
Indices: 46268--46515 Score: 361
Period size: 106 Copynumber: 2.3 Consensus size: 106
46258 AAACAATTTC
*
46268 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACAAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
* * *
46333 GGGACGGCTGATTGTCAACAAACAATTTCCTAATTTCGGAG
66 GGGACGGCTGACTGTCAACAAACAATTTCCTAATTCCAGAG
* * *
46374 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAGCACAAGCTCAACTTCACAGCGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
** * * *
46439 GGGGTGGCTGGCTGTCAACAAACAATTTCTTAGTTCCAGAG
66 GGGACGGCTGACTGTCAACAAACAATTTCCTAATTCCAGAG
* * *
46480 CCAATTTTAACTTCACGGCGGAGGATATTGGACTCG
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
46516 GAACAATACA
Statistics
Matches: 127, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 127 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (106 bp):
CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
GGGACGGCTGACTGTCAACAAACAATTTCCTAATTCCAGAG
Found at i:46929 original size:36 final size:37
Alignment explanation
Indices: 46882--47071 Score: 107
Period size: 37 Copynumber: 5.4 Consensus size: 37
46872 ATTGAAAACA
* * *
46882 TTTCCCTTGAAA-TAAATTTTATCTCGCTTG-GGGTAG
1 TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGAG-AG
*
46918 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGAGAG
1 TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGAGAG
* * * * *
46955 TTTCTCTTGAAACATAA----A----CATTGA-AAACA
1 TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGAGA-G
* ** * * *
46984 TTTCCTTTGAAA-TTAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGAGAG
* *
47020 TTTCCCTTGAAACAAAAATTTTGTCTCCCTTGAGATAG
1 TTTCCCTTGAAAC-AAAATTTTATCTCCCTTGAGAGAG
*
47058 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
47072 TAAACCTTGA
Statistics
Matches: 117, Mismatches: 23, Indels: 27
0.70 0.14 0.16
Matches are distributed among these distances:
28 5 0.04
29 15 0.13
36 27 0.23
37 35 0.30
38 35 0.30
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGAGAG
Found at i:46969 original size:87 final size:88
Alignment explanation
Indices: 46773--46945 Score: 278
Period size: 87 Copynumber: 2.0 Consensus size: 88
46763 CAGTTTCTCT
* *
46773 TGAAACATAAACATTGAAAACA-TTCTCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCCC
1 TGAAACATAAATATTGAAAACATTTCTCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCC
*
46837 TTGAAACGAAATTTTGTCTCCCC
66 TTGAAACAAAATTTTGTCTCCCC
* * *
46860 TGAAACATAAATATTGAAAACATTTC-CCTTGAAATAAATTTTATCTCGCTTGGGGTAGTTTCCC
1 TGAAACATAAATATTGAAAACATTTCTCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCC
46924 TTGAAACAAAATTTTGTCTCCC
66 TTGAAACAAAATTTTGTCTCCC
46946 TTGAGAGAGT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
87 76 0.96
88 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (88 bp):
TGAAACATAAATATTGAAAACATTTCTCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCC
TTGAAACAAAATTTTGTCTCCCC
Found at i:46978 original size:102 final size:103
Alignment explanation
Indices: 46860--47098 Score: 381
Period size: 102 Copynumber: 2.3 Consensus size: 103
46850 TTGTCTCCCC
* * *
46860 TGAAACATAAATATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
46925 TGAAAC-AAAATTTTGTCTCCCTTGAGAGAGTTTCTCT
66 TGAAACAAAAATTTTGTCTCCCTTGAGAGAGTTTCTCT
* * * *
46962 TGAAACATAAACATTGAAAACATTTCCTTTGAAATTAATTTTGTCTCTCTTGAGATAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
*
47027 TGAAACAAAAATTTTGTCTCCCTTGAGATAGTTTCTCT
66 TGAAACAAAAATTTTGTCTCCCTTGAGAGAGTTTCTCT
* *
47065 TGAAACATAAACCTTGAAAACGTTTCCCTTGAAA
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAA
47099 CATAAAATAT
Statistics
Matches: 125, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
102 64 0.51
103 61 0.49
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (103 bp):
TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
TGAAACAAAAATTTTGTCTCCCTTGAGAGAGTTTCTCT
Found at i:47046 original size:38 final size:38
Alignment explanation
Indices: 46998--47071 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
46988 CTTTGAAATT
*
46998 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAA
1 AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAA
*
47036 AATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAACA
1 AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACA
47072 TAAACCTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.41
Consensus pattern (38 bp):
AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAA
Found at i:47192 original size:15 final size:15
Alignment explanation
Indices: 47172--47206 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
47162 TCTTGTCTCT
*
47172 CTTGAGATATTTTCC
1 CTTGAGATAATTTCC
47187 CTTGAGATAATTTCC
1 CTTGAGATAATTTCC
47202 CTTGA
1 CTTGA
47207 AACAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (15 bp):
CTTGAGATAATTTCC
Found at i:47237 original size:51 final size:52
Alignment explanation
Indices: 47136--47247 Score: 172
Period size: 51 Copynumber: 2.2 Consensus size: 52
47126 AAAACGAGTT
* *
47136 TTGAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATATTTTCCC
1 TTGAGACAATTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCC
* *
47188 TTGAGATAATTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGATAGTTTCCC
1 TTGAGACAATTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCC
*
47239 TTGAAACAA
1 TTGAGACAA
47248 AATCTTTGAA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
51 34 0.63
52 20 0.37
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (52 bp):
TTGAGACAATTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCC
Found at i:47329 original size:37 final size:35
Alignment explanation
Indices: 47271--47386 Score: 142
Period size: 36 Copynumber: 3.2 Consensus size: 35
47261 CTTTTCCTTG
* *
47271 AAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTTTT
* *
47306 AGAACTAAGTTTTGTCTCTCTTGAGACAATTTCTTTTT
1 A-AAC-AAATTTTGTCTCTCTTGAGACAGTTTC-TTTT
* *
47344 AAACAAATTTTGTCCCTCTTGAGACAGTTTCTCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCT-TTT
47380 AAACAAA
1 AAACAAA
47387 AAAAACCTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
35 2 0.03
36 36 0.52
37 26 0.38
38 5 0.07
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (35 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTTTT
Found at i:47595 original size:84 final size:85
Alignment explanation
Indices: 47465--47622 Score: 255
Period size: 84 Copynumber: 1.9 Consensus size: 85
47455 CACCAAACCC
* * * *
47465 TCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGT
1 TCGAGTTCGAGTACACTCAGCTTCGAAGACACATCATTTACAACATAACTCAAGGCAAGAAGGGT
47530 TATCTGTCACCAAAAGACCT
66 TATCTGTCACCAAAAGACCT
* *
47550 TCGAGTTCGAGTATACTCAGC-TCTAAGACACATCATTTACAACATAACTCAAGGCAAGAAGGGT
1 TCGAGTTCGAGTACACTCAGCTTCGAAGACACATCATTTACAACATAACTCAAGGCAAGAAGGGT
47614 TATCTGTCA
66 TATCTGTCA
47623 ATAAAATTGT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
84 48 0.72
85 19 0.28
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (85 bp):
TCGAGTTCGAGTACACTCAGCTTCGAAGACACATCATTTACAACATAACTCAAGGCAAGAAGGGT
TATCTGTCACCAAAAGACCT
Found at i:48634 original size:27 final size:26
Alignment explanation
Indices: 48548--48632 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 26
48538 TTTCATGTAA
* **
48548 TATTTTTTTACATT-TTATGCATT-T
1 TATTTTTTTACATTAGTATATATTAT
* * *
48572 TCTTTTTTTACTTTAGTATATATTTT
1 TATTTTTTTACATTAGTATATATTAT
*
48598 TATTTTTTTAGATTA-TATATATATAT
1 TATTTTTTTACATTAGTATATAT-TAT
48624 TATTTTTTT
1 TATTTTTTT
48633 TATTATCAGT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
24 12 0.24
25 13 0.27
26 24 0.49
ACGTcount: A:0.24, C:0.05, G:0.04, T:0.68
Consensus pattern (26 bp):
TATTTTTTTACATTAGTATATATTAT
Found at i:48637 original size:25 final size:27
Alignment explanation
Indices: 48574--48761 Score: 85
Period size: 30 Copynumber: 6.8 Consensus size: 27
48564 ATGCATTTTC
*
48574 TTTTTTTACTT-TAGTATATATTTTTAT
1 TTTTTTTA-TTATAGTATATATTATTAT
*
48601 TTTTTTAGATTATA-TATATA-TATTAT
1 TTTTTT-TATTATAGTATATATTATTAT
*
48627 TTTTTTTATTATCAGT-TTTATTAATTTAT
1 TTTTTTTATTAT-AGTATATATT-A-TTAT
* *
48656 ATATATATATATATATA-TATATATATATTACT
1 -T-T-TTTTTAT-TATAGTATATAT-TATTA-T
48688 ATTTTTATTATTATA-TATATATATATTAT
1 -TTTTT-TTATTATAGTATATAT-TATTAT
*
48717 TTTTACTTT-TT-TA-T-TATTTTATTAT
1 TTTT--TTTATTATAGTATATATTATTAT
*
48742 TTGTTTTATT-TA-TATATATT
1 TTTTTTTATTATAGTATATATT
48762 TTTCTTCTTT
Statistics
Matches: 130, Mismatches: 12, Indels: 40
0.71 0.07 0.22
Matches are distributed among these distances:
23 3 0.02
24 5 0.04
25 19 0.15
26 19 0.15
27 19 0.15
28 10 0.08
29 7 0.05
30 21 0.16
31 9 0.07
32 14 0.11
33 4 0.03
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTTTTTATTATAGTATATATTATTAT
Found at i:48660 original size:2 final size:2
Alignment explanation
Indices: 48653--48713 Score: 74
Period size: 2 Copynumber: 31.5 Consensus size: 2
48643 TTTATTAATT
* *
48653 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA CTA TT TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
48695 T- TA T- TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
48714 TATTTTTACT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
1 3 0.06
2 48 0.91
3 2 0.04
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:48731 original size:32 final size:34
