Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005152.1 Hibiscus syriacus cultivar Beakdansim tig00011617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92187
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Found at i:333 original size:5 final size:5
Alignment explanation
Indices: 319--364 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
309 AGGCAACAAA
* *
319 TTTTC CTTTC TTTTC TTTTC TTTTC TTTTTC TTTTTC TTCTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC -TTTTC TTTTC TTTT
365 TCCATCATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
5 25 0.69
6 11 0.31
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:337 original size:15 final size:15
Alignment explanation
Indices: 319--364 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
309 AGGCAACAAA
319 TTTTCCTTTCTTTTC
1 TTTTCCTTTCTTTTC
*
334 TTTTCTTTTCTTTTTC
1 TTTTCCTTTC-TTTTC
*
350 TTTTTCTTCTCTTTT
1 TTTTCCTT-TCTTTT
365 TCCATCATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 9 0.35
16 15 0.58
17 2 0.08
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTCCTTTCTTTTC
Found at i:365 original size:11 final size:11
Alignment explanation
Indices: 319--366 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
309 AGGCAACAAA
*
319 TTTTCCTTTC-
1 TTTTCTTTTCT
329 TTTTCTTTTC-
1 TTTTCTTTTCT
339 TTTTCTTTTTCT
1 TTTTC-TTTTCT
*
351 TTTTCTTCTCT
1 TTTTCTTTTCT
362 TTTTC
1 TTTTC
367 CATCATCTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
10 14 0.41
11 15 0.44
12 5 0.15
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTCTTTTCT
Found at i:458 original size:23 final size:24
Alignment explanation
Indices: 424--480 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 24
414 AAGACTTAAG
*
424 TTCTTC-ACTTCGATGATCATCAT-
1 TTCTTCGA-TTCGATGATCACCATC
447 TTCTTCGATTCGATGATCACCATC
1 TTCTTCGATTCGATGATCACCATC
471 TTCTTCGATT
1 TTCTTCGATT
481 GTCAAGAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 20 0.65
24 11 0.35
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.44
Consensus pattern (24 bp):
TTCTTCGATTCGATGATCACCATC
Found at i:1479 original size:30 final size:30
Alignment explanation
Indices: 1444--1503 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
1434 GGACATAAAT
* *
1444 ATATACATTCCAACTAGAATAGCAAAAACA
1 ATATACATGCCAACTAGAATAACAAAAACA
*
1474 ATATACATGCTAACTAGAATAACAAAAACA
1 ATATACATGCCAACTAGAATAACAAAAACA
1504 TCAAGAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.55, C:0.18, G:0.07, T:0.20
Consensus pattern (30 bp):
ATATACATGCCAACTAGAATAACAAAAACA
Found at i:3456 original size:6 final size:6
Alignment explanation
Indices: 3445--3508 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
3435 ATGAACAGTG
* ** * **
3445 AATGAT AATGAT AAGGAT AATGAT GTTGAT AATGAT AATAAT GTTGAT
1 AATGAT AATGAT AATGAT AATGAT AATGAT AATGAT AATGAT AATGAT
*
3493 AATGAT AGTGAT AATG
1 AATGAT AATGAT AATG
3509 CTGATGATAT
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.34
Consensus pattern (6 bp):
AATGAT
Found at i:7684 original size:18 final size:18
Alignment explanation
Indices: 7663--7697 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7653 TCATTATCCT
* *
7663 TATTATTATTCTTATCAC
1 TATTAGTATTATTATCAC
7681 TATTAGTATTATTATCA
1 TATTAGTATTATTATCA
7698 TTCATATCCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.54
Consensus pattern (18 bp):
TATTAGTATTATTATCAC
Found at i:10822 original size:23 final size:23
Alignment explanation
Indices: 10754--10822 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
10744 CAATCTTATA
*
10754 TGGCACTTCGGTGCATTTCTACA
1 TGGCACTTCGGTGCATTTCTACG
* * *
10777 TGACACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCATTTCTACG
*
10800 TGGCACTTCGGTGCATTTATACG
1 TGGCACTTCGGTGCATTTCTACG
10823 AGTTGGGGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (23 bp):
TGGCACTTCGGTGCATTTCTACG
Found at i:14707 original size:16 final size:16
Alignment explanation
Indices: 14686--14716 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14676 TTCAACTGTC
14686 TTTTAAAAGTAAATGA
1 TTTTAAAAGTAAATGA
14702 TTTTAAAAGTAAATG
1 TTTTAAAAGTAAATG
14717 TGACACCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (16 bp):
TTTTAAAAGTAAATGA
Found at i:18330 original size:65 final size:64
Alignment explanation
Indices: 18240--18375 Score: 202
Period size: 65 Copynumber: 2.1 Consensus size: 64
18230 ATACTAATTA
* * *
18240 CATTCGATGTTTCAAAAGAACCAGGAGTGCATCGATGCATGGTATGTGCATCGGTACATAAAATG
1 CATTCGATGTTTCAAAAGAACCAGGAGTGCATCGATACATGG-ATGTGCATCGATACACAAAATG
* *
18305 CATTTGATGTTTCAATA-AACTCAGGAGTGCATCGATACATGGATGTGCATCGATACACAAAATG
1 CATTCGATGTTTCAAAAGAAC-CAGGAGTGCATCGATACATGGATGTGCATCGATACACAAAATG
18369 CATTCGA
1 CATTCGA
18376 ATTAGGGTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
