Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000516.1 Hibiscus syriacus cultivar Beakdansim tig00000983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102194
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:8846 original size:30 final size:31
Alignment explanation
Indices: 8812--8870 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
8802 TTTATTACTA
*
8812 TATATTATTATT-GTTAGT-TGTGTTTAATGC
1 TATATTATTATTAATTA-TATGTGTTTAATGC
8842 TATATTATTATTAATTATATGTGTTTAAT
1 TATATTATTATTAATTATATGTGTTTAAT
8871 ATTACCTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.58
Consensus pattern (31 bp):
TATATTATTATTAATTATATGTGTTTAATGC
Found at i:15649 original size:42 final size:41
Alignment explanation
Indices: 15602--15695 Score: 107
Period size: 42 Copynumber: 2.3 Consensus size: 41
15592 TAGTAAGTCC
* * *
15602 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGATTAAATCT
1 TTCGGGCCATCAGTAAGTCTTTCGAGCAAGATGA-TAAATCA
* * * *
15644 TTCGGGTCATCTGTATGTCTTTCGAGCAAGATGATAAGTCA
1 TTCGGGCCATCAGTAAGTCTTTCGAGCAAGATGATAAATCA
*
15685 TTCAGGCCATC
1 TTCGGGCCATC
15696 TATAAGACCT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
41 14 0.33
42 29 0.67
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (41 bp):
TTCGGGCCATCAGTAAGTCTTTCGAGCAAGATGATAAATCA
Found at i:15715 original size:20 final size:20
Alignment explanation
Indices: 15692--15730 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
15682 TCATTCAGGC
15692 CATCTATAAGACCTTCGGGT
1 CATCTATAAGACCTTCGGGT
15712 CATCTATAAGACCTTCGGG
1 CATCTATAAGACCTTCGGG
15731 CATGATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (20 bp):
CATCTATAAGACCTTCGGGT
Found at i:15862 original size:278 final size:277
Alignment explanation
Indices: 15420--15989 Score: 894
Period size: 278 Copynumber: 2.1 Consensus size: 277
15410 GAGCAAGATG
* * *
15420 ATAAGTCCTTCGGGCCATTTATAAGACCTTCGGGCAGGATGTTTCCACAAGATTTTCAAAAAAAT
1 ATAAGACCTTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTCCACAAGATTTTCAAAAAAAC
* *
15485 GAGAAAGCGATTTCCAAAGTTTCTCATTTAGTATTTTCAGAAAATGATTTTTGAAAAGTAAGAAA
66 GAGAAAACGATTTCCAAAGTTTCTCATTCAGTATTTTCAGAAAATGATTTTTGAAAAGTAAGAAA
*
15550 GCGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCAAAATTAGTAAGTCCTTCGGGCCATCAG
131 ACGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCAAAATTAGTAAGTCCTTCGGGCCATCAG
* * * *
15615 TAAGTCTTTTGAGCATGATGATTAAATCTTTCGGGTCATCTGT-ATGTCTTTCGAGCAAGATGAT
196 TAAGTCTTTCGAGCAAGATGATTAAATCCTTCGAGTCATCTGTCA-GTCTTTCGAGCAAGATGAT
15679 AAGTCATTCAGGCCATCT
260 AAGTCATTCAGGCCATCT
* * *
