Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005156.1 Hibiscus syriacus cultivar Beakdansim tig00011627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77980

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
629--686
30
2.0
30
86
3
82
31
20
6
41
1.79
724--765
3
14.0
3
100
0
84
33
0
0
66
0.92
1559--1589
15
2.0
16
93
6
55
54
0
6
38
1.26
1932--2098
89
1.9
87
91
2
271
42
5
7
44
1.56
2764--2839
34
2.2
35
85
4
109
42
22
0
35
1.54
11273--11298
12
2.2
12
100
0
52
42
15
7
34
1.75
11347--11380
2
17.0
2
100
0
68
50
0
0
50
1.00
13733--14189
100
4.6
100
91
1
693
28
12
19
39
1.89
16455--16515
18
3.5
17
89
10
88
0
11
3
85
0.72
16455--16506
12
4.5
11
92
4
77
0
11
1
86
0.65
16457--16501
6
7.7
6
95
5
83
0
13
0
86
0.57
17675--17707
5
6.8
5
96
3
59
84
0
0
15
0.61
17689--17737
26
1.9
25
84
12
64
75
2
10
12
1.13
23268--23297
13
2.3
13
94
0
51
36
0
3
60
1.14
35014--35112
52
1.9
52
97
0
189
46
12
2
39
1.53
35091--35115
3
8.3
3
100
0
50
68
0
0
32
0.90
39795--39839
21
2.1
21
87
0
63
31
28
24
15
1.96
40625--40747
31
4.0
31
91
2
185
21
20
22
35
1.96
47106--47360
66
3.9
66
84
2
316
25
40
1
31
1.67
48334--48369
15
2.4
15
100
0
72
27
19
0
52
1.46
50184--50216
17
1.9
17
93
0
57
60
0
6
33
1.21
50293--50368
32
2.4
32
86
2
100
25
32
11
30
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52303--52380
31
2.5
31
85
4
104
33
12
26
26
1.93
56195--56339
70
2.1
70
97
0
272
41
11
17
30
1.84
58282--58314
6
5.5
6
92
0
57
18
51
30
0
1.46
58770--58806
17
2.3
17
86
9
51
56
2
0
40
1.13
60429--60496
23
2.9
23
75
2
73
26
14
16
42
1.86
60420--60568
47
3.1
47
80
2
127
21
15
16
46
1.84
60516--60592
24
3.2
24
64
29
65
23
15
15
45
1.84
60489--60608
47
2.6
47
94
0
213
23
15
15
45
1.85
66789--66883
44
2.1
45
94
1
165
29
9
21
40
1.84
72280--72334
25
2.2
25
96
3
103
29
25
18
27
1.98
74908--74941
14
2.4
14
100
0
68
52
5
14
26
1.64
76451--76540
28
3.3
27
76
17
96
75
0
16
7
1.02
76450--76540
31
2.9
31
75
12
80
74
0
17
7
1.04
76493--76543
14
3.6
14
82
17
61
74
0
19
5
1.02
76492--76570
15
5.1
16
72
23
55
73
0
20
6
1.05
76493--76543
15
3.5
15
80
17
63
74
0
19
5
1.02
76493--76554
15
4.3
15
80
13
60
74
0
19
6
1.03
76533--76592
30
1.9
33
86
10
90
71
0
20
8
1.11
76532--76593
11
5.8
11
72
14
58
72
0
19
8
1.09
76493--76628
73
1.9
73
80
9
161
73
0
18
7
1.10

Tables:   1

The End!