64 29 0.45
65 35 0.55
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (64 bp):
CATTCGATGTTTCAAAAGAACCAGGAGTGCATCGATACATGGATGTGCATCGATACACAAAATG
Found at i:20575 original size:14 final size:13
Alignment explanation
Indices: 20532--20575 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
20522 TCCTAATGGG
20532 CAATGTTTGAAAA
1 CAATGTTTGAAAA
** *
20545 TTATTTTTGAAAA
1 CAATGTTTGAAAA
20558 CAATGTTTGAATAA
1 CAATGTTTGAA-AA
20572 CAAT
1 CAAT
20576 ATGTAATTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
13 18 0.75
14 6 0.25
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (13 bp):
CAATGTTTGAAAA
Found at i:21126 original size:21 final size:21
Alignment explanation
Indices: 21049--21168 Score: 71
Period size: 21 Copynumber: 5.5 Consensus size: 21
21039 AACCCGACGG
* *
21049 GTGTATCGATACAC-TGCATA
1 GTGTATCGATGCACATTCATA
* *
21069 GGTGTATCGATGCACATTTAAA
1 -GTGTATCGATGCACATTCATA
* * *
21091 GAATGCATCGGTGCACCTTCATA
1 G--TGTATCGATGCACATTCATA
* *
21114 GTGTATCGATGCATATTCAATG
1 GTGTATCGATGCACATTC-ATA
* * * *
21136 GATGCATCGGTACACTTTCATA
1 G-TGTATCGATGCACATTCATA
21158 GTGTATCGATG
1 GTGTATCGATG
21169 TATAGAGCAC
Statistics
Matches: 71, Mismatches: 23, Indels: 10
0.68 0.22 0.10
Matches are distributed among these distances:
21 34 0.48
22 9 0.13
23 28 0.39
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (21 bp):
GTGTATCGATGCACATTCATA
Found at i:21141 original size:44 final size:44
Alignment explanation
Indices: 21065--21168 Score: 145
Period size: 44 Copynumber: 2.3 Consensus size: 44
21055 CGATACACTG
* *
21065 CATAGGTGTATCGATGCACATTTAAAGAATGCATCGGTGCACCTT
1 CATA-GTGTATCGATGCACATTCAAAGAATGCATCGGTACACCTT
* * * *
21110 CATAGTGTATCGATGCATATTCAATGGATGCATCGGTACACTTT
1 CATAGTGTATCGATGCACATTCAAAGAATGCATCGGTACACCTT
21154 CATAGTGTATCGATG
1 CATAGTGTATCGATG
21169 TATAGAGCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 49 0.92
45 4 0.08
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (44 bp):
CATAGTGTATCGATGCACATTCAAAGAATGCATCGGTACACCTT
Found at i:23147 original size:15 final size:15
Alignment explanation
Indices: 23129--23163 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
23119 AACATCATGA
23129 GTTTCCTCATCTTTC
1 GTTTCCTCATCTTTC
*
23144 GTTTCCTCATTTTTC
1 GTTTCCTCATCTTTC
23159 GTTTC
1 GTTTC
23164 TTCCTTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.29, G:0.09, T:0.57
Consensus pattern (15 bp):
GTTTCCTCATCTTTC
Found at i:24712 original size:20 final size:20
Alignment explanation
Indices: 24687--24737 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 20
24677 TCCATGCATT
*
24687 GATGCACTCCTTAATGTATC
1 GATGCACCCCTTAATGTATC
24707 GATGCACCACCCCTTAATGTATC
1 GATG---CACCCCTTAATGTATC
24730 GATGCACC
1 GATGCACC
24738 TTTAAAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 8 0.30
23 19 0.70
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (20 bp):
GATGCACCCCTTAATGTATC
Found at i:25831 original size:20 final size:21
Alignment explanation
Indices: 25792--25831 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
25782 GAAGCTCTAA
* *
25792 GATCATCAATTTTCTTTTGAT
1 GATCATCAATTTACTCTTGAT
25813 GATCATC-ATTTACTCTTGA
1 GATCATCAATTTACTCTTGA
25832 AAGTAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.47
Consensus pattern (21 bp):
GATCATCAATTTACTCTTGAT
Found at i:25987 original size:20 final size:21
Alignment explanation
Indices: 25944--25987 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
25934 ATTATTTTCG
* *
25944 TTTTTCAATTTTGAAATATCA
1 TTTTTCAATTTTGAAAAATAA
*
25965 TTTTTCTATTTT-AAAAATAA
1 TTTTTCAATTTTGAAAAATAA
25985 TTT
1 TTT
25988 CTCATAATCC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (21 bp):
TTTTTCAATTTTGAAAAATAA
Found at i:28004 original size:65 final size:64
Alignment explanation
Indices: 27911--28065 Score: 204
Period size: 65 Copynumber: 2.4 Consensus size: 64
27901 ACACTTGGGT
* * * * * * *
27911 TGCATCGATACACTAATTACATTCGATGTTTCAA-AAGAGTCAGGAGTGCATCGATGCATAGTAT
1 TGCATCGGTACACAAAATGCATTCGATGTTTCAATAA-AATCAAGAGTGCATCGATGCAT-GGAT
27975 G
64 G
* *
27976 TGCATCGGTACATAAAATGCATTCGATGTTTCAATAAAATCAAGAGTGCGTCGATGCATGGATG
1 TGCATCGGTACACAAAATGCATTCGATGTTTCAATAAAATCAAGAGTGCATCGATGCATGGATG
28040 TGCATCGGTACACAAAATGCATTCGA
1 TGCATCGGTACACAAAATGCATTCGA
28066 ATTAGGGTGT
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 29 0.37
65 48 0.61
66 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (64 bp):
TGCATCGGTACACAAAATGCATTCGATGTTTCAATAAAATCAAGAGTGCATCGATGCATGGATG
Found at i:30743 original size:50 final size:50
Alignment explanation
Indices: 30683--30799 Score: 137
Period size: 51 Copynumber: 2.3 Consensus size: 50
30673 AAAATATTAA
* * * * *
30683 GAGATATACATACTTACATAGATGTAAGTATG-TGTTTATTTTTAGGTTTG