Alignment explanation
Indices: 48665--48733 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
48655 TATATATATA
*
48665 TATATATATATATATATATTACTATTTTTATTAT
1 TATATATATATATATATATTACTACTTTTATTAT
**
48699 TATATATATATATAT-TATTTTTACTTTT-TTAT
1 TATATATATATATATATATTACTACTTTTATTAT
48731 TAT
1 TAT
48734 TTTATTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 7 0.22
33 10 0.31
34 15 0.47
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (34 bp):
TATATATATATATATATATTACTACTTTTATTAT
Found at i:48736 original size:8 final size:8
Alignment explanation
Indices: 48690--48763 Score: 51
Period size: 8 Copynumber: 8.5 Consensus size: 8
48680 ATATTACTAT
48690 TTTTATTA
1 TTTTATTA
*
48698 TTATATATA
1 TTTTAT-TA
*
48707 TATATATTA
1 T-TTTATTA
48716 TTTTTACTT-
1 -TTTTA-TTA
48725 TTTTATTA
1 TTTTATTA
48733 TTTTATTA
1 TTTTATTA
*
48741 TTTGTTTTA
1 TTT-TATTA
48750 TTTATATATA
1 TTT-TAT-TA
48760 TTTT
1 TTTT
48764 TCTTCTTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
7 2 0.04
8 21 0.39
9 18 0.33
10 13 0.24
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.70
Consensus pattern (8 bp):
TTTTATTA
Found at i:48759 original size:47 final size:47
Alignment explanation
Indices: 48705--48824 Score: 124
Period size: 47 Copynumber: 2.5 Consensus size: 47
48695 TTATTATATA
* *
48705 TATATATATTATTTTTACTTTTTTATTATTTTAT-TATTTGTTTTATT
1 TATATATATTATTTTT-CTTTTTTATTATTTTATATATTTATTTTACT
*
48752 TATATATATT-TTTCTTCTTTTTCT-TTATTTTTTATATTTATTTTACT
1 TATATATATTATTT-TTCTTTTT-TATTATTTTATATATTTATTTTACT
48799 TACTAT-T-TTATTTTTGCTTTCTTTAT
1 TA-TATATATTATTTTT-CTTT-TTTAT
48825 CTTATCTTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
46 21 0.34
47 35 0.56
48 6 0.10
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.72
Consensus pattern (47 bp):
TATATATATTATTTTTCTTTTTTATTATTTTATATATTTATTTTACT
Found at i:48764 original size:28 final size:28
Alignment explanation
Indices: 48574--48790 Score: 93
Period size: 28 Copynumber: 7.8 Consensus size: 28
48564 ATGCATTTTC
48574 TTTTT-TTACTTTAGTATATATTTTTATT-
1 TTTTTATTA-TTTA-TATATATTTTTATTA
*
48602 TTTTTAGATTATATATATATATTATTT-TT-
1 TTTTT--ATTATTTATATATATT-TTTATTA
* *
48631 TTTATTATCAGTTT-TAT-TA-ATTTATATA
1 TTT-TTATTA-TTTATATATATTTTTAT-TA
* * * * *
48659 TATATATATATATATATATATATATTACTA
1 TTTTTAT-TATTTATATATAT-TTTTATTA
* *
48689 TTTTTATTA-TTATATATATATATATTA
1 TTTTTATTATTTATATATATTTTTATTA
48716 TTTTTACTT-TTT-TAT-TA-TTTTATTA
1 TTTTTA-TTATTTATATATATTTTTATTA
* *
48741 TTTGTT-TTATTTATATATATTTTTCTTC
1 TTT-TTATTATTTATATATATTTTTATTA
* *
48769 TTTTTCTTTATTT-TTTATATTT
1 TTTTT-ATTATTTATATATATTT
48791 ATTTTACTTA
Statistics
Matches: 143, Mismatches: 23, Indels: 46
0.67 0.11 0.22
Matches are distributed among these distances:
24 2 0.01
25 15 0.10
26 8 0.06
27 25 0.17
28 47 0.33
29 25 0.17
30 15 0.10
31 6 0.04
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (28 bp):
TTTTTATTATTTATATATATTTTTATTA
Found at i:48866 original size:26 final size:27
Alignment explanation
Indices: 48831--48882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
48821 TTATCTTATC
48831 TTTTATTTAATTTATTT-TTT-TTTCA
1 TTTTATTTAATTTATTTATTTATTTCA
48856 TTTTAATTTAATTTATTTATTTATTTC
1 TTTT-ATTTAATTTATTTATTTATTTC
48883 TTATCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.17
26 13 0.54
27 3 0.12
28 4 0.17
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (27 bp):
TTTTATTTAATTTATTTATTTATTTCA
Found at i:51921 original size:49 final size:50
Alignment explanation
Indices: 51867--51967 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
51857 CTAATATTAA
51867 ACCTAAAAG-TTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
*
51916 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGCAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
51966 AC
1 AC
51968 AAGACTAAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 9 0.18
50 41 0.82
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.45
Consensus pattern (50 bp):
ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
Found at i:53712 original size:13 final size:12
Alignment explanation
Indices: 53678--53774 Score: 67
Period size: 12 Copynumber: 8.1 Consensus size: 12
53668 TTGTTGTATT
*
53678 TTTACTTTTTTA
1 TTTATTTTTTTA
*
53690 -TTATTATTTTA
1 TTTATTTTTTTA
53701 TTTATTTGTTTTA
1 TTTATTT-TTTTA
*
53714 TTTATATATTTT-
1 TTTAT-TTTTTTA
* *
53726 TTTCTTCTTTTTC
1 TTTATT-TTTTTA
53739 TTTATTTTTTTA
1 TTTATTTTTTTA
53751 --TATTTATTTTA
1 TTTATTT-TTTTA
* *
53762 CTTATTATTTTA
1 TTTATTTTTTTA
53774 T
1 T
53775 CTTTGCTTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
10 5 0.07
11 15 0.22
12 23 0.34
13 23 0.34
14 1 0.01
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.75
Consensus pattern (12 bp):
TTTATTTTTTTA
Found at i:53736 original size:24 final size:21
Alignment explanation
Indices: 53676--53749 Score: 53
Period size: 21 Copynumber: 3.3 Consensus size: 21
53666 TGTTGTTGTA
*
53676 TTTTTACTTTTTTATTATTAT
1 TTTTTTCTTTTTTATTATTAT
*
53697 TTTATTTATTTGTTTTATTTATATAT
1 TTT-TTT-CTT-TTTTA-TTAT-TAT
53723 TTTTTTCTTCTTTT-TCT-TTAT
1 TTTTTTCTT-TTTTAT-TATTAT
53744 TTTTTT
1 TTTTTT
53750 ATATTTATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
21 12 0.28
22 4 0.09
23 3 0.07
24 11 0.26
25 7 0.16
26 6 0.14
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.78
Consensus pattern (21 bp):
TTTTTTCTTTTTTATTATTAT
Found at i:53760 original size:23 final size:23
Alignment explanation
Indices: 53690--53789 Score: 60
Period size: 23 Copynumber: 4.2 Consensus size: 23
53680 TACTTTTTTA
* *
53690 TTATTATTTTATTTATTTGTTTTAT
1 TTATTATTTTA--TATTTATTTTCT
* *
53715 TTATATATTTT-TTTCTTCTTTTTCT
1 TTAT-TATTTTATAT-TT-ATTTTCT
*
53740 TTATTTTTTTATATTTATTTTAC-
1 TTATTATTTTATATTTATTTT-CT
* **
53763 TTATTATTTTATCTTTGCTTTCT
1 TTATTATTTTATATTTATTTTCT
53786 TTAT
1 TTAT
53790 CTTATCTTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
22 1 0.02
23 27 0.46
24 10 0.17
25 15 0.25
26 6 0.10
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (23 bp):
TTATTATTTTATATTTATTTTCT
Found at i:53778 original size:37 final size:37
Alignment explanation
Indices: 53685--53778 Score: 90
Period size: 37 Copynumber: 2.6 Consensus size: 37
53675 ATTTTTACTT
53685 TTTTATTATTATTTTA--TTTATTTGTTTTATTTATATA
1 TTTTATTATTATTTTATCTTTATTTGTTTTA-TT-TATA
* * *
53722 TTTTTTTCTTCTTTT-TCTTTATTT-TTTTATATT-TA
1 TTTTATTATTATTTTATCTTTATTTGTTTTAT-TTATA
53757 TTTTACTTATTATTTTATCTTT
1 TTTTA-TTATTATTTTATCTTT
53779 GCTTTCTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
35 6 0.13
36 10 0.22
37 23 0.50
38 7 0.15
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (37 bp):
TTTTATTATTATTTTATCTTTATTTGTTTTATTTATA
Found at i:54432 original size:32 final size:32
Alignment explanation
Indices: 54385--54464 Score: 117
Period size: 32 Copynumber: 2.5 Consensus size: 32
54375 TGAGGGCATC
54385 TTTGAAGATTCAACATCAAATGTTGGAGCATTTT
1 TTTG-AGATTCAACATCAAATGTTGGAGC-TTTT
* *
54419 TTT-AGATTTAACATCAAATGTTGGGGCTTTT
1 TTTGAGATTCAACATCAAATGTTGGAGCTTTT
54450 TTTGAGATTCAACAT
1 TTTGAGATTCAACAT
54465 TGAATATTAG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
31 7 0.17
32 32 0.76
34 3 0.07
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (32 bp):
TTTGAGATTCAACATCAAATGTTGGAGCTTTT
Found at i:55175 original size:94 final size:95
Alignment explanation
Indices: 55065--55327 Score: 339
Period size: 106 Copynumber: 2.7 Consensus size: 95
55055 ATATCGTGCC
*
55065 ACTCGAGACAACACAAGTTCAACTCCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTC-C
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCGC
55129 CAATTTCAACTTCACAGCGAAGGATATTGG
66 CAATTTCAACTTCACAGCGAAGGATATTGG
* * *
55159 ACTCGAGACAACACAAGTTCAACTTCACAACAAAGGGACGGCTGATTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAAC--A-AA-----C
55224 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
58 AATTTC---GCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
55265 ACTCGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGACTGGCTGTCAACAAACAATTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTC
55328 TTAGTTCCAG
Statistics
Matches: 145, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
94 49 0.34
96 1 0.01
97 2 0.01
98 7 0.05
102 7 0.05
103 2 0.01
104 1 0.01
106 76 0.52
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (95 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCGC
CAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:55315 original size:106 final size:106
Alignment explanation
Indices: 55128--55375 Score: 352
Period size: 106 Copynumber: 2.3 Consensus size: 106
55118 AAACAATTTC
*
55128 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACAAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
* * * *
55193 GGGACGGCTGATTGTCAACAAACAATTTCCCAATTTCGGAG
66 GGGACGACTGACTGTCAACAAACAATTTCCCAATTCCAGAG
* * *
55234 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAGCACAAGCTCAACTTCACAGCGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
* * ** *
55299 GGGGCGACTGGCTGTCAACAAACAATTTCTTAGTTCCAGAG
66 GGGACGACTGACTGTCAACAAACAATTTCCCAATTCCAGAG
* * *
55340 CCAATTTTAACTTCACGGCGGAGGATATTGGACTCG
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
55376 GAACAATACA
Statistics
Matches: 126, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 126 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (106 bp):
CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
GGGACGACTGACTGTCAACAAACAATTTCCCAATTCCAGAG
Found at i:55817 original size:37 final size:37
Alignment explanation
Indices: 55776--55930 Score: 107
Period size: 37 Copynumber: 4.4 Consensus size: 37
55766 CGCTTGGGGT
55776 AGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGAC
1 AGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGAC
* * *
55813 AGTTTCTCTTGAAACATAAA---------CATTGAAAAC
1 AGTTTCCCTTGAAACA-AAATTTTGTCTCCCTTG-AGAC
* * ** * *
55843 A-TTTTCTTTGAAA-TTAATTTTGTCTCTCTTGAGAT
1 AGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGAC
* *
55878 TGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGAT
1 AGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGAC
*
55915 AGTTTCTCTTGAAACA
1 AGTTTCCCTTGAAACA
55931 TAAACCTTGA
Statistics
Matches: 85, Mismatches: 20, Indels: 26
0.65 0.15 0.20
Matches are distributed among these distances:
27 2 0.02
29 13 0.15
30 4 0.05
35 2 0.02
36 13 0.15
37 48 0.56
38 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (37 bp):
AGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGAC
Found at i:55829 original size:87 final size:87
Alignment explanation
Indices: 55633--55805 Score: 292
Period size: 87 Copynumber: 2.0 Consensus size: 87
55623 CAGTTTCTCT
*
55633 TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTTTCTCGATTGAGATAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCCCT
*
55698 TGAAACGAAATTTTGTCTCCCC
66 TGAAACAAAATTTTGTCTCCCC
* * * *
55720 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCCCT
55785 TGAAACAAAATTTTGTCTCCC
66 TGAAACAAAATTTTGTCTCCC
55806 TTGAGACAGT
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (87 bp):
TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCCCT
TGAAACAAAATTTTGTCTCCCC
Found at i:55830 original size:102 final size:102
Alignment explanation
Indices: 55720--55957 Score: 377
Period size: 102 Copynumber: 2.3 Consensus size: 102
55710 TTGTCTCCCC
* *
55720 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCT
55785 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
66 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
* * * * * *
55822 TGAAACATAAACATTGAAAACATTTTCTTTGAAATTAATTTTGTCTCTCTTGAGATTGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCT
*
55887 TGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTCT
66 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
* *
55924 TGAAACATAAACCTTGAAAACGTTTCCCTTGAAA
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAA
55958 CATTAAATAT
Statistics
Matches: 123, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 123 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (102 bp):
TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCT
TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
Found at i:56052 original size:15 final size:15
Alignment explanation
Indices: 56032--56065 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
56022 CTTGTCTCTC
*
56032 TTGAGATAGTTTCCA
1 TTGAGACAGTTTCCA
*
56047 TTGAGACAGTTTCCC
1 TTGAGACAGTTTCCA
56062 TTGA
1 TTGA
56066 AACAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (15 bp):
TTGAGACAGTTTCCA
Found at i:56058 original size:52 final size:51
Alignment explanation
Indices: 55997--56101 Score: 174
Period size: 51 Copynumber: 2.0 Consensus size: 51
55987 AACGAGTTTG
*
55997 GAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCATT
1 GAGACAGTTTCCCTTGAAAC-AAATCTTGTCACTCTTGAGATAGTTTCCATT
* *
56049 GAGACAGTTTCCCTTGAAACAAATTTTGTCACTCTTGAGATAGTTTCCCTT
1 GAGACAGTTTCCCTTGAAACAAATCTTGTCACTCTTGAGATAGTTTCCATT
56100 GA
1 GA
56102 AACAAAATCT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
51 30 0.60
52 20 0.40
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (51 bp):
GAGACAGTTTCCCTTGAAACAAATCTTGTCACTCTTGAGATAGTTTCCATT
Found at i:56188 original size:37 final size:35
Alignment explanation
Indices: 56130--56234 Score: 129
Period size: 36 Copynumber: 2.9 Consensus size: 35
56120 CTTTTCCTTG
* *
56130 AAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTTTT
* *
56165 AGAACTAAGTTTTGTCTCTCTTGAGACAATTTCTTTTT
1 A-AAC-AAATTTTGTCTCTCTTGAGACAGTTTC-TTTT
* *
56203 AAACAAATTTTGTCCCTCTTGAAACAGTTTCT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCT
56235 CTTGAAAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
35 2 0.03
36 26 0.44
37 26 0.44
38 5 0.08
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (35 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTTTT
Found at i:57490 original size:26 final size:26
Alignment explanation
Indices: 57428--57491 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
57418 ATGCATTTTC
*
57428 TTTTTTTACTT-TAGTATATATTTTTA
1 TTTTTTTA-TTATAGTATATATTATTA
**
57454 TTTTTAGATTATA-TATATATATATTA
1 TTTTTTTATTATAGTATATAT-TATTA
57480 TTTTTTTATTAT
1 TTTTTTTATTAT
57492 CAGTTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
25 9 0.29
26 22 0.71
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTTTTTATTATAGTATATATTATTA
Found at i:57510 original size:39 final size:38
Alignment explanation
Indices: 57448--57577 Score: 126
Period size: 39 Copynumber: 3.4 Consensus size: 38
57438 TTAGTATATA
*
57448 TTTTTATTT-TTAGAT-TATATATATATATATTATTTT
1 TTTTTATTTATTATATATATATATATATATATTATTTT
* *
57484 TTTATTATCAGTT-TTAT-TA-ATTTATATATATATTACTATT
1 TTT-TTAT---TTATTATATATATATATATATATATTA-TTTT
57524 TTTTTATTTATTATATATATATATATATATATTATTTT
1 TTTTTATTTATTATATATATATATATATATATTATTTT
*
57562 TACTTTTTTTTATTAT
1 T--TTTTATTTATTAT
57578 TTTATTTATT
Statistics
Matches: 77, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
36 5 0.06
37 8 0.10
38 6 0.08
39 35 0.45
40 23 0.30
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (38 bp):
TTTTTATTTATTATATATATATATATATATATTATTTT
Found at i:57609 original size:47 final size:48
Alignment explanation
Indices: 57522--57681 Score: 136
Period size: 47 Copynumber: 3.4 Consensus size: 48
57512 TATATTACTA
* * * *
57522 TTTT-TTTATTTATTATATATA-TATATATATATATTATTTTTACTT-T
1 TTTTCTTTATTTTTTATATTTATTTTATTTATATATTATTTTT-CTTCT
*
57568 TTTT-TATTATTTTATT-TATTTGTTTTATTTATATA-TATTTTTCTTCT
1 TTTTCT-TTATTTT-TTATATTTATTTTATTTATATATTATTTTTCTTCT
* *
57615 TTTTCTTTATTTTTTATATTTATTTTACTTACTATTTTATTTTTGCTTTCT
1 TTTTCTTTATTTTTTATATTTATTTTATTTA-TATATTATTTTT-C-TTCT
* *
57666 TTATC-TTATCTTTTAT
1 TTTTCTTTATTTTTTAT
57682 TTAATTTATT
Statistics
Matches: 94, Mismatches: 10, Indels: 16
0.78 0.08 0.13
Matches are distributed among these distances:
46 10 0.11
47 42 0.45
48 16 0.17
49 7 0.07
50 11 0.12
51 8 0.09
ACGTcount: A:0.21, C:0.06, G:0.01, T:0.71
Consensus pattern (48 bp):
TTTTCTTTATTTTTTATATTTATTTTATTTATATATTATTTTTCTTCT
Found at i:57618 original size:56 final size:54
Alignment explanation
Indices: 57520--57639 Score: 134
Period size: 56 Copynumber: 2.2 Consensus size: 54
57510 TATATATTAC
*
57520 TATTTT-TTTATTTATTATATATATATATATATATATTATTTTTACTTTTTTTTAT
1 TATTTTATTTATTTATTATATATATATATATATATATTATTTTT-CTTTATTTT-T
* * * * * * *
57575 TATTTTATTTATTTGTTTTATTTATATATATTTTTCTTCTTTTTCTTTATTTTT
1 TATTTTATTTATTTATTATATATATATATATATATATTATTTTTCTTTATTTTT
57629 TATATTTATTT
1 TAT-TTTATTT
57640 TACTTACTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
54 4 0.07
55 21 0.38
56 30 0.55
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.72
Consensus pattern (54 bp):
TATTTTATTTATTTATTATATATATATATATATATATTATTTTTCTTTATTTTT
Found at i:57711 original size:26 final size:27
Alignment explanation
Indices: 57676--57727 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
57666 TTATCTTATC
57676 TTTTATTTAATTTATTT-TTT-TTTCA
1 TTTTATTTAATTTATTTATTTATTTCA
57701 TTTTAATTTAATTTATTTATTTATTTC
1 TTTT-ATTTAATTTATTTATTTATTTC
57728 TTATCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.17
26 13 0.54
27 3 0.12
28 4 0.17
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (27 bp):
TTTTATTTAATTTATTTATTTATTTCA
Found at i:60771 original size:48 final size:49
Alignment explanation
Indices: 60712--60810 Score: 166
Period size: 49 Copynumber: 2.0 Consensus size: 49
60702 CTAATATTAA
60712 ACCTAAAAG-TTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAA-TGAAAATTAAAAATTT
*
60761 ACCT-AAAGTTTTTTAATATTTTATTTGAATAATGCAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATGAAAATTAAAAATTT
60809 AC
1 AC
60811 AAGACTAAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
48 21 0.44
49 27 0.56
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.44
Consensus pattern (49 bp):
ACCTAAAAGTTTTTTAATATTTTATTTGAATAATGAAAATTAAAAATTT
Found at i:62602 original size:13 final size:12
Alignment explanation
Indices: 62520--62672 Score: 68
Period size: 12 Copynumber: 12.3 Consensus size: 12
62510 GTTGTTGTAT
*
62520 TTTACTTTTTTA
1 TTTATTTTTTTA
*
62532 -TTATTATTTTA
1 TTTATTTTTTTA
62543 TTTATTTGTTTTA
1 TTTATTT-TTTTA
*
62556 TTTATATATTTT-
1 TTTAT-TTTTTTA
* *
62568 TTTCTTCTTTTTC
1 TTTATT-TTTTTA
62581 TTTATTTTTTTA
1 TTTATTTTTTTA
62593 --TATTTATTTTA
1 TTTATTT-TTTTA
* *
62604 CTTATTATTTTA
1 TTTATTTTTTTA
62616 TCTT-TGCTTTCTTTA
1 T-TTAT--TTT-TTTA
*
62631 TCTTA-TCTTTTA
1 T-TTATTTTTTTA
*
62643 TTTAATTTGTTT-
1 TTT-ATTTTTTTA
62655 TTTATTTATTTTAA
1 TTTATTT-TTTT-A
62669 TTTA
1 TTTA
