Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005159.1 Hibiscus syriacus cultivar Beakdansim tig00011632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51299

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5254--5286
15
2.1
16
88
5
50
48
0
3
48
1.17
5722--5767
19
2.6
18
87
12
69
43
2
0
54
1.12
5700--5787
40
2.1
43
87
8
128
42
3
2
52
1.31
5759--5812
26
2.1
26
96
0
99
33
0
1
64
1.04
5722--5825
16
6.3
16
75
11
68
41
1
0
55
1.17
5790--5825
17
2.2
16
90
5
54
44
2
0
52
1.15
7084--7123
14
2.9
14
84
0
62
17
17
10
55
1.69
16689--16753
12
5.4
12
100
0
130
16
33
32
16
1.92
17916--18005
20
4.5
20
94
0
144
21
22
10
46
1.80
20842--20875
2
17.0
2
100
0
68
50
0
0
50
1.00
22144--22457
157
2.0
157
98
0
610
39
15
12
32
1.85
26935--27044
57
1.9
56
82
10
134
34
0
17
48
1.47
29366--29404
15
2.7
14
85
14
53
53
2
0
43
1.14
29366--29404
7
5.4
7
82
17
53
53
2
0
43
1.14
29433--29493
16
3.4
16
68
23
50
40
6
8
44
1.60
29523--29632
11
9.2
11
70
17
60
41
9
3
45
1.53
29527--29584
24
2.4
24
88
0
89
41
5
5
48
1.48
29527--29618
24
3.8
24
78
8
82
42
8
3
45
1.51
29685--29727
15
2.9
15
100
0
86
60
6
0
32
1.23
29684--29726
8
5.6
8
78
10
54
58
6
0
34
1.25
35075--35106
16
2.0
16
100
0
64
43
18
0
37
1.51
35378--35433
26
2.2
25
87
6
78
39
12
14
33
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35618--35658
16
2.5
17
80
11
50
68
0
2
29
1.03
38712--38743
16
2.0
16
93
0
55
40
0
15
43
1.47
38771--38815
20
2.2
21
84
11
58
37
4
13
44
1.64
38950--39001
15
3.1
15
73
23
50
50
7
0
42
1.31
38959--38996
20
2.0
20
94
5
69
55
7
0
36
1.29
39426--39544
46
2.4
50
86
8
165
52
10
0
36
1.35
39426--39591
50
3.4
50
80
11
168
53
12
0
34
1.38
39502--39564
28
2.2
30
91
5
103
58
11
0
30
1.32
39541--39589
21
2.3
21
89
3
80
55
16
0
28
1.42
39537--39592
21
2.6
21
78
16
69
57
14
0
28
1.38
39630--39663
17
1.9
18
88
5
52
55
2
0
41
1.15
39940--40032
40
2.3
40
85
1
125
11
21
32
34
1.90
40852--40964
60
1.9
60
81
3
138
38
15
14
31
1.87
42993--43037
23
2.0
23
86
4
65
42
0
20
37
1.52
47773--47813
20
2.0
21
90
4
66
41
4
9
43
1.59
48236--48273
16
2.4
16
86
8
51
36
7
18
36
1.80
48407--48494
30
2.9
30
83
12
110
27
18
19
35
1.95

Tables:   1

The End!