1 GAGATGTACATACTTACACAGATGTAA-AATGATGTTTATATTTAGGTTGG
* *
30733 GAGATGTACATACTTACACGGGTGTAAAATGTATGTTTATATTTAGGTTGG
1 GAGATGTACATACTTACACAGATGTAAAATG-ATGTTTATATTTAGGTTGG
*
30784 GAGATGTACAAACTTA
1 GAGATGTACATACTTA
30800 AACCGGTGTA
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
49 3 0.05
50 23 0.40
51 31 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (50 bp):
GAGATGTACATACTTACACAGATGTAAAATGATGTTTATATTTAGGTTGG
Found at i:31549 original size:20 final size:18
Alignment explanation
Indices: 31524--31575 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
31514 ATTAATCAAA
31524 AAAAATTCTTAGAACTAAAT
1 AAAAATTCTTAGAA--AAAT
*
31544 AAAAATTATTA-AAAAAT
1 AAAAATTCTTAGAAAAAT
31561 AAAAATTCTTGAGAA
1 AAAAATTCTT-AGAA
31576 GGGTATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 13 0.46
18 1 0.04
19 4 0.14
20 10 0.36
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
AAAAATTCTTAGAAAAAT
Found at i:37275 original size:16 final size:16
Alignment explanation
Indices: 37250--37293 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
37240 TAATAAATAA
37250 ACGAACATAAACAAAC
1 ACGAACATAAACAAAC
* **
37266 ACGAATATAAATGAAC
1 ACGAACATAAACAAAC
37282 ACGAACATAAAC
1 ACGAACATAAAC
37294 GTTGGATACA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.59, C:0.20, G:0.09, T:0.11
Consensus pattern (16 bp):
ACGAACATAAACAAAC
Found at i:38402 original size:14 final size:14
Alignment explanation
Indices: 38385--38417 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
38375 GAATGAACAT
38385 AAACGAACATAACC
1 AAACGAACATAACC
38399 AAACGAACATAACC
1 AAACGAACATAACC
*
38413 GAACG
1 AAACG
38418 TTCACGAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.55, C:0.27, G:0.12, T:0.06
Consensus pattern (14 bp):
AAACGAACATAACC
Found at i:41602 original size:16 final size:16
Alignment explanation
Indices: 41581--41613 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
41571 CTCATCACTT
41581 GTTTGATTAATAATAA
1 GTTTGATTAATAATAA
41597 GTTTGATTAATAATAA
1 GTTTGATTAATAATAA
41613 G
1 G
41614 CTATCTCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (16 bp):
GTTTGATTAATAATAA
Found at i:46945 original size:23 final size:23
Alignment explanation
Indices: 46919--46966 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
46909 ATAAAGTACA
*
46919 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
46942 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
46965 AT
1 AT
46967 TGACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:47473 original size:23 final size:23
Alignment explanation
Indices: 47438--47510 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
47428 ATACTTTACA
* *
47438 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
47461 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
47484 ATATTAACGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
47507 ATAT
1 ATAT
47511 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:47511 original size:23 final size:23
Alignment explanation
Indices: 47447--47511 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
47437 AATATAAGCA
*
47447 CTACCTATTACATTATATAAACG
1 CTACCTATTACATTATATTAACG
47470 CTACCTATTACATTATATTAACG
1 CTACCTATTACATTATATTAACG
*
47493 CTACCTATTACATCATATT
1 CTACCTATTACATTATATT
47512 TTTACCTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.38
Consensus pattern (23 bp):
CTACCTATTACATTATATTAACG
Found at i:47963 original size:23 final size:23
Alignment explanation
Indices: 47928--48000 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
47918 ATAATTTACA
*
47928 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
47951 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
47974 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
47997 ATAT
1 ATAT
48001 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:48444 original size:23 final size:23
Alignment explanation
Indices: 48418--48490 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
48408 ATATTTTACA
*
48418 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
48441 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
48464 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
48487 ATAT
1 ATAT
48491 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:48609 original size:491 final size:490
Alignment explanation
Indices: 47040--48838 Score: 3353
Period size: 491 Copynumber: 3.7 Consensus size: 490
47030 TTATAATATG
*
47040 TTGAAAGTGTCTATATTTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATA-TTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
* *
47105 TTCAA--ATTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTTATTTAATAATTTCATTTGC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
*
47168 ACAAAAAATTATTTTATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
