genome.fa.s5157.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005157.1 Hibiscus syriacus cultivar Beakdansim tig00011628_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191923

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
886--941	25	2.2	25	100	0	112	30	25	17	26	1.97
5117--5280	14	11.3	14	69	24	51	73	0	18	7	1.11
5124--5237	9	12.0	9	69	24	58	71	0	18	9	1.12
5129--5276	75	2.0	75	81	15	173	72	0	18	8	1.14
6639--6964	165	2.0	166	86	4	462	27	15	25	31	1.96
6639--6964	55	5.9	55	88	4	417	27	15	25	31	1.96
11757--11796	2	20.5	2	89	5	64	50	2	47	0	1.14
11996--12041	2	23.0	2	100	0	92	50	0	0	50	1.00
19293--19346	2	27.0	2	100	0	108	50	0	0	50	1.00
20853--21414	67	8.5	66	85	6	682	41	14	16	27	1.88
21171--21306	37	3.9	36	70	14	104	44	14	14	26	1.84
26747--26784	2	20.0	2	84	10	53	50	0	2	47	1.15
27774--27838	3	21.7	3	96	0	121	64	0	1	33	1.03
31412--31449	19	2.0	19	94	0	67	28	15	28	26	1.96
32911--32973	19	3.3	19	95	0	108	17	26	15	39	1.90
42353--42390	14	2.7	14	84	11	51	21	10	28	39	1.86
42976--43031	16	3.9	14	77	17	53	67	0	12	19	1.22
43006--43035	16	1.9	15	93	6	51	66	0	10	23	1.21
43882--44027	47	3.1	48	84	3	181	36	20	14	28	1.92
44630--44667	19	2.0	19	89	0	58	47	10	0	42	1.38
45197--45242	20	2.2	22	84	7	60	43	21	0	34	1.53
47323--47375	20	2.7	20	78	18	58	26	16	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51560--51647	33	2.7	33	86	6	101	26	13	21	38	1.91
56200--56298	33	3.1	32	87	8	130	24	13	24	38	1.91
56211--56298	33	2.7	33	92	3	144	23	14	25	36	1.93
58863--58922	4	14.2	4	73	16	50	26	5	0	68	1.10
59892--59921	4	7.2	4	96	3	51	26	3	0	70	1.03
60524--60567	22	1.9	23	82	17	56	47	15	20	15	1.82
70125--70645	105	5.0	104	80	9	517	33	26	20	19	1.97
70236--70679	203	2.2	204	87	6	619	34	25	20	19	1.96
72463--72538	4	18.2	4	79	12	82	26	3	0	69	1.05
74686--74731	17	2.8	17	80	3	58	60	0	13	26	1.32
77623--77680	3	19.0	3	85	3	80	34	0	1	63	1.04
79126--79163	12	3.2	12	81	3	51	28	2	2	65	1.19
79280--79506	124	1.8	124	84	1	312	37	9	9	44	1.69
82348--82388	7	5.9	7	83	11	57	14	17	9	58	1.62
87800--87971	74	2.3	75	86	4	231	32	16	21	29	1.95
89270--89343	22	3.4	22	92	0	121	36	8	13	41	1.74
90020--90706	76	9.0	76	96	0	1266	23	22	21	32	1.98
90862--90925	3	21.0	3	87	3	92	34	0	1	64	1.03
95560--95606	20	2.3	20	85	0	67	48	6	8	36	1.59
95829--95876	23	2.1	23	92	0	78	37	14	8	39	1.76
110637--110662	11	2.4	11	100	0	52	15	11	26	46	1.80
111033--111128	43	2.2	43	88	0	138	36	21	10	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112947--112996	23	2.2	23	88	0	73	42	6	10	42	1.63
114819--114856	20	1.9	20	94	0	67	18	15	34	31	1.92
122193--122255	21	2.9	21	80	4	72	26	36	20	15	1.93
127057--127138	23	3.6	23	71	17	73	30	20	24	24	1.99
127056--127157	44	2.3	43	80	11	118	28	20	24	26	1.99
133031--133068	20	1.9	20	88	0	58	18	13	34	34	1.89
134338--134389	21	2.5	21	100	0	104	28	17	17	36	1.92
140154--140216	25	2.6	25	74	2	65	31	0	4	63	1.15
140786--140862	31	2.4	32	91	4	129	20	1	23	54	1.52
141979--142041	33	1.9	33	87	6	92	49	3	6	41	1.44
142112--142144	16	2.1	16	88	11	50	54	0	0	45	0.99
142260--142378	46	2.6	46	85	1	132	57	0	2	39	1.18
142252--142313	18	3.2	18	68	16	52	56	4	1	37	1.30
142288--142339	27	1.9	27	88	7	79	59	1	1	36	1.19
142250--142329	40	2.0	39	87	4	115	58	3	2	35	1.29
142318--142365	19	2.6	18	83	3	60	58	0	4	37	1.18
142276--142378	46	2.3	45	87	1	152	59	0	1	37	1.15
142288--142378	27	3.7	27	68	24	74	58	1	2	38	1.18
145739--145790	3	17.0	3	84	4	50	44	0	0	55	0.99
151249--151280	15	2.1	15	94	0	55	25	18	9	46	1.79
158606--158636	11	2.8	11	100	0	62	90	0	9	0	0.46
159791--160501	83	8.6	83	97	0	1314	28	11	21	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161700--161765	20	3.3	20	64	8	53	43	10	22	22	1.84
161440--162220	113	6.9	113	91	2	1234	37	14	19	28	1.91
162448--162512	15	4.5	15	78	14	57	46	0	0	53	1.00
174715--174751	19	1.9	19	88	0	56	18	24	10	45	1.81
185178--185375	39	5.1	38	84	6	245	31	15	14	38	1.87
185237--185298	19	3.2	19	68	4	52	33	16	12	37	1.87
185182--185375	77	2.5	78	87	0	264	32	15	14	37	1.88
185182--185418	77	3.1	77	82	4	230	32	14	14	38	1.87

Tables:   1

The End!