62673 ATTAATTAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 34
0.69 0.10 0.22
Matches are distributed among these distances:
10 5 0.05
11 21 0.19
12 36 0.33
13 31 0.29
14 7 0.06
15 8 0.07
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (12 bp):
TTTATTTTTTTA
Found at i:62602 original size:23 final size:23
Alignment explanation
Indices: 62532--62631 Score: 60
Period size: 23 Copynumber: 4.2 Consensus size: 23
62522 TACTTTTTTA
* *
62532 TTATTATTTTATTTATTTGTTTTAT
1 TTATTATTTTA--TATTTATTTTCT
* *
62557 TTATATATTTT-TTTCTTCTTTTTCT
1 TTAT-TATTTTATAT-TT-ATTTTCT
*
62582 TTATTTTTTTATATTTATTTTAC-
1 TTATTATTTTATATTTATTTT-CT
* **
62605 TTATTATTTTATCTTTGCTTTCT
1 TTATTATTTTATATTTATTTTCT
62628 TTAT
1 TTAT
62632 CTTATCTTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
22 1 0.02
23 27 0.46
24 10 0.17
25 15 0.25
26 6 0.10
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (23 bp):
TTATTATTTTATATTTATTTTCT
Found at i:62620 original size:37 final size:37
Alignment explanation
Indices: 62527--62620 Score: 90
Period size: 37 Copynumber: 2.6 Consensus size: 37
62517 TATTTTACTT
62527 TTTTATTATTATTTTA--TTTATTTGTTTTATTTATATA
1 TTTTATTATTATTTTATCTTTATTTGTTTTA-TT-TATA
* * *
62564 TTTTTTTCTTCTTTT-TCTTTATTT-TTTTATATT-TA
1 TTTTATTATTATTTTATCTTTATTTGTTTTAT-TTATA
62599 TTTTACTTATTATTTTATCTTT
1 TTTTA-TTATTATTTTATCTTT
62621 GCTTTCTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
35 6 0.13
36 10 0.22
37 23 0.50
38 7 0.15
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (37 bp):
TTTTATTATTATTTTATCTTTATTTGTTTTATTTATA
Found at i:63275 original size:32 final size:32
Alignment explanation
Indices: 63228--63307 Score: 117
Period size: 32 Copynumber: 2.5 Consensus size: 32
63218 TGAGGGCATC
63228 TTTGAAGATTCAACATCAAATGTTGGAGCATTTT
1 TTTG-AGATTCAACATCAAATGTTGGAGC-TTTT
* *
63262 TTT-AGATTTAACATCAAATGTTGGGGCTTTT
1 TTTGAGATTCAACATCAAATGTTGGAGCTTTT
63293 TTTGAGATTCAACAT
1 TTTGAGATTCAACAT
63308 TGAATATTAG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
31 7 0.17
32 32 0.76
34 3 0.07
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (32 bp):
TTTGAGATTCAACATCAAATGTTGGAGCTTTT
Found at i:64018 original size:94 final size:95
Alignment explanation
Indices: 63908--64169 Score: 346
Period size: 105 Copynumber: 2.7 Consensus size: 95
63898 ATATCGTGCC
*
63908 ACTCGAGACAACACAAGTTCAACTCCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTC-C
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCGC
63972 CAATTTCAACTTCACAGCGAAGGATATTGG
66 CAATTTCAACTTCACAGCGAAGGATATTGG
* * *
64002 ACTCGAGACAACACAAGTTCAACTTCACAACAAAGGGACGGCTGATTGTCAACAAACAATTTCCA
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAAC--A-AA----CA
64067 ATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
59 ATTTC---GCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
64107 ACTCGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGACTGGCTGTCAACAAACAATTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTC
64170 TTAGTTCCAG
Statistics
Matches: 145, Mismatches: 12, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
94 49 0.34
96 1 0.01
97 2 0.01
98 7 0.05
101 7 0.05
102 2 0.01
103 1 0.01
105 76 0.52
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (95 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCGC
CAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:64157 original size:105 final size:106
Alignment explanation
Indices: 63971--64217 Score: 352
Period size: 105 Copynumber: 2.3 Consensus size: 106
63961 AAACAATTTC
*
63971 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACAAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
* * * *
64036 GGGACGGCTGATTGTCAACAAACAATTTC-CAATTTCGGAG
66 GGGACGACTGACTGTCAACAAACAATTTCTCAATTCCAGAG
* * *
64076 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAGCACAAGCTCAACTTCACAGCGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
* * * *
64141 GGGGCGACTGGCTGTCAACAAACAATTTCTTAGTTCCAGAG
66 GGGACGACTGACTGTCAACAAACAATTTCTCAATTCCAGAG
* * *
64182 CCAATTTTAACTTCACGGCGGAGGATATTGGACTCG
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
64218 GAACAATACA
Statistics
Matches: 126, Mismatches: 15, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
105 86 0.68
106 40 0.32
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (106 bp):
CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGCTCAACTTCACAACAAA
GGGACGACTGACTGTCAACAAACAATTTCTCAATTCCAGAG
Found at i:64631 original size:36 final size:36
Alignment explanation
Indices: 64584--64669 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 36
64574 ATTGAAAACA
** * * **
64584 TTTCCCTTGAAATGAATTTTATCTCGCTTGGGGTAG
1 TTTCCCTTGAAACAAATTTTATCTCCCTTGAGACAG
*
64620 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTATCTCCCTTGAGACAG
*
64656 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
64670 TAAACATTGA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTATCTCCCTTGAGACAG
Found at i:64667 original size:87 final size:87
Alignment explanation
Indices: 64475--64646 Score: 292
Period size: 87 Copynumber: 2.0 Consensus size: 87
64465 CAGTTTCTCT
*
64475 TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTTTCTCGATTGAGATAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCCCT
64540 TGAAACGAAATTTTGTCTCCCC
66 TGAAACGAAATTTTGTCTCCCC
* * * *
64562 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCCCT
64627 TGAAAC-AAATTTTGTCTCCC
66 TGAAACGAAATTTTGTCTCCC
64647 TTGAGACAGT
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
86 14 0.17
87 66 0.82
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (87 bp):
TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCCCT
TGAAACGAAATTTTGTCTCCCC
Found at i:64670 original size:101 final size:102
Alignment explanation
Indices: 64562--64798 Score: 368
Period size: 101 Copynumber: 2.3 Consensus size: 102
64552 TTGTCTCCCC
* *
64562 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCT
64627 TGAAAC-AAATTTTGTCTCCCTTGAGACAGTTTCTCT
66 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
* * * * * *
64663 TGAAACATAAACATTGAAAACATTTTCTTTGAAATTAATTTTGTCTCTCTTGAGATTGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCT
*
64728 TGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTCT
66 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
* *
64765 TGAAACATAAACCTTGAAAACGTTTCCCTTGAAA
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAA
64799 CATTAAATAT
Statistics
Matches: 122, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
101 63 0.52
102 59 0.48
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.38
Consensus pattern (102 bp):
TGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCT
TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
Found at i:64741 original size:37 final size:37
Alignment explanation
Indices: 64699--64771 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
64689 CTTTGAAATT
* *
64699 AATTTTGTCTCTCTTGAGATTGTTTCCCTTGAAACAA
1 AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAA
*
64736 AATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAACA
1 AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACA
64772 TAAACCTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (37 bp):
AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAA
Found at i:64893 original size:15 final size:15
Alignment explanation
Indices: 64873--64906 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
64863 CTTGTCTCTC
*
64873 TTGAGATAGTTTCCA
1 TTGAGACAGTTTCCA
*
64888 TTGAGACAGTTTCCC
1 TTGAGACAGTTTCCA
64903 TTGA
1 TTGA
64907 AACAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (15 bp):
TTGAGACAGTTTCCA
Found at i:64899 original size:52 final size:51
Alignment explanation
Indices: 64838--64942 Score: 174
Period size: 51 Copynumber: 2.0 Consensus size: 51
64828 AACGAGTTTG
*
64838 GAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCATT
1 GAGACAGTTTCCCTTGAAAC-AAATCTTGTCACTCTTGAGATAGTTTCCATT
* *
64890 GAGACAGTTTCCCTTGAAACAAATTTTGTCACTCTTGAGATAGTTTCCCTT
1 GAGACAGTTTCCCTTGAAACAAATCTTGTCACTCTTGAGATAGTTTCCATT
64941 GA
1 GA
64943 AACAAAATCT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
51 30 0.60
52 20 0.40
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (51 bp):
GAGACAGTTTCCCTTGAAACAAATCTTGTCACTCTTGAGATAGTTTCCATT
Found at i:65029 original size:37 final size:35
Alignment explanation
Indices: 64971--65075 Score: 129
Period size: 36 Copynumber: 2.9 Consensus size: 35
64961 CTTTTCCTTG
* *
64971 AAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTTTT
* *
65006 AGAACTAAGTTTTGTCTCTCTTGAGACAATTTCTTTTT
1 A-AAC-AAATTTTGTCTCTCTTGAGACAGTTTC-TTTT
* *
65044 AAACAAATTTTGTCCCTCTTGAAACAGTTTCT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCT
65076 CTTGAAAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
35 2 0.03
36 26 0.44
37 26 0.44
38 5 0.08
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (35 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTTTT
Found at i:66310 original size:25 final size:27
Alignment explanation
Indices: 66262--66329 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 27
66252 CATTTTATGC
* *
66262 ATTTTCTTTTTTTACTTTAGTATATAT
1 ATTTTATTTTTTTACATTAGTATATAT
*
66289 -TTTTATTTTTTTAGATTA-TATATAT
1 ATTTTATTTTTTTACATTAGTATATAT