47233 TTAACCAAAGATAATAATAAATATGT-A-ATATATGTTTATTGTTTTTAATTTAATAAT-ATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
47295 TACCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
47359 TCAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
325 TCAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
*
47424 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATT
390 ATAGATAATTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATA-T
47489 AA-CGCTACCTATTACATCATATTTTTACCTATTATA
454 AAGCGCTACCTATTACATCATATTTTTACCTATTATA
47525 TTGAAAGTGTCTATATTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATATTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
47590 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
47655 CAAAAAATTATTTGATTGTTTTGATATTTTAT-AAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
47719 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
47784 ACCGTAACGTAAAATATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
47849 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAATG
326 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTAT-AAAAAGG
47914 ATAGATAATTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATA
390 ATAGATAATTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATA
47979 AGCGCTACCTATTACATCATATTTTTACCTATTATA
455 AGCGCTACCTATTACATCATATTTTTACCTATTATA
* *
48015 TTGAAAGTGTCTATAATTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTGTGTT
1 TTGAAAGTGTCTATATTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
48080 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
48145 CAAAAAATTATTTTATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
48210 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
48275 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
48340 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATTGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
48405 TAGATATTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATAATTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
48470 GCGCTACCTATTACATCATATTTTTACCTATTATA
456 GCGCTACCTATTACATCATATTTTTACCTATTATA
* * * *
48505 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAATTATGTAATTTATGTT
1 TTGAAAGTGTCTATATTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
48570 TCAATTTGTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
66 TCAATTT-TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
48635 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
48700 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
*
48765 TACCGTAACGTAAAAAATAAATCATTAGACACCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
48830 TCAAAAGAT
325 TCAAAAGAT
48839 GTACATACCT
Statistics
Matches: 1283, Mismatches: 21, Indels: 14
0.97 0.02 0.01
Matches are distributed among these distances:
484 53 0.04
485 72 0.06
486 89 0.07
487 30 0.02
488 16 0.01
489 113 0.09
490 434 0.34
491 476 0.37
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (490 bp):
TTGAAAGTGTCTATATTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
TAGATAATTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
GCGCTACCTATTACATCATATTTTTACCTATTATA
Found at i:51644 original size:183 final size:183
Alignment explanation
Indices: 51333--52456 Score: 1869
Period size: 183 Copynumber: 6.1 Consensus size: 183
51323 TACTTAAAAT
* *
51333 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAAGACCTATTCGCTCATAAAAACGGTAT
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGT-AGACCTATTCGCTCATAAAACCGGTAT
* * *
51398 ATTTATATCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATTTGTAAATG
65 ATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATG
*
51463 TCGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAG
130 TCGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
51517 TACCGACACAATATTAGAAAGTGTCGATATAGGTTATAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
*
51582 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTTCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
*
51647 CGACACTTTTTTAAATGGTATCGATACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
51700 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACATATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
51765 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
*
51830 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATGAAG
131 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
** *
51883 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGATATATTCGCTCATAAAAACGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* *
51948 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATTTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
* *
52013 CGACACTTTTTGACAAT-GTTTCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
