genome.fa.s5151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005151.1 Hibiscus syriacus cultivar Beakdansim tig00011606_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43773

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
799--896	47	2.0	49	94	3	173	43	6	6	43	1.54
2590--2742	12	12.3	12	68	21	68	18	6	1	73	1.15
2588--2661	21	3.3	21	72	20	53	14	5	1	78	1.00
2602--2701	23	4.2	23	71	16	60	17	7	2	74	1.14
2597--2690	37	2.6	37	74	16	90	18	5	1	75	1.05
3293--3373	33	2.5	33	85	4	119	29	11	17	41	1.84
3971--4231	94	2.7	95	82	10	337	35	26	19	19	1.95
4034--4290	105	2.4	105	86	1	345	33	24	20	21	1.97
4536--4708	87	2.0	87	93	0	292	31	20	13	34	1.91
4623--4857	99	2.3	102	88	2	359	31	18	13	37	1.89
4932--4965	15	2.3	15	89	0	50	23	17	20	38	1.93
4897--5001	51	2.0	51	92	1	174	26	20	16	36	1.94
5030--5133	36	2.9	36	81	8	131	26	19	11	42	1.85
6294--6361	23	2.9	23	78	4	73	25	5	4	64	1.35
6387--6604	4	52.8	4	69	20	51	24	5	0	69	1.14
6386--6487	29	3.6	29	79	12	97	30	1	0	66	1.09
6332--6461	36	3.7	35	73	19	119	32	2	1	63	1.16
6441--6575	17	8.1	16	68	15	78	18	6	1	73	1.13
6320--6492	75	2.3	71	78	14	179	29	2	2	65	1.17
6394--6491	28	3.6	27	70	16	69	29	2	1	67	1.09
6410--6507	44	2.2	46	82	12	125	23	4	1	71	1.09
9578--9678	50	2.0	49	96	1	184	43	5	5	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10446--10472	2	13.5	2	100	0	54	48	0	0	51	1.00
10386--10453	25	2.8	25	76	10	63	25	7	4	63	1.39
10494--10561	31	2.1	32	86	10	95	30	2	0	66	1.07
10444--10561	39	3.0	38	77	10	128	33	3	0	61	1.18
10510--10623	45	2.4	45	78	16	117	22	3	0	72	1.05
11246--11358	32	3.5	32	85	3	138	30	12	19	37	1.89
11935--12197	106	2.7	95	82	11	339	34	25	19	19	1.96
11998--12256	106	2.4	106	87	0	356	34	24	19	21	1.97
12612--12800	37	5.4	37	69	14	130	28	17	13	40	1.88
12503--12675	87	2.0	87	93	0	292	32	19	13	34	1.91
12590--12827	102	2.3	102	90	0	377	32	18	12	36	1.88
12867--12968	51	2.0	52	94	1	179	25	23	14	36	1.93
13000--13115	36	3.2	36	81	6	144	28	20	12	38	1.88
14313--14457	75	2.0	73	84	10	188	31	2	1	64	1.13
14398--14514	49	2.3	50	81	11	134	23	3	0	72	1.05
14423--14556	47	2.7	47	81	12	121	19	7	1	71	1.17
17582--17682	50	2.0	50	96	1	186	43	5	5	44	1.53
18450--18474	2	12.5	2	100	0	50	48	0	0	52	1.00
18456--18576	38	3.1	38	79	12	138	33	3	1	61	1.22
19263--19343	32	2.5	32	87	2	126	30	12	17	39	1.86
19255--19375	32	3.8	31	80	8	118	31	13	19	35	1.90
21553--21696	73	2.0	74	98	1	281	35	10	9	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25866--26709	182	4.6	181	87	2	1163	42	13	16	27	1.86
25866--26713	365	2.3	361	88	3	1236	42	13	16	27	1.86
28562--28612	24	2.2	22	89	6	75	49	0	5	45	1.26
30868--30911	19	2.3	19	92	0	70	36	2	9	52	1.46
31364--32707	201	6.8	201	88	4	2011	36	14	15	33	1.88
31995--32571	186	3.1	185	82	10	743	36	13	15	34	1.87
32181--32707	200	2.7	195	89	2	770	37	12	15	34	1.85
31794--32707	381	2.3	382	87	4	1267	37	13	14	34	1.86
31364--32707	582	2.3	583	89	4	2020	36	14	15	33	1.88
36866--38237	198	7.0	198	86	3	1746	39	14	16	30	1.88
36866--38237	393	3.5	392	87	4	1812	39	14	16	30	1.88
39814--39858	19	2.4	19	96	0	81	31	6	11	51	1.63
40862--40897	15	2.4	15	100	0	72	25	22	30	22	1.99
42584--43051	197	2.4	198	84	5	585	40	14	15	30	1.87
43090--43248	85	1.9	85	93	0	273	33	15	11	38	1.84
43173--43216	23	1.9	23	90	0	70	38	20	6	34	1.79

Tables:   1

The End!