66314 ATATATTATTTTTTTA
1 AT-T-TTATTTTTTTA
66330 TTATCAGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 7 0.20
26 16 0.46
27 1 0.03
28 11 0.31
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (27 bp):
ATTTTATTTTTTTACATTAGTATATAT
Found at i:66359 original size:39 final size:33
Alignment explanation
Indices: 66282--66412 Score: 117
Period size: 33 Copynumber: 3.8 Consensus size: 33
66272 TTTACTTTAG
*
66282 TATATATT-TTTATTTTTTTA--GATTATATATA
1 TATATATTATTT-TTTTTTTATTTATTATATATA
*
66313 TATATATTATTTTTTTATTATCAGTTTTATTAATTTATA
1 TATATATTATTTTTTT-TT-T-A--TTTATT-ATATATA
* *
66352 TATATATTACTATTTTTTTATTTATTATATATA
1 TATATATTATTTTTTTTTTATTTATTATATATA
*
66385 TATATATTATTTTTACTTTT-TTTATTAT
1 TATATATTATTTTT-TTTTTATTTATTAT
66413 TTTATTTATT
Statistics
Matches: 82, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
31 12 0.15
32 5 0.06
33 27 0.33
34 11 0.13
36 1 0.01
37 1 0.01
38 5 0.06
39 20 0.24
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (33 bp):
TATATATTATTTTTTTTTTATTTATTATATATA
Found at i:66393 original size:49 final size:49
Alignment explanation
Indices: 66340--66441 Score: 109
Period size: 49 Copynumber: 2.1 Consensus size: 49
66330 TTATCAGTTT
66340 TATTAATTTATA-TATATATTACTATTTT-TTTATTTATTATATATATATA
1 TATT-ATTTATACT-TATATTACTATTTTATTTATTTATTATATATATATA
* * * * * * *
66389 TATTATTTTTACTTTTTTTATTATTTTATTTATTTGTTTTATTTATATA
1 TATTATTTATACTTATATTACTATTTTATTTATTTATTATATATATATA
66438 TATT
1 TATT
66442 TTTCTTCTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
48 17 0.39
49 27 0.61
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (49 bp):
TATTATTTATACTTATATTACTATTTTATTTATTTATTATATATATATA
Found at i:66465 original size:49 final size:49
Alignment explanation
Indices: 66364--66528 Score: 146
Period size: 49 Copynumber: 3.3 Consensus size: 49
66354 TATATTACTA
* *
66364 TTTT-TTTATTTATTATATATATATATATTATTT-TTAC-TTTT-TTTATT
1 TTTTATTTATTTATTTTATTTATATATATT-TTTCTT-CTTTTTCTTTATT
*
66411 ATTTTATTTATTTGTTTTATTTATATATATTTTTCTTCTTTTTCTTTATT
1 -TTTTATTTATTTATTTTATTTATATATATTTTTCTTCTTTTTCTTTATT
* * * *
66461 TTTTA--TATTTATTTTACTTACTATTTTATTTTTGCTTTCTTTATC-TTATC
1 TTTTATTTATTTATTTTATTTA-TA-TATATTTTT-C-TTCTTTTTCTTTATT
66511 TTTTATTTAATTTATTTT
1 TTTTATTT-ATTTATTTT
66529 TTTTTCATTT
Statistics
Matches: 98, Mismatches: 8, Indels: 17
0.80 0.07 0.14
Matches are distributed among these distances:
47 13 0.13
48 10 0.10
49 41 0.42
50 16 0.16
51 8 0.08
52 1 0.01
53 9 0.09
ACGTcount: A:0.21, C:0.06, G:0.01, T:0.72
Consensus pattern (49 bp):
TTTTATTTATTTATTTTATTTATATATATTTTTCTTCTTTTTCTTTATT
Found at i:69596 original size:49 final size:50
Alignment explanation
Indices: 69542--69642 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
69532 CTAATATTAA
69542 ACCTAAAAG-TTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
*
69591 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGCAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
69641 AC
1 AC
69643 AAGACTAAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 9 0.18
50 41 0.82
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.45
Consensus pattern (50 bp):
ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
Found at i:70416 original size:2 final size:2
Alignment explanation
Indices: 70411--70437 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
70401 TTTTTTAGAT
70411 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
70438 TATTTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70416 original size:24 final size:25
Alignment explanation
Indices: 70351--70418 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 25
70341 TTTCATGTAA
*
70351 TATTTTTTACATT--T-TATGCATTT
1 TATTTTTTACATTAGTATATAC-TTT
* *
70374 TCTTTTTTACTTTAGTATATACTTT
1 TATTTTTTACATTAGTATATACTTT
*
70399 TATTTTTTAGATTA-TATATA
1 TATTTTTTACATTAGTATATA
70419 TATATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
23 11 0.31
24 6 0.17
25 15 0.42
26 4 0.11
ACGTcount: A:0.25, C:0.07, G:0.04, T:0.63
Consensus pattern (25 bp):
TATTTTTTACATTAGTATATACTTT
Found at i:70487 original size:30 final size:32
Alignment explanation
Indices: 70451--70514 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
70441 TTATTATCAG
*
70451 TTTTA-TTCATT-TATATATATATTTACTATT
1 TTTTATTTCATTATATATATATATATACTATT
* *
70481 TTTTATTTTATTATATATATATATATATTATT
1 TTTTATTTCATTATATATATATATATACTATT
70513 TT
1 TT
70515 ACTTTTTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 5 0.17
31 5 0.17
32 19 0.66
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (32 bp):
TTTTATTTCATTATATATATATATATACTATT
Found at i:70535 original size:8 final size:8
Alignment explanation
Indices: 70451--70551 Score: 50
Period size: 8 Copynumber: 12.1 Consensus size: 8
70441 TTATTATCAG
70451 TTTTATTCA
1 TTTTATT-A
70460 TTTATATATA
1 TTT-TAT-TA
*
70470 TATTTACTA
1 T-TTTATTA
70479 TTTT-TTA
1 TTTTATTA
70486 TTTTATTA
1 TTTTATTA
*
70494 -TATATATA
1 TTTTAT-TA
*
70502 TATATATTA
1 T-TTTATTA
70511 TTTTACTT-
1 TTTTA-TTA
70519 TTTTATTA
1 TTTTATTA
70527 TTATT-TTA
1 TT-TTATTA
*
70535 -TTTATTTG
1 TTTTA-TTA
70543 TTTTATTA
1 TTTTATTA
70551 T
1 T
70552 ATATTTTTTC
Statistics
Matches: 73, Mismatches: 6, Indels: 27
0.69 0.06 0.25
Matches are distributed among these distances:
6 2 0.03
7 13 0.18
8 26 0.36
9 17 0.23
10 12 0.16
11 3 0.04
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (8 bp):
TTTTATTA
Found at i:70578 original size:45 final size:48
Alignment explanation
Indices: 70502--70644 Score: 127
Period size: 45 Copynumber: 2.9 Consensus size: 48
70492 TATATATATA
70502 TATATATTATTTTACTT-TTTTAT-TATTATTTTATTTATTTGTTTTA-T
1 TATATATTATTTTACTTCTTTT-TCT-TTATTTTATTTATTTGTTTTACT
*
70549 TATATATT-TTTT-CTTCTTTTTCTTTATTTT-TTATATTTATTTTACT
1 TATATATTATTTTACTTCTTTTTCTTTATTTTATT-TATTTGTTTTACT
* * * *
70595 TACTATTTTATCTTTGCTTTCTTTATCTTATCTTTTATTTAATTTGTTTT
1 TA-TATATTAT-TTTAC-TTCTTTTTCTT-TATTTTATTT-ATTTGTTTT
70645 TTCTTCATTT
Statistics
Matches: 79, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
44 2 0.03
45 21 0.27
46 12 0.15
47 13 0.16
48 1 0.01
49 3 0.04
50 1 0.01
51 10 0.13
52 6 0.08
53 10 0.13
ACGTcount: A:0.19, C:0.08, G:0.02, T:0.71
Consensus pattern (48 bp):
TATATATTATTTTACTTCTTTTTCTTTATTTTATTTATTTGTTTTACT
Found at i:71306 original size:31 final size:31
Alignment explanation
Indices: 71214--71325 Score: 127
Period size: 32 Copynumber: 3.5 Consensus size: 31
71204 TGAGGGCATC
71214 TTTGAAGATTCAACATCAAATGTTGGAGCATTT
1 TTTG-AGATTCAACATCAAATGTTGG-GCATTT
* *
71247 TTTTAGATTTAACATCAAATGTTGGGGCATTT
1 TTTGAGATTCAACATCAAATGTT-GGGCATTT
* * *
71279 TTTGAGATTCAACATCGAATATTGGGCA-TA
1 TTTGAGATTCAACATCAAATGTTGGGCATTT
*
71309 TTTGGGAATTCAACATC
1 TTTGAG-ATTCAACATC
71326 CTGATGCAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
30 6 0.09
31 15 0.22
32 43 0.62
33 5 0.07
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (31 bp):
TTTGAGATTCAACATCAAATGTTGGGCATTT
Found at i:72002 original size:93 final size:95
Alignment explanation
Indices: 71899--72160 Score: 330
Period size: 93 Copynumber: 2.7 Consensus size: 95
71889 ATATCGTGCC
* *
71899 ACTCGAGACAACACAAGTTCAACTCCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTC-C
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCGC
71963 CAATTTCAACTTCACAGCGAAGGATATT-G
66 CAATTTCAACTTCACAGCGAAGGATATTGG
* *
71992 ACTCGAGACAACACAAGTTCAACTTCACAACAAAGGGACGGCTGATTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC--A-AA-----C
72057 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
58 AATTTC---GCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
72098 ACTCGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGGCTGTCAACAAACAATTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTC
72161 TTAGTTCCAG
Statistics
Matches: 145, Mismatches: 11, Indels: 21
0.82 0.06 0.12
Matches are distributed among these distances:
93 49 0.34
95 1 0.01
96 2 0.01
98 7 0.05
101 7 0.05
103 2 0.01
104 1 0.01
105 29 0.20
106 47 0.32
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (95 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCGC
CAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:72148 original size:106 final size:105
Alignment explanation
Indices: 71962--72219 Score: 345
Period size: 106 Copynumber: 2.4 Consensus size: 105
71952 AAACAATTTC
*
71962 CCAATTTCAACTTCACAGCGAAGGATATTGACTCGAGACAACACAAGTTCAACTTCACAACAAAG
1 CCAATTTCAACTTCACAGCGAAGGATATTGACTCGAGACAACACAAGCTCAACTTCACAACAAAG
* * *
72027 GGACGGCTGATTGTCAACAAACAATTTCCCAATTTCGGAG
66 GGACGGCTGACTGTCAACAAACAATTTCCCAATTCCAGAG
* * *
72067 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAGCACAAGCTCAACTTCACAGCGAA
1 CCAATTTCAACTTCACAGCGAAGGATATT-GACTCGAGACAACACAAGCTCAACTTCACAACAAA
* * ** *
72132 GGGGCGGCTGGCTGTCAACAAACAATTTCTTAGTTCCAGAG
65 GGGACGGCTGACTGTCAACAAACAATTTCCCAATTCCAGAG
* * * * *
72173 CCAATTTTAACTTCACGGCGGAGGATATTAGACTCGAAACAATACAA
1 CCAATTTCAACTTCACAGCGAAGGATATT-GACTCGAGACAACACAA
72220 CTTACTTGGA
Statistics
Matches: 133, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
105 29 0.22
106 104 0.78
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.22
Consensus pattern (105 bp):
CCAATTTCAACTTCACAGCGAAGGATATTGACTCGAGACAACACAAGCTCAACTTCACAACAAAG
GGACGGCTGACTGTCAACAAACAATTTCCCAATTCCAGAG