52066 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* *
52131 TTTATACCGGTTATATTACAAAATTATTTATTACATTATAAATCTGGGTTCCGATGTGTAAATAT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
*
52196 CGACACTTTTTTAAATGATATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
* * * * *
52249 TTCCGACACAATATTAAAAAGTGTCGATATAGGTTATAGACCTATTCGTTCATAAAACCGATATA
1 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* * * *
52314 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTAGGTTCCGATGTTTTTTCAA
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATG---TGTAAA
*
52379 --TCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAG
128 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
* *
52433 TACAGACACAATATTAAAAAGTGT
1 TACCGACACAATATTAGAAAGTGT
52457 GAAAACTTTG
Statistics
Matches: 889, Mismatches: 45, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
182 6 0.01
183 767 0.86
184 112 0.13
186 4 0.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (183 bp):
TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
TTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
Found at i:53666 original size:3 final size:3
Alignment explanation
Indices: 53658--53726 Score: 66
Period size: 3 Copynumber: 23.0 Consensus size: 3
53648 ACTTGTTTGG
* * * * * *
53658 ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GTC AGC TTC ATC GTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* *
53706 ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC
53727 GTCAGCTTCA
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:53675 original size:12 final size:12
Alignment explanation
Indices: 53658--53730 Score: 83
Period size: 12 Copynumber: 6.1 Consensus size: 12
53648 ACTTGTTTGG
*
53658 ATCATCATCATC
1 ATCATCATCGTC
* *
53670 ATCATCGTCATC
1 ATCATCATCGTC
*
53682 ATCTTCATCGTC
1 ATCATCATCGTC
* *
53694 AGCTTCATCGTC
1 ATCATCATCGTC
53706 ATCATCATCGTC
1 ATCATCATCGTC
*
53718 ATCTTCATCGTC
1 ATCATCATCGTC
53730 A
1 A
53731 GCTTCATCTT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 53 1.00
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.36
Consensus pattern (12 bp):
ATCATCATCGTC
Found at i:53709 original size:36 final size:36
Alignment explanation
Indices: 53662--53743 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
53652 GTTTGGATCA
*
53662 TCATCATCATCATCGTCATCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
* *
53698 TCATCGTCATCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
*
53734 TCATCTTCAT
1 TCATCATCAT
53744 TGACCGCTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.21, C:0.33, G:0.09, T:0.38
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGTCAGCT
Found at i:53735 original size:12 final size:12
Alignment explanation
Indices: 53684--53738 Score: 83
Period size: 12 Copynumber: 4.6 Consensus size: 12
53674 TCGTCATCAT
53684 CTTCATCGTCAG
1 CTTCATCGTCAG
*
53696 CTTCATCGTCAT
1 CTTCATCGTCAG
* *
53708 CATCATCGTCAT
1 CTTCATCGTCAG
53720 CTTCATCGTCAG
1 CTTCATCGTCAG
53732 CTTCATC
1 CTTCATC
53739 TTCATTGACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.18, C:0.35, G:0.11, T:0.36
Consensus pattern (12 bp):
CTTCATCGTCAG
Found at i:53741 original size:6 final size:6
Alignment explanation
Indices: 53680--53743 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
53670 ATCATCGTCA
* * * * * *
53680 TCATCT TCATCG TCAGCT TCATCG TCATCA TCATCG TCATCT TCATCG
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
*
53728 TCAGCT TCATCT TCAT
1 TCATCT TCATCT TCAT
53744 TGACCGCTTG
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.39
Consensus pattern (6 bp):
TCATCT
Found at i:55554 original size:200 final size:200
Alignment explanation
Indices: 55207--56381 Score: 2117
Period size: 200 Copynumber: 5.9 Consensus size: 200
55197 TTTAAATTAG
* * * * *
55207 TATCGACA-AAACATTAAACAGTGTCGATACA-TATTATATACCA-ATTCTCTCATAAAATCGGT
1 TATCGACACAAAC-TAAAAAAGTGTCGACACATTATT-TAGA-CATATTCTCTCATAAAACCGGT
*
55269 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTAGTTTTCGATGTTTTTG
63 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTG
* *
55334 GGATCGACACTTTCTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCATTCTGG
128 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
55399 ACCAAAAA
193 ACCAAAAA
*
55407 TATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
**
55472 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTTTATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
55537 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
55602 AAAAA
196 AAAAA
55607 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
55672 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATG-TTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
