Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005153.1 Hibiscus syriacus cultivar Beakdansim tig00011619_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97788

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4120--4218
44
2.2
44
87
0
126
36
22
13
28
1.91
4291--4405
43
2.7
43
74
9
108
38
27
13
20
1.90
7583--7614
15
2.0
17
88
11
50
46
3
12
37
1.57
12894--12931
9
4.1
9
86
13
51
73
2
2
21
1.07
12894--12931
17
2.1
19
90
9
62
73
2
2
21
1.07
22890--22977
19
4.5
19
80
8
113
19
20
20
39
1.92
30641--31375
39
19.1
39
86
2
885
36
15
18
29
1.92
31144--31207
32
2.0
32
87
0
92
39
20
10
29
1.87
31380--31709
76
4.3
76
83
4
355
41
13
13
31
1.84
31477--31604
40
3.2
40
71
4
134
35
15
13
35
1.87
45623--45661
19
2.0
20
90
5
62
5
25
0
69
1.09
50495--50543
25
2.0
25
100
0
98
59
16
12
12
1.62
53074--53151
38
2.1
38
85
7
106
32
3
14
50
1.61
56084--56183
35
2.7
35
86
6
119
38
15
16
31
1.89
56660--56705
2
23.0
2
91
8
76
47
2
0
50
1.13
56701--56779
25
3.2
24
67
12
70
30
10
3
55
1.51
56706--56812
49
2.1
50
96
3
198
28
11
4
56
1.54
56939--56972
16
2.1
16
88
0
50
32
5
0
61
1.20
56953--57002
21
2.4
22
80
10
59
28
4
2
66
1.21
56988--57021
9
3.9
9
88
7
52
41
0
0
58
0.98
60334--60373
18
2.2
18
86
8
55
80
2
17
0
0.83
60368--60401
14
2.4
14
90
5
50
79
11
8
0
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61021--61071
22
2.3
22
96
0
93
35
27
11
25
1.91
61935--62035
37
2.8
36
90
3
157
25
24
12
36
1.91
61949--62406
102
4.5
102
93
0
772
30
20
12
36
1.90
62153--62239
37
2.4
37
88
1
122
25
20
13
40
1.89
62313--62471
65
2.4
65
95
0
291
31
20
11
35
1.89
62973--63309
160
2.1
160
95
0
602
32
25
21
20
1.97
63133--63634
106
4.9
104
80
6
513
32
23
21
22
1.98
63132--63634
206
2.5
201
82
4
612
32
24
21
22
1.98
64095--64194
35
2.7
35
86
6
119
38
15
16
31
1.89
64710--64820
51
2.2
51
98
0
213
28
10
4
55
1.54
64949--64982
16
2.1
16
88
0
50
32
5
0
61
1.20
64963--65012
21
2.4
22
80
10
59
28
4
2
66
1.21
80059--80092
17
1.9
17
88
5
50
61
14
2
20
1.46
81261--81587
166
2.0
164
87
1
465
32
16
12
38
1.87
83176--83288
52
2.2
51
84
4
138
53
7
4
34
1.50
87754--87866
51
2.2
51
87
1
154
49
11
4
34
1.59
88344--88376
9
3.8
9
96
4
59
9
6
24
60
1.49
88963--89149
60
3.1
59
78
8
189
33
18
4
43
1.70
92650--92698
3
16.7
3
85
4
64
65
0
0
34
0.93
92651--92703
26
2.0
26
88
0
79
67
0
1
30
1.01
93050--94239
113
10.6
114
81
9
845
28
18
14
37
1.91
93397--94240
226
3.8
218
92
3
1272
28
19
14
37
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93680--94270
113
5.2
113
88
1
862
29
18
14
37
1.91
94963--95414
114
4.0
114
92
1
717
31
19
15
33
1.93
96107--96186
7
12.0
7
85
10
98
0
15
0
85
0.61
96107--96186
35
2.2
38
91
6
130
0
15
0
85
0.61
96107--96196
42
2.1
42
86
8
121
0
14
1
84
0.68
96109--96199
31
2.7
33
80
14
107
0
14
1
84
0.68
96108--96187
1
80.0
1
72
0
61
0
13
0
86
0.58

Tables:   1

The End!