15697 ATAAGACCTTCGGGTCATCTATAAGACCTTCGGGCATGATGTTTTCACATA-ATTTT-AAAAAAA
1 ATAAGACCTTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTCCACA-AGATTTTCAAAAAAA
*
15760 CGAGAAAACGATTTCCAAAGTTTCTCATTCAGTATTTTCATAAAATGAAATTTTTGAAAAGTAAG
65 CGAGAAAACGATTTCCAAAGTTTCTCATTCAGTATTTTCAGAAAATG--ATTTTTGAAAAGTAAG
* * * * *
15825 AAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGTCAT
128 AAAACGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCAAAATTAGTAAGTCCTTCGGGCCAT
15890 CAGTAAGTCTTTCGAGCAAGATGATTAAATCCTTCGAGTCATCTGTCAGTCTTTCGAGCAAGATG
193 CAGTAAGTCTTTCGAGCAAGATGATTAAATCCTTCGAGTCATCTGTCAGTCTTTCGAGCAAGATG
*
15955 ATAAGTCATTCGGGCCATCT
258 ATAAGTCATTCAGGCCATCT
*
15975 ATAAGATCTTCGGGC
1 ATAAGACCTTCGGGC
15990 AAGATGCTTT
Statistics
Matches: 267, Mismatches: 22, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
276 50 0.19
277 49 0.18
278 167 0.63
279 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (277 bp):
ATAAGACCTTCGGGCCATCTATAAGACCTTCGGGCAGGATGTTTCCACAAGATTTTCAAAAAAAC
GAGAAAACGATTTCCAAAGTTTCTCATTCAGTATTTTCAGAAAATGATTTTTGAAAAGTAAGAAA
ACGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCAAAATTAGTAAGTCCTTCGGGCCATCAG
TAAGTCTTTCGAGCAAGATGATTAAATCCTTCGAGTCATCTGTCAGTCTTTCGAGCAAGATGATA
AGTCATTCAGGCCATCT
Found at i:15924 original size:42 final size:41
Alignment explanation
Indices: 15877--15995 Score: 134
Period size: 42 Copynumber: 2.9 Consensus size: 41
15867 AATTGGTAAG
15877 TCCTTCGGGTCATCAGTAAGTCTTTCGAGCAAGATGATTAAA
1 TCCTTCGGGTCATCAGTAAGTCTTTCGAGCAAGATGA-TAAA
* * * *
15919 TCCTTCGAGTCATCTGTCAGTCTTTCGAGCAAGATGATAAG
1 TCCTTCGGGTCATCAGTAAGTCTTTCGAGCAAGATGATAAA
* * *
15960 TCATTCGGGCCATCTA-TAAGATC-TTCGGGCAAGATG
1 TCCTTCGGGTCATC-AGTAAG-TCTTTCGAGCAAGATG
15996 CTTTAATATG
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
41 29 0.45
42 36 0.55
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (41 bp):
TCCTTCGGGTCATCAGTAAGTCTTTCGAGCAAGATGATAAA
Found at i:16405 original size:45 final size:45
Alignment explanation
Indices: 16350--16497 Score: 199
Period size: 45 Copynumber: 3.3 Consensus size: 45
16340 GATAGGGGAA
*
16350 TCAATC-TTTAGTGTTGTCTTTCTTGACTTTCTCGTAAAGAGGAG
1 TCAATCTTTTAGTGTTGTCTTTCTTGACTTTCTCATAAAGAGGAG
* *
16394 TCAATCTTTTAGTGTTGTCTTCCTTGACTTTCTCATAAGGAGGAG
1 TCAATCTTTTAGTGTTGTCTTTCTTGACTTTCTCATAAAGAGGAG
* * * * * *
16439 TTAATCTTTTAGTATTGTCATTCTTAACTTTCTCATAAAAATGAG
1 TCAATCTTTTAGTGTTGTCTTTCTTGACTTTCTCATAAAGAGGAG
*
16484 TCAACCTTTTAGTG
1 TCAATCTTTTAGTG
16498 ATGACATTCT
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 6 0.07
45 83 0.93
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (45 bp):