55736 TCGACAC-TTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
55800 AAAAA
196 AAAAA
55805 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
55870 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTCCGATATTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
55935 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCTATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
56000 AAAAA
196 AAAAA
56005 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
56070 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
56135 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
56200 AAAAA
196 AAAAA
* *
56205 TATCGACACAAACTAAAAAAATGTCGACACATTATTTAGACATATTCTCTCATAAAACTGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
56270 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGAAGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
56335 TCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTT
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
56382 GGCCATATTG
Statistics
Matches: 946, Mismatches: 24, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
198 180 0.19
199 32 0.03
200 726 0.77
201 8 0.01
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (200 bp):
TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
AAAAA
Found at i:55945 original size:398 final size:399
Alignment explanation
Indices: 55207--56381 Score: 2108
Period size: 398 Copynumber: 2.9 Consensus size: 399
55197 TTTAAATTAG
* * * * *
55207 TATCGACA-AAACATTAAACAGTGTCGATACA-TATTATATACCA-ATTCTCTCATAAAATCGGT
1 TATCGACACAAAC-TAAAAAAGTGTCGACACATTATT-TAGA-CATATTCTCTCATAAAACCGGT
*
55269 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTAGTTTTCGATGTTTTTG
63 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTG
*
55334 GGATCGACACTTTCTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCATTCTGG
128 GGATCGACACTTT-TATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGG
*
55399 ACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTAGACATATTCTCTCATAAAA
192 ACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAA
** *
55464 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTTTATGT
257 CCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATAT
*
55529 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCATGTTTTCCATTCAT
322 TTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCAT
55594 TCTGGACCAAAAA
387 TCTGGACCAAAAA
55607 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
55672 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATG-TTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
55736 TCGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
131 TCGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
55801 AAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
*
55866 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTCCGATATTTTT
261 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATATTTTT
*
55931 GGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCTATTCATTCTG
326 GGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTG
55996 GACCAAAAA
391 GACCAAAAA
56005 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
56070 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
56135 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACAC-TTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
* *
56200 AAAAATATCGACACAAACTAAAAAAATGTCGACACATTATTTAGACATATTCTCTCATAAAACTG
195 AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
56265 GTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGA-AGTTT
260 GTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATA-TTT
*
56329 TTGGGATCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCCTGTT
324 TTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
56382 GGCCATATTG
Statistics
Matches: 751, Mismatches: 18, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
398 372 0.50
399 36 0.05
400 335 0.45
401 8 0.01
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (399 bp):
TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
TCGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
AAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATATTTTT
GGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTG
GACCAAAAA
Found at i:58355 original size:33 final size:33
Alignment explanation
Indices: 58318--58383 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
58308 CATCTTAATA
*
58318 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
58351 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
58384 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:58442 original size:21 final size:21
Alignment explanation
Indices: 58417--58481 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
