genome.fa.s5155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005155.1 Hibiscus syriacus cultivar Beakdansim tig00011624_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97605

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7931--7972	21	2.0	21	95	0	75	30	14	7	47	1.71
10564--10720	79	2.0	78	93	3	271	36	12	17	33	1.87
10835--10898	30	2.1	31	82	5	76	40	17	1	40	1.59
15568--15647	28	2.8	29	76	16	87	53	12	15	18	1.72
17438--17476	21	1.9	20	84	5	51	53	20	17	7	1.68
19043--19189	3	49.0	3	83	10	185	65	1	0	31	1.06
19519--19593	39	1.9	39	91	0	123	24	18	38	18	1.93
19383--19737	132	2.7	132	85	4	473	23	17	32	26	1.96
20014--20242	29	7.9	30	70	21	132	46	14	10	27	1.78
19992--20161	92	1.9	88	84	4	223	45	14	11	28	1.80
20108--20242	28	4.8	28	83	13	163	48	16	8	25	1.75
20528--20584	30	1.9	30	85	3	80	43	12	21	22	1.85
20878--21000	35	3.5	35	83	2	149	39	11	18	30	1.86
20967--21188	101	2.2	104	78	12	239	40	9	16	32	1.82
22900--22969	15	4.5	16	77	12	58	4	20	10	65	1.39
23349--23412	22	2.8	23	88	4	103	17	29	20	32	1.95
28364--28458	3	32.0	3	86	2	129	67	2	0	30	1.02
28368--28476	15	6.9	16	78	10	73	67	1	0	29	1.07
28643--28686	11	4.2	11	80	11	56	63	0	34	2	1.07
33734--33795	25	2.7	23	82	9	65	50	1	3	45	1.27
36067--36114	12	4.1	11	87	12	69	68	0	0	31	0.90
36069--36114	3	15.3	3	82	17	60	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36069--36114	24	1.9	24	91	8	76	67	0	0	32	0.91
36401--36633	43	5.4	43	74	14	165	23	18	32	25	1.97
36298--36590	134	2.2	133	86	4	405	23	19	33	24	1.97
36298--36598	131	2.3	132	83	6	385	22	19	33	24	1.97
37048--37130	36	2.3	36	83	6	96	34	8	16	39	1.79
37452--37485	16	2.1	16	88	0	50	29	2	20	47	1.65
39915--39978	23	2.8	22	85	4	83	26	26	26	20	1.99
39994--40211	103	2.1	103	96	0	400	38	24	12	24	1.91
40690--40730	20	2.0	20	90	0	64	9	29	31	29	1.89
46854--46917	23	2.8	22	85	4	83	26	26	26	20	1.99
46933--47149	103	2.1	102	94	0	380	38	23	12	24	1.90
48175--48201	3	9.0	3	100	0	54	66	0	33	0	0.92
48562--48608	23	2.0	23	95	0	85	14	12	21	51	1.76
53204--53233	13	2.4	13	94	5	53	43	0	30	26	1.55
58269--58327	22	2.7	23	94	5	104	55	3	0	40	1.16
58311--58358	23	2.1	24	84	7	64	37	2	8	52	1.44
58288--58346	23	2.6	23	83	5	66	49	3	3	44	1.36
59709--59754	2	23.5	2	95	4	85	47	0	0	52	1.00
60147--60180	18	1.9	17	94	5	59	0	20	0	79	0.73
61194--61254	21	3.0	21	78	7	72	37	19	16	26	1.93
61192--61274	41	2.0	41	81	9	98	37	19	14	28	1.91
62181--62214	12	2.8	12	90	0	50	55	29	0	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62340--62417	24	3.2	24	90	0	120	21	20	20	37	1.95
63217--63339	20	6.2	20	80	3	131	44	20	13	21	1.85
63217--63339	40	3.1	40	81	4	149	44	20	13	21	1.85
63320--63398	40	2.0	40	85	5	106	18	15	20	45	1.85
63336--63423	40	2.2	40	89	0	131	18	14	19	47	1.82
63336--63414	20	4.0	20	89	0	131	17	13	20	48	1.81
64051--64134	40	2.1	40	82	4	98	41	8	22	27	1.82
64080--64167	40	2.2	40	83	4	106	36	9	25	29	1.86
64160--64211	20	2.6	20	81	6	61	21	7	30	40	1.81
65361--65414	24	2.2	24	83	6	65	46	12	0	40	1.42
65744--65826	29	2.9	29	85	0	85	20	37	25	16	1.93
66037--66117	29	2.8	28	85	5	99	14	23	40	20	1.90
66066--66160	32	3.1	32	89	7	135	10	16	47	25	1.79
70309--70342	16	2.1	17	88	5	52	41	17	2	38	1.65
72355--72388	2	17.0	2	100	0	68	50	0	0	50	1.00
89194--89238	3	14.3	3	81	9	54	60	0	0	40	0.97
89194--89238	19	2.4	19	88	0	72	60	0	0	40	0.97
89196--89239	22	2.0	22	95	0	79	56	0	0	43	0.99
89430--89788	131	2.7	131	82	2	414	24	16	32	27	1.96
89868--90098	102	2.3	98	79	5	228	41	12	17	28	1.86
90031--90136	37	3.0	35	84	6	133	37	10	17	33	1.84
90031--90148	36	3.2	36	82	5	139	38	9	17	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91805--91845	21	2.0	21	90	0	64	19	26	21	31	1.97
92205--92248	21	2.1	21	87	4	63	59	4	11	25	1.51
92205--92262	18	3.0	20	78	12	66	53	5	12	29	1.59
93373--93420	19	2.5	20	82	3	62	29	12	6	52	1.63
95060--95117	17	4.0	15	69	24	52	1	20	6	70	1.19

Tables:   1

The End!