Found at i:72565 original size:86 final size:87
Alignment explanation
Indices: 72466--72637 Score: 283
Period size: 86 Copynumber: 2.0 Consensus size: 87
72456 CAGTTTCTCT
*
72466 TGAAACATAAACATTGAAAACATTGCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTGCCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCCT
*
72531 TGAAACGAAA-TTTGTCTCCCC
66 TGAAACAAAATTTTGTCTCCCC
* * * *
72552 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTGCCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCCT
72617 TGAAACAAAATTTTGTCTCCC
66 TGAAACAAAATTTTGTCTCCC
72638 TTGAGACAGT
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
86 69 0.87
87 10 0.13
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (87 bp):
TGAAACATAAACATTGAAAACATTGCCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCCT
TGAAACAAAATTTTGTCTCCCC
Found at i:72649 original size:37 final size:37
Alignment explanation
Indices: 72574--72762 Score: 130
Period size: 37 Copynumber: 5.4 Consensus size: 37
72564 ATTGAAAACA
* * * * *
72574 TTTCCCTTGAAA-TAAATTTTATCTCGCTTGGGGTAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
72610 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
* ** * * *
72647 TTTCTCTTGAAACATAAAAATTG--------AAAACA-
1 TTTCCCTTGAAACA-AAATTTTGTCTCCCTTGAGATAG
* ** *
72676 TTTCCTTTGAAA-TTAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
72712 TTTTCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
72749 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
72763 TAAACCTTGA
Statistics
Matches: 114, Mismatches: 27, Indels: 23
0.70 0.16 0.14
Matches are distributed among these distances:
27 5 0.04
29 10 0.09
30 4 0.04
35 3 0.03
36 22 0.19
37 64 0.56
38 6 0.05
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
Found at i:72674 original size:102 final size:102
Alignment explanation
Indices: 72552--72789 Score: 377
Period size: 102 Copynumber: 2.3 Consensus size: 102
72542 TTGTCTCCCC
* *
72552 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
72617 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
66 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
* * * * * *
72654 TGAAACATAAAAATTGAAAACATTTCCTTTGAAATTAATTTTGTCTCTCTTGAGATAGTTTTCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
*
72719 TGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTCT
66 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
* *
72756 TGAAACATAAACCTTGAAAACGTTTCCCTTGAAA
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAA
72790 CATAAAATAT
Statistics
Matches: 123, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 123 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (102 bp):
TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
Found at i:72927 original size:51 final size:52
Alignment explanation
Indices: 72829--72930 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 52
72819 AACGAGTTTT
*
72829 GAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCCTC
1 GAGACAATTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCCTC
*
72881 GAGACAATTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGATAGTTTCCCT
1 GAGACAATTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCCT
72931 TGAAACAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 29 0.60
52 19 0.40
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (52 bp):
GAGACAATTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCCTC
Found at i:73054 original size:36 final size:36
Alignment explanation
Indices: 72962--73077 Score: 144
Period size: 36 Copynumber: 3.2 Consensus size: 36
72952 CTTTTCCTTG
* *
72962 AAACAAATTTCGTCCCCCTTGAGACAGTTTC-TTTT
1 AAACAAATTTTGTCCCTCTTGAGACAGTTTCTTTTT
* * *
72997 AGAACTAAGTTTTGTCTCTCTTGAGACAATTTCTTTTT
1 A-AAC-AAATTTTGTCCCTCTTGAGACAGTTTCTTTTT
* *
73035 AAACAAATTTTGTCCCTCTTGAGACAGTTTCTCTTG
1 AAACAAATTTTGTCCCTCTTGAGACAGTTTCTTTTT
73071 AAACAAA
1 AAACAAA
73078 AAAAACCTTG
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
35 1 0.01
36 37 0.54
37 25 0.37
38 5 0.07
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (36 bp):
AAACAAATTTTGTCCCTCTTGAGACAGTTTCTTTTT
Found at i:74339 original size:2 final size:2
Alignment explanation
Indices: 74332--74380 Score: 53
Period size: 2 Copynumber: 24.5 Consensus size: 2
74322 GTTTATTAAT
* * * * *
74332 TA TA TA TA TA TA TA TA TA TT TT TT TA TT TT TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74374 TA TA TA T
1 TA TA TA T
74381 TTTACTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (2 bp):
TA
Found at i:74425 original size:23 final size:22
Alignment explanation
Indices: 74372--74426 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 22
74362 TATATATATA
74372 TATATATATTTTACTTTTTTTAT
1 TATATATA-TTTACTTTTTTTAT
74395 TAT-T-TATTTA-TTTGTTTTATT
1 TATATATATTTACTTT-TTTTA-T
74416 TATATATATTT
1 TATATATATTT
74427 TTCTTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 3 0.11
20 9 0.32
21 6 0.21
22 2 0.07
23 8 0.29
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (22 bp):
TATATATATTTACTTTTTTTAT
Found at i:74437 original size:46 final size:44
Alignment explanation
Indices: 74372--74459 Score: 108
Period size: 46 Copynumber: 2.0 Consensus size: 44
74362 TATATATATA
*
74372 TATATATATTTTACTTTTTT-TATTATTTATTTAT-TTGTTTTATT
1 TATATATATTTTACTTTTTTCT-TTATTT-TTTATATTATTTTATT
*
74416 TATATATATTTTTCTTCTTTTTCTTTATTTTTTATATTATTTTA
1 TATATATATTTTAC-T-TTTTTCTTTATTTTTTATATTATTTTA
74460 CTTACTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 13 0.34
45 6 0.16
46 18 0.47
47 1 0.03
ACGTcount: A:0.22, C:0.05, G:0.01, T:0.73
Consensus pattern (44 bp):
TATATATATTTTACTTTTTTCTTTATTTTTTATATTATTTTATT
Found at i:77581 original size:49 final size:50
Alignment explanation
Indices: 77527--77627 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
77517 CTAATATTAA
77527 ACCTAAAAG-TTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
*
77576 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGCAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
77626 AC
1 AC
77628 AAGACTAAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 9 0.18
50 41 0.82
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.45
Consensus pattern (50 bp):
ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
Found at i:78441 original size:40 final size:37
Alignment explanation
Indices: 78396--78497 Score: 132
Period size: 40 Copynumber: 2.6 Consensus size: 37
78386 TTTTTTTAGA
78396 TTATATATATATATATTATTTTATTATCAGTTTTATTCAT
1 TTATATATATATATATTATTTTATTAT--GTTTTATT-AT
* *
78436 TTATATATATATATATTTACTATTTTTTATTTTTTATTAT
1 TTATATATATATATA-TTA-T-TTTATTATGTTTTATTAT
78476 TTATATATATATATATTATTTT
1 TTATATATATATATATTATTTT
78498 TACTTTTTTA
Statistics
Matches: 57, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
37 3 0.05
38 1 0.02
39 3 0.05
40 32 0.56
41 10 0.18
42 1 0.02
43 7 0.12
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (37 bp):
TTATATATATATATATTATTTTATTATGTTTTATTAT
Found at i:78481 original size:36 final size:36
Alignment explanation
Indices: 78436--78512 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
78426 TTTTATTCAT
* *
78436 TTATATATATATATATTTACTATTTTTTA-TTTTTTA
1 TTATTTATATATATATATACTA-TTTTTACTTTTTTA
*
78472 TTATTTATATATATATATATTATTTTTACTTTTTTA
1 TTATTTATATATATATATACTATTTTTACTTTTTTA
78508 TTATT
1 TTATT
78513 ATTTTATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 6 0.16
36 31 0.84
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (36 bp):
TTATTTATATATATATATACTATTTTTACTTTTTTA
Found at i:78506 original size:44 final size:48
Alignment explanation
Indices: 78381--78525 Score: 136
Period size: 44 Copynumber: 3.2 Consensus size: 48
78371 TAGTATATAC
* * *
78381 TTTTATTT-TTT-TAGAT-TATATATATATATA-TTATTTTATTATCA
1 TTTTATTTATTTATATATATATATATATATTTACTTATTTTATTATTA
*
78425 GTTTTATTCA--T-T-TATATATATATATATTTAC-TATTTT-TTATT-
1 -TTTTATTTATTTATATATATATATATATATTTACTTATTTTATTATTA
*
78467 TTTTA-TTATTTATATATATATATATTATTTTTACTT-TTTTATTATTA
1 TTTTATTTATTTATATATATATATA-TATATTTACTTATTTTATTATTA
78514 TTTTATTTATTT
1 TTTTATTTATTT
78526 GTTTTTTTCT
Statistics
Matches: 82, Mismatches: 6, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
40 2 0.02
41 5 0.06
42 1 0.01
43 7 0.09
44 31 0.38
45 19 0.23
46 6 0.07
47 5 0.06
48 6 0.07
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (48 bp):
TTTTATTTATTTATATATATATATATATATTTACTTATTTTATTATTA
Found at i:78519 original size:40 final size:40
Alignment explanation
Indices: 78396--78519 Score: 116
Period size: 40 Copynumber: 3.1 Consensus size: 40
78386 TTTTTTTAGA
* *
78396 TTATATATATATATATTA-TTTTATTATCAGTT-TTATTCA-T
1 TTATATATATATATATTATTTTTACTAT--TTTATTATT-ATT
*
78436 TTATATATATATATATTTACTATTTT-TTATTTT-TTATTA-T
1 TTATATATATATATA-TTA-T-TTTTACTATTTTATTATTATT
*
78476 TTATATATATATATATTATTTTTACTTTTTTATTATTATT
1 TTATATATATATATATTATTTTTACTATTTTATTATTATT
78516 TTAT
1 TTAT
78520 TTATTTGTTT
Statistics
Matches: 74, Mismatches: 3, Indels: 14
0.81 0.03 0.15
Matches are distributed among these distances:
37 4 0.05
38 6 0.08
39 9 0.12
40 37 0.50
41 10 0.14
43 4 0.05
44 4 0.05
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (40 bp):
TTATATATATATATATTATTTTTACTATTTTATTATTATT
Found at i:79237 original size:32 final size:32
Alignment explanation
Indices: 79183--79284 Score: 141