58407 CCCCTTATGC
* *
58417 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
58438 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
58459 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
58480 CT
1 CT
58482 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:60533 original size:24 final size:24
Alignment explanation
Indices: 60496--60548 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
60486 CCGTTCTATC
60496 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
60520 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
60544 TATTT
1 TATTT
60549 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:60747 original size:19 final size:19
Alignment explanation
Indices: 60692--60747 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
60682 ATCAGGTATC
*
60692 ATTTTACCGGTTTTATCAT
1 ATTTTACCTGTTTTATCAT
*
60711 -TTTGATACATGTTTTATCAT
1 ATTT--TACCTGTTTTATCAT
*
60731 ATTTTACCTGTTATATC
1 ATTTTACCTGTTTTATC
60748 GTTGTGGATC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
18 3 0.10
19 11 0.37
20 13 0.43
21 3 0.10
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.54
Consensus pattern (19 bp):
ATTTTACCTGTTTTATCAT
Found at i:60900 original size:20 final size:20
Alignment explanation
Indices: 60873--60919 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
60863 TCCGGTAACG
60873 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
60892 TTCTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
60913 TTTTACC
1 TTTTACC
60920 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.19, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:61118 original size:184 final size:179
Alignment explanation
Indices: 60660--61133 Score: 639
Period size: 184 Copynumber: 2.6 Consensus size: 179
60650 CGTACTTACG
* * * *
60660 AAAGTATCGACACTTTCAATATATCAGGTATCATTTTACCGGTTTTATCATTTTGATACATGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCA-TTTCATAC-TGTTT
* *
60725 TATCATATTTTACCTGTTATATCGTTGTGGATCGATATA-TTTTTTTAAAGTATCGACACATTAT
64 TATCATATTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTTTAAAGTATCGACACATTAT
60789 AGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
129 AGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
* *
60840 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTCTTACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCA-TTTCATA-CTGTTT
* *
60905 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTTTAAAAGTATCGACACTTT
64 TATCATA-TTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTTT-AAAGTATCGACACATT
* *
60970 ATAGGAC-TTAAAACTGCTTT-TCTTTTAAATTCACGAAGTGTCGATCCTTATATT
127 ATAGG-CGCTAAAACTG-TTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
* * * * * *
61024 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTATCGGTTTTATCATTTCAATACTGATTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTC-ATACTG-TTT
* *
61089 TGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
64 TATCATA-TTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
61134 AATTTGGATC
Statistics
Matches: 261, Mismatches: 24, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
180 64 0.25
181 30 0.11
182 7 0.03
183 65 0.25
184 95 0.36
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (179 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTCATACTGTTTTA
TCATATTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTTTAAAGTATCGACACATTATAG
GCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
Found at i:65168 original size:60 final size:59
Alignment explanation
Indices: 65056--65191 Score: 148
Period size: 60 Copynumber: 2.3 Consensus size: 59
65046 AACAGTTTGG
* * * * *
65056 GGACCAATTTAGAAAGAAGTCATAATTTAGGGATGGAATTAGAATGTCCAAAAGCTTAA
1 GGACAAATTTAGAATGAAGTCATAATTTAAGGATGAAATTAGAATATCCAAAAGCTTAA
* * * *
65115 GGACTAATTTAGAATGAGAGTCATAGTTTAAGGATGAAATT-GAAATATTCAAAAGTTTAA
1 GGACAAATTTAGAATGA-AGTCATAATTTAAGGATGAAATTAG-AATATCCAAAAGCTTAA
* *
65175 AGACAAATTTAAAATGA
1 GGACAAATTTAGAATGA
65192 TGATTATATC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
59 16 0.25
60 48 0.75
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (59 bp):
GGACAAATTTAGAATGAAGTCATAATTTAAGGATGAAATTAGAATATCCAAAAGCTTAA
Found at i:72473 original size:64 final size:62
Alignment explanation
Indices: 72368--72524 Score: 165
Period size: 64 Copynumber: 2.5 Consensus size: 62
72358 TAATGAAGGT
* * * **
72368 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAATGCATTCGATG-TTGTATTATTATAGGG
1 ATGCATCGATGCA-TACTAATGCATCGATGCATAAAATGCATTCGATGTTTCTATT-TTA-AAAG
* *
72432 ATGCATCGATGCATGACTTATGCATCGATGCACT-AATTGCATTCGATGTTTCTATTTTAAAAG
1 ATGCATCGATGCAT-ACTAATGCATCGATGCA-TAAAATGCATTCGATGTTTCTATTTTAAAAG
*
72495 AGTGCATCGATGCATTACCAATGCATCGAT
1 A-TGCATCGATGCA-TACTAATGCATCGAT
72525 ACACCTTCAA
Statistics
Matches: 80, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
63 4 0.05
64 68 0.85
65 8 0.10
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (62 bp):
ATGCATCGATGCATACTAATGCATCGATGCATAAAATGCATTCGATGTTTCTATTTTAAAAG
Found at i:75995 original size:149 final size:148
Alignment explanation
Indices: 75756--76058 Score: 482
Period size: 149 Copynumber: 2.0 Consensus size: 148
75746 CCGAAGTGCA
* *
75756 CGTAGAATTGCACCGTAGTGCCCTATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
* * * * * *
75821 CATATACATATACTAGAGATCAAGTATGTGTCTTATAAGACTTCACACATGTTCCACATAATATA
66 CATATACATATACTAGAGACCAAGTATGTGCCTCA-AAGACCTCACAAATGTTCCAAATAATATA
*
75886 TATATATCCCGAAGGACCG
130 CATATATCCCGAAGGACCG
75905 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
*
75970 CATATACATATACTA-AGGACCAAGTATGTGCCTCAAAGACCTCATAAATGTTCCAAATAATATA
66 CATATACATATACTAGA-GACCAAGTATGTGCCTCAAAGACCTCACAAATGTTCCAAATAATATA
*
76034 CATATGTCCCGAAGGACCG
130 CATATATCCCGAAGGACCG
76053 CGTAGA
1 CGTAGA
76059 CCCTCGACTC
Statistics
Matches: 142, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
148 49 0.35
149 93 0.65
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (148 bp):
CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAGAAT
CATATACATATACTAGAGACCAAGTATGTGCCTCAAAGACCTCACAAATGTTCCAAATAATATAC
ATATATCCCGAAGGACCG
Found at i:77513 original size:64 final size:62
Alignment explanation
Indices: 77408--77564 Score: 165
Period size: 64 Copynumber: 2.5 Consensus size: 62
77398 TAATGAAGGT
* * * **
77408 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAATGCATTCGATG-TTGTATTATTATAGGG
1 ATGCATCGATGCA-TACTAATGCATCGATGCATAAAATGCATTCGATGTTTCTATT-TTA-AAAG
* *
77472 ATGCATCGATGCATGACTTATGCATCGATGCACT-AATTGCATTCGATGTTTCTATTTTAAAAG
1 ATGCATCGATGCAT-ACTAATGCATCGATGCA-TAAAATGCATTCGATGTTTCTATTTTAAAAG
*
77535 AGTGCATCGATGCATTACCAATGCATCGAT
1 A-TGCATCGATGCA-TACTAATGCATCGAT
77565 ACACCTCAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
63 4 0.05
64 68 0.85
65 8 0.10
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (62 bp):
ATGCATCGATGCATACTAATGCATCGATGCATAAAATGCATTCGATGTTTCTATTTTAAAAG
Found at i:84413 original size:38 final size:39
Alignment explanation
Indices: 84351--84474 Score: 151
Period size: 39 Copynumber: 3.2 Consensus size: 39
84341 TCTATAACAA
* *
84351 GTTGCAACCTAAAATTTTGGTTTCTATATGAAAAATCAT
1 GTTGCAACCTAAAAATTTGGTTTCTATATAAAAAATCAT
* * *
84390 GTTGAAACC-AAAAATTTGGTTTCTATGTAAAAAATTAT
1 GTTGCAACCTAAAAATTTGGTTTCTATATAAAAAATCAT
* * * *
84428 GTTGCAACCTAAAAATCTGGTTTCTATATTAAAGATCAG
1 GTTGCAACCTAAAAATTTGGTTTCTATATAAAAAATCAT
*
84467 GTTACAAC
1 GTTGCAAC
84475 ATAGAAACTG
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 33 0.46
39 38 0.54
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (39 bp):
GTTGCAACCTAAAAATTTGGTTTCTATATAAAAAATCAT
Found at i:91707 original size:38 final size:39
Alignment explanation
Indices: 91649--91839 Score: 218
Period size: 38 Copynumber: 5.1 Consensus size: 39
91639 TTTCAAAACT
* * * *
91649 AAAATCTAGTTTCTACATGAAAAAGCAGGTTGTAACCTA
1 AAAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
*
91688 AAAATCTGGTTT-TATATG-AAAATCAGGTTGAAACC-A
1 AAAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
* *
91724 AAAATCTGGTTTCTATGTGAAATATCAGGTTGCAACCT-
1 AAAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
* *
91762 AAAATCTGGTTTC--TAT-AAAACTCAGTTTGCAACCT-
1 AAAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
* * *
91797 AAAATTTGATTTCTATATGAAATATCAGGTTGCAACCTA
1 AAAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
91836 AAAA
1 AAAA
91840 CGTTTTTCTG
Statistics
Matches: 129, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
35 27 0.21
36 15 0.12
37 23 0.18
38 49 0.38
39 15 0.12
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (39 bp):
AAAATCTGGTTTCTATATGAAAAATCAGGTTGCAACCTA
Found at i:91753 original size:75 final size:74
Alignment explanation
Indices: 91649--91839 Score: 242
Period size: 73 Copynumber: 2.6 Consensus size: 74
91639 TTTCAAAACT
* * * * *
91649 AAAATCTAGTTTCTACATGAAAAAGCAGGTTGTAACCTAAAAATCTGGTTT-TATATGAAAATCA
1 AAAATCTGGTTTCTATATGAAATATCAGGTTGCAACCTAAAAATCTGGTTTCTATA--AAAATCA
91713 GGTTGAAACCA
64 GGTTGAAACCA
* * *
91724 AAAATCTGGTTTCTATGTGAAATATCAGGTTGCAACCT-AAAATCTGGTTTCTATAAAACTCAGT
1 AAAATCTGGTTTCTATATGAAATATCAGGTTGCAACCTAAAAATCTGGTTTCTATAAAAATCAGG
* *
91788 TTGCAACCT
66 TTGAAACCA
* *
91797 AAAATTTGATTTCTATATGAAATATCAGGTTGCAACCTAAAAA
1 AAAATCTGGTTTCTATATGAAATATCAGGTTGCAACCTAAAAA
91840 CGTTTTTCTG
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
73 49 0.49
74 16 0.16
75 36 0.36
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (74 bp):
AAAATCTGGTTTCTATATGAAATATCAGGTTGCAACCTAAAAATCTGGTTTCTATAAAAATCAGG
TTGAAACCA
Done.