Period size: 32 Copynumber: 3.2 Consensus size: 32
79173 GGAACAATGA
* *
79183 GGGCATCTTTGAAGATTCAACATCAAATGTTG
1 GGGCATTTTTTAAGATTCAACATCAAATGTTG
* * *
79215 GAGCATTTTTTTAGATTTAACATCAAATGTTG
1 GGGCATTTTTTAAGATTCAACATCAAATGTTG
* *
79247 GGGCATTTTTTAAGATTCAACATCGAATATTG
1 GGGCATTTTTTAAGATTCAACATCAAATGTTG
79279 GGGCAT
1 GGGCAT
79285 ATTTGGGAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (32 bp):
GGGCATTTTTTAAGATTCAACATCAAATGTTG
Found at i:79301 original size:64 final size:64
Alignment explanation
Indices: 79183--79302 Score: 143
Period size: 64 Copynumber: 1.9 Consensus size: 64
79173 GGAACAATGA
* *** *
79183 GGGCATCTTTGAAGATTCAACATCAAATGTTGGAGCATTTTTTTAGATTTAACATCAAATGTTG
1 GGGCATCTTTGAAGATTCAACATCAAATATTGGAGCATTTTGGGAGATTCAACATCAAATGTTG
* * * *
79247 GGGCATTTTTTAAGATTCAACATCGAATATTGGGGCATATTTGGGA-ATTCAACATC
1 GGGCATCTTTGAAGATTCAACATCAAATATTGGAGCAT-TTTGGGAGATTCAACATC
79303 CTGATGCAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
64 42 0.91
65 4 0.09
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (64 bp):
GGGCATCTTTGAAGATTCAACATCAAATATTGGAGCATTTTGGGAGATTCAACATCAAATGTTG
Found at i:80002 original size:106 final size:106
Alignment explanation
Indices: 79880--80202 Score: 457
Period size: 106 Copynumber: 3.0 Consensus size: 106
79870 ATATCGTGCC
* * * *
79880 ACTCGAGACAACACAAGTTCAACTCCACAATGAAGGGATGACTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
*
79945 AATTTCAGAGCCAATTTCAACTTCATAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
79986 ACTCGAGACAACACAAGTTCAACTTCACAACAAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
*
80051 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * * **
80092 ACTTGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGGCTGTCAACAAACAATTTCTT
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* * * * * *
80157 AGTTCCATAGCCAATTTTAACTTCACGGCGGAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
80198 ACTCG
1 ACTCG
80203 GAACAATACA
Statistics
Matches: 193, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 193 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (106 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:80644 original size:37 final size:37
Alignment explanation
Indices: 80569--80757 Score: 132
Period size: 37 Copynumber: 5.4 Consensus size: 37
80559 ATTGAAAACA
* * * * *
80569 TTTCCCTTGAAA-TAAATTTTATCTCGCTTGGGGTAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
80605 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
* * * *
80642 TTTCTCTTGAAACATAAA---------CATTGA-AAACA
1 TTTCCCTTGAAACA-AAATTTTGTCTCCCTTGAGATA-G
* ** *
80671 TTTCCTTTGAAA-TTAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
80707 TTTCCCTAGAAACAAAATTTTGTCTCCCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
80744 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
80758 TAAACCTTGA
Statistics
Matches: 114, Mismatches: 25, Indels: 27
0.69 0.15 0.16
Matches are distributed among these distances:
27 2 0.02
28 2 0.02
29 15 0.13
36 26 0.23
37 66 0.58
38 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
Found at i:80656 original size:87 final size:87
Alignment explanation
Indices: 80460--80632 Score: 283
Period size: 87 Copynumber: 2.0 Consensus size: 87
80450 CAGTTTCTCT
* *
80460 TGAAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTATCTTGATTGAGATAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTCCCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCCT
*
80525 TGAAACGAAATTTTGTCTCCCC
66 TGAAACAAAATTTTGTCTCCCC
* * * *
80547 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTCCCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCCT
80612 TGAAACAAAATTTTGTCTCCC
66 TGAAACAAAATTTTGTCTCCC
80633 TTGAGACAGT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (87 bp):
TGAAACATAAACATTGAAAACATTCCCCTTGAAATAAATTTTATCTCGATTGAGATAGTTTCCCT
TGAAACAAAATTTTGTCTCCCC
Found at i:80657 original size:102 final size:102
Alignment explanation
Indices: 80547--80784 Score: 377
Period size: 102 Copynumber: 2.3 Consensus size: 102
80537 TTGTCTCCCC
* *
80547 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGGGGTAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
*
80612 TGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
66 AGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
* * * *
80649 TGAAACATAAACATTGAAAACATTTCCTTTGAAATTAATTTTGTCTCTCTTGAGATAGTTTCCCT
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
*
80714 AGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTCT
66 AGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
* **
80751 TGAAACATAAACCTTGAAAATGTTTCCCTTGAAA
1 TGAAACATAAACATTGAAAACATTTCCCTTGAAA
80785 CATAAAATAT
Statistics
Matches: 124, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 124 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (102 bp):
TGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCT
AGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
Found at i:80878 original size:15 final size:15
Alignment explanation
Indices: 80858--80892 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
80848 TCTTGTCTCT
*
80858 CTTGAGATAGTTTCC
1 CTTGAGACAGTTTCC
80873 CTTGAGACAGTTTCC
1 CTTGAGACAGTTTCC
80888 CTTGA
1 CTTGA
80893 AACAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (15 bp):
CTTGAGACAGTTTCC
Found at i:80924 original size:51 final size:52
Alignment explanation
Indices: 80822--80928 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
80812 AAAACGAGTT
*
80822 TTGAGACAGTTTCTCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCC
1 TTGAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCC
*
80874 TTGAGACAGTTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGATAGTTTCCC
1 TTGAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCC
80925 TTGA
1 TTGA
80929 AACAAAATCT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 32 0.60
52 21 0.40
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (52 bp):
TTGAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGATAGTTTCCC
Found at i:81056 original size:36 final size:36
Alignment explanation
Indices: 80957--81072 Score: 137
Period size: 36 Copynumber: 3.2 Consensus size: 36
80947 CTTTTCCTTG
*
80957 AAACAAATTTCGTCTCC-CTTGAGACAGTTTC-TTTT
1 AAACAAATTTTGTC-CCTCTTGAGACAGTTTCTTTTT
* * *
80992 ATAACTAAGTTTTATCTCTCTTGAGACAGTTTCTTTTT
1 A-AAC-AAATTTTGTCCCTCTTGAGACAGTTTCTTTTT
* *
81030 AAACAAATTTTGTCCCTCTTGAGACAGTTTCTCTTG
1 AAACAAATTTTGTCCCTCTTGAGACAGTTTCTTTTT
81066 AAACAAA
1 AAACAAA
81073 AAAAAAACCT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
35 1 0.01
36 38 0.56
37 24 0.35
38 5 0.07
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (36 bp):
AAACAAATTTTGTCCCTCTTGAGACAGTTTCTTTTT
Found at i:81125 original size:39 final size:35
Alignment explanation
Indices: 81057--81144 Score: 115
Period size: 39 Copynumber: 2.4 Consensus size: 35
81047 CTTGAGACAG
*
81057 TTTCTCTTGAAACA-AAAAAAAAACCTTGAAATTA
1 TTTCTCTTGAAACACAAAAAAAAACCTTGAAAATA
*
81091 TTTCTCTTGAAACACACACACAAAAAACCTTTGAAAATG
1 TTTCTCTTGAAACACA-A-A-AAAAAACC-TTGAAAATA
81130 TTTCTCTTGAAACAC
1 TTTCTCTTGAAACAC
81145 CAAACCCTCG
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
34 14 0.30
35 1 0.02
36 1 0.02
37 1 0.02
38 8 0.17
39 22 0.47
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (35 bp):
TTTCTCTTGAAACACAAAAAAAAACCTTGAAAATA
Found at i:82279 original size:24 final size:23
Alignment explanation
Indices: 82236--82313 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
82226 TCATGTAATA
*
82236 TTTTTTACATTTTATGTATTTTC
1 TTTTTTACATTTTATATATTTTC
*
82259 TTTTTTAC-TTTAGTATATATTTTTAT
1 TTTTTTACATTT--TATATA-TTTT-C
* * * *
82285 TTTTTTAGATTATATATATATTA
1 TTTTTTACATTTTATATATTTTC
82308 TTTTTT
1 TTTTTT
82314 TATTATCAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
22 3 0.07
23 14 0.32
24 8 0.18
25 10 0.23
26 7 0.16
27 2 0.05
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.69
Consensus pattern (23 bp):
TTTTTTACATTTTATATATTTTC
Found at i:82374 original size:32 final size:30
Alignment explanation
Indices: 82324--82431 Score: 100
Period size: 32 Copynumber: 3.5 Consensus size: 30
82314 TATTATCAGT
*
82324 TTTATTAATTTATATATATATATTTACTATTTA
1 TTTATTTA-TTATATATATATATTTA-T-TTTA
82357 TTTATTTATTATATATATATATATTATTTTTA
1 TTTATTTATTATATATATATAT-TTA-TTTTA
*
82389 CTTTA-TTATTAT-TAT-TTTATTTATTTGT-
1 -TTTATTTATTATATATATATATTTATTT-TA
82417 TTTATTTA-TATATAT
1 TTTATTTATTATATAT
82432 TTTTCTTCTT
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
27 7 0.10
28 9 0.13
29 4 0.06
30 4 0.06
31 3 0.04
32 25 0.37
33 15 0.22
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (30 bp):
TTTATTTATTATATATATATATTTATTTTA
Found at i:82381 original size:15 final size:15
Alignment explanation
Indices: 82331--82433 Score: 69
Period size: 15 Copynumber: 7.3 Consensus size: 15
82321 AGTTTTATTA
82331 ATTTA-TATATATAT
1 ATTTATTATATATAT
* * *
82345 ATTTACTATTTATTT
1 ATTTATTATATATAT
82360 ATTTATTATATATAT
1 ATTTATTATATATAT
* *
82375 ATATATTAT-T-TTT
1 ATTTATTATATATAT
82388 ACTTTATTAT-TAT-T
1 A-TTTATTATATATAT
* *
82402 ATTTTATT-TATTTGT
1 A-TTTATTATATATAT
82417 -TTTATT-TATATAT
1 ATTTATTATATATAT
82430 ATTT
1 ATTT
82434 TTCTTCTTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 12
0.75 0.13 0.13
Matches are distributed among these distances:
13 15 0.21
14 27 0.38
15 29 0.41
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (15 bp):
ATTTATTATATATAT
Found at i:82394 original size:37 final size:37
Alignment explanation
Indices: 82295--82403 Score: 97
Period size: 37 Copynumber: 3.0 Consensus size: 37
82285 TTTTTTAGAT
82295 TATATATATATTA-TTTT--TTTATTATCAGTTTTATTA-A
1 TATATATATATTATTTTTACTTTATT-T-A--TTTATTATA
* *
82332 TTTATATATA-TATATTTACTATTTATTTATTTATTATA
1 TATATATATATTATTTTTAC--TTTATTTATTTATTATA
82370 TATATATATATTATTTTTACTTTA-TTA-TTATTAT
1 TATATATATATTATTTTTACTTTATTTATTTATTAT
82404 TTTATTTATT
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
35 7 0.11
36 5 0.08
37 23 0.38
38 10 0.16
39 9 0.15
40 1 0.02
41 6 0.10
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (37 bp):
TATATATATATTATTTTTACTTTATTTATTTATTATA
Found at i:82413 original size:4 final size:4
Alignment explanation
Indices: 82324--82551 Score: 57
Period size: 4 Copynumber: 55.8 Consensus size: 4
82314 TATTATCAGT
* * * *
82324 TTTA TTAA TTTA TATATA TATA TTTA -CTA TTTA TTTA TTTA TTATA TATA
1 TTTA TTTA TTTA T-T-TA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA
* *
82374 TATA TATTA -TT- TTTA CTTTA -TTA -TTA -TTA TTTTA TTTA TTTGT
1 TTTA T-TTA TTTA TTTA -TTTA TTTA TTTA TTTA -TTTA TTTA TTT-A
* * * * *
82417 TTTA TTTA TATA TATT- TTTC TTCTT TTTC TTTA TTTT TTATA TTTA TTTTA
1 TTTA TTTA TTTA T-TTA TTTA TT-TA TTTA TTTA TTTA TT-TA TTTA -TTTA
* * * * *
82468 CTTA -CTA TTTTA TTT- TTTC TTTC TTTA TCTTA TCT- TTTA TTTAA TTTA
1 TTTA TTTA -TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTT-A TTTA
* *
82516 TTT- TTT- TTCA TTTTAA TTTAA TTAA TTTA TTTA TTT
1 TTTA TTTA TTTA -TTT-A TTT-A TTTA TTTA TTTA TTT
82552 CTTACCTTTT
Statistics
Matches: 172, Mismatches: 27, Indels: 50
0.69 0.11 0.20
Matches are distributed among these distances:
3 29 0.17
4 93 0.54
5 46 0.27
6 4 0.02
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:82427 original size:51 final size:50
Alignment explanation
Indices: 82353--82465 Score: 131
Period size: 51 Copynumber: 2.2 Consensus size: 50
82343 ATATTTACTA
82353 TTTATTTATTTATTATATATATATATATTATTT-TTACTTTATT-ATTATTAT
1 TTTATTTATTTATTATATATATATATATT-TTTCTT-CTTT-TTCATTATTAT
* * * * *
82404 TTTATTTATTTGTTTTATTTATATATATTTTTCTTCTTTTTCTTTATTTT
1 TTTATTTATTTATTATATATATATATATTTTTCTTCTTTTTCATTATTAT
82454 TTATATTTATTT
1 TT-TATTTATTT
82466 TACTTACTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
49 2 0.04
50 15 0.28
51 37 0.69
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.72
Consensus pattern (50 bp):
TTTATTTATTTATTATATATATATATATTTTTCTTCTTTTTCATTATTAT
Found at i:85590 original size:49 final size:50
Alignment explanation
Indices: 85536--85636 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
85526 CTAATATTAA
85536 ACCTAAAAG-TTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
*
85585 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGCAAATTAAAAATTT
1 ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
85635 AC
1 AC
85637 AAGACTAAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 9 0.18
50 41 0.82
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.45
Consensus pattern (50 bp):
ACCTAAAAGTTTTTTAATATTTTATTTGAATAATTGAAAATTAAAAATTT
Found at i:86346 original size:2 final size:2
Alignment explanation
Indices: 86339--86366 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
86329 GAAATATGTT
86339 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86367 AGTTTAGGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92575 original size:184 final size:182
Alignment explanation
Indices: 91927--92773 Score: 1092
Period size: 182 Copynumber: 4.6 Consensus size: 182
91917 GATCTAAATA
*** * * * *
91927 AAAAATGTATCGATCCATATTAATATAATAAGTAAAAATATGAAAAAATCGGT-T-TAATTATGA
1 AAAAATGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAATCGGTCTCGAA--ATGA
* ** * * * * *
91990 TAAAACCGGTAAAGTACTACCGGATATGTTGAAAGTATCGATTAGATTGAA-ATAAGTATCGACA
64 CAAAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGA-TA-CTTTAATATAAGTATCGACA
* * *
92054 CTTTGAGAATTTAAAAGAGAAGCAGTAATAGCGCCTAAAAAGTGTCGATACTTTAT
127 CTTTGGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCAATACTTTAT
* * * * *
92110 AAAAATGTATTGATCCATAACGATATAACATGTAAAAATATAATAAAACCGGTCTCGAAATGACA
1 AAAAATGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGACA
* * * * *
92175 AAATCGATAAAGCGCTA-CAAGATTTATTGAAAGTGTCAATACTTTAATATAAGTATCGACACTT
66 AAACCGGTAAAGCGCTACCGA-ATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
* * * * * *
92239 TGGGAATTTCAAAGAGAAGCAGTAATATCGTCTATAAATTTTCAATACTTTAC
130 TGGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCAATACTTTAT
* * *
92292 AAAAATGTATTGATCCATAACGATATAACTGGTAAAAATATGACAAAATCGGTCTCGAAATGATA
1 AAAAATGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGACA
* * * * *
92357 AAACTGGTAAAGCGTTA-CTAGATATATTGAAAGTGTCGATACTTTCATATAAGTATCAACACTT
66 AAACCGGTAAAGCGCTACCGA-ATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
92421 TGGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCAATACTTTAT
130 TGGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCAATACTTTAT
* * *
92474 AAAAAAATGTATCGATCCATAATGATATAACAGGTAAAAATATGATAAAACCGGTCTCGAAATGA
1 --AAAAATGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGA
* *
92539 CAAAACCGGTAAAACGCTACCGAATATATTGAAAGTGTCGATACTTTTATATAAGTATCGACACT
64 CAAAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACT
* *
92604 TTGGGAATTTAAAAGAGAAGCAGTAATAGCGTCTATAAAGTGTCGATACTTTAT
129 TTGGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCAATACTTTAT
* * *
92658 AAAAATGTATCAATCCATAACAATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGAAA
1 AAAAATGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGACA
* * *
92723 AAACCGGTAAAGCGCTACCGGATATATTGAAAGTGGCAATACTTTAATATA
66 AAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATATA
92774 GATACTTTCA
Statistics
Matches: 579, Mismatches: 78, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
181 4 0.01
182 329 0.57
183 76 0.13
184 166 0.29
185 4 0.01
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (182 bp):
AAAAATGTATCGATCCATAACGATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGACA
AAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
GGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCAATACTTTAT
Found at i:92598 original size:366 final size:364
Alignment explanation
Indices: 91927--92773 Score: 1191
Period size: 366 Copynumber: 2.3 Consensus size: 364
91917 GATCTAAATA
** * * *
91927 AAAAATGTATCGATCCATATTAATATAA-TAAGTAAAAATATGAAAAAATCGGT-T-TAATTATG
1 AAAAATGTATCGATCCATAACAATATAACT-GGTAAAAATATGACAAAATCGGTCTCGAA--ATG
** * * * * *
91989 ATAAAACCGGTAAAGTACTACCGGATATGTTGAAAGTATCGATTAGATTGAA-ATAAGTATCGAC
63 ATAAAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGA-TA-CTTTAATATAAGTATCAAC
*
92053 ACTTTGAGAATTTAAAAGAGAAGCAGTAATAGCGCCTAAAAAGTGTCGATACTTTATAAAAATGT
126 ACTTTGAGAATTTAAAAGAGAAGCAGTAATAGCGCCTAAAAAGTGTCAATACTTTATAAAAATGT
* * *
92118 ATTGATCCATAACGATATAACATGTAAAAATATAATAAAACCGGTCTCGAAATGACAAAATCGAT
191 ATCGATCCATAACGATATAACAGGTAAAAATATAATAAAACCGGTCTCGAAATGACAAAACCGAT
* *
92183 AAAGCGCTACAAGATTTATTGAAAGTGTCAATACTTTAATATAAGTATCGACACTTTGGGAATTT
256 AAAACGCTACAAGATATATTGAAAGTGTCAATACTTTAATATAAGTATCGACACTTTGGGAATTT
* * * *
92248 CAAAGAGAAGCAGTAATATCGTCTATAAATTTTCAATACTTTAC
321 AAAAGAGAAGCAGTAATAGCGTCTATAAAGTGTCAATACTTTAC
* *
92292 AAAAATGTATTGATCCATAACGATATAACTGGTAAAAATATGACAAAATCGGTCTCGAAATGATA
1 AAAAATGTATCGATCCATAACAATATAACTGGTAAAAATATGACAAAATCGGTCTCGAAATGATA
* * ** *
92357 AAACTGGTAAAGCGTTACTAGATATATTGAAAGTGTCGATACTTTCATATAAGTATCAACACTTT
66 AAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCAACACTTT
* *
92422 GGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAAAGTGTCAATACTTTATAAAAAAATGTATC
131 GAGAATTTAAAAGAGAAGCAGTAATAGCGCCTAAAAAGTGTCAATACTTTAT--AAAAATGTATC
* * *
92487 GATCCATAATGATATAACAGGTAAAAATATGATAAAACCGGTCTCGAAATGACAAAACCGGTAAA
194 GATCCATAACGATATAACAGGTAAAAATATAATAAAACCGGTCTCGAAATGACAAAACCGATAAA
* * *
92552 ACGCTAC-CGAATATATTGAAAGTGTCGATACTTTTATATAAGTATCGACACTTTGGGAATTTAA
259 ACGCTACAAG-ATATATTGAAAGTGTCAATACTTTAATATAAGTATCGACACTTTGGGAATTTAA
* *
92616 AAGAGAAGCAGTAATAGCGTCTATAAAGTGTCGATACTTTAT
323 AAGAGAAGCAGTAATAGCGTCTATAAAGTGTCAATACTTTAC
* * *
92658 AAAAATGTATCAATCCATAACAATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGAAA
1 AAAAATGTATCGATCCATAACAATATAACTGGTAAAAATATGACAAAATCGGTCTCGAAATGATA
* *
92723 AAACCGGTAAAGCGCTACCGGATATATTGAAAGTGGCAATACTTTAATATA
66 AAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATA
92774 GATACTTTCA
Statistics
Matches: 424, Mismatches: 51, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
363 3 0.01
364 67 0.16
365 83 0.20
366 269 0.63
367 2 0.00
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (364 bp):
AAAAATGTATCGATCCATAACAATATAACTGGTAAAAATATGACAAAATCGGTCTCGAAATGATA
AAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCAACACTTT
GAGAATTTAAAAGAGAAGCAGTAATAGCGCCTAAAAAGTGTCAATACTTTATAAAAATGTATCGA
TCCATAACGATATAACAGGTAAAAATATAATAAAACCGGTCTCGAAATGACAAAACCGATAAAAC
GCTACAAGATATATTGAAAGTGTCAATACTTTAATATAAGTATCGACACTTTGGGAATTTAAAAG
AGAAGCAGTAATAGCGTCTATAAAGTGTCAATACTTTAC
Done.