TCAATCTTTTAGTGTTGTCTTTCTTGACTTTCTCATAAAGAGGAG
Found at i:16506 original size:45 final size:45
Alignment explanation
Indices: 16350--16607 Score: 180
Period size: 45 Copynumber: 5.5 Consensus size: 45
16340 GATAGGGGAA
* * *
16350 TCAATC-TTTAGTGTTGTCTTTCTTGACTTTCTCGTAAAGAGGAG
1 TCAATCTTTTAGTGATGTCATTCTTGACTTTCTCATAAAGAGGAG
* *
16394 TCAATCTTTTAGTGTTGTC-TTCCTTGACTTTCTCATAAGGAGGAG
1 TCAATCTTTTAGTGATGTCATT-CTTGACTTTCTCATAAAGAGGAG
* * * *
16439 TTAATCTTTTAGT-ATTGTCATTCTTAACTTTCTCATAAAAATGAG
1 TCAATCTTTTAGTGA-TGTCATTCTTGACTTTCTCATAAAGAGGAG
* * **** *
16484 TCAACCTTTTAGTGATGACATTCTCAAATTGACTTTCTCGCGGAGATGAG
1 TCAATCTTTTAGTGATGTCA-T-TC---TTGACTTTCTCATAAAGAGGAG
* * * * *
16534 TCAACCTTTTATTGATGTCATTCCCAACTTGACTTTCTCGTAGAGATGAG
1 TCAATCTTTTAGTGATGTCATT-----CTTGACTTTCTCATAAAGAGGAG
* *
16584 TTAACCTTTTAGTGATGTCATTCT
1 TCAATCTTTTAGTGATGTCATTCT
16608 CAACTTGACT
Statistics
Matches: 176, Mismatches: 23, Indels: 29
0.77 0.10 0.13
Matches are distributed among these distances:
44 8 0.05
45 85 0.48
46 4 0.02
47 2 0.01
48 1 0.01
49 1 0.01
50 74 0.42
53 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (45 bp):
TCAATCTTTTAGTGATGTCATTCTTGACTTTCTCATAAAGAGGAG
Found at i:16534 original size:50 final size:50
Alignment explanation
Indices: 16479--16725 Score: 279
Period size: 50 Copynumber: 4.9 Consensus size: 50
16469 TCTCATAAAA
*
16479 ATGAGTCAACCTTTTAGTGATGACATTCTCAAATTGACTTTCTCGCGGAG
1 ATGAGTCAACCTTTTAGTGATGACATTCTCAACTTGACTTTCTCGCGGAG
* * * **
16529 ATGAGTCAACCTTTTATTGATGTCATTCCCAACTTGACTTTCTCGTAGAG
1 ATGAGTCAACCTTTTAGTGATGACATTCTCAACTTGACTTTCTCGCGGAG
* * *
16579 ATGAGTTAACCTTTTAGTGATGTCATTCTCAACTTGACTTTCTTGCGGAG
1 ATGAGTCAACCTTTTAGTGATGACATTCTCAACTTGACTTTCTCGCGGAG
* * *
16629 ATGAGTCAA-CTTTTCAGTAGTAT-CCTTTCTCAACTTAACTTTCTCGCGGAG
1 ATGAGTCAACCTTTT-AGT-G-ATGACATTCTCAACTTGACTTTCTCGCGGAG
*
16680 AGGAGTCAA-CTTTTCAGT-A-GTATCATTCCTCAACTTGACTTTCTCG
1 ATGAGTCAACCTTTT-AGTGATG-A-CATT-CTCAACTTGACTTTCTCG
16726 TGTAGAGAAA
Statistics
Matches: 169, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 5 0.03
50 102 0.60
51 59 0.35
52 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (50 bp):
ATGAGTCAACCTTTTAGTGATGACATTCTCAACTTGACTTTCTCGCGGAG
Found at i:17650 original size:134 final size:135
Alignment explanation
Indices: 17282--17816 Score: 612
Period size: 134 Copynumber: 4.0 Consensus size: 135
17272 CCCGAATCAG
* * * *
17282 TTCCCTGAAGAGCAACGAAATGAATCAAAGTTTTTCTCGAGTCTGACCTCCCCTAAAAATTAGCG
1 TTCCCTGAAGAGCAATGAAGTGAATCAAAGTTTTTCTCGAGTCTGACCTCCCCTAAAGAGTAGCG
* * * ** *
17347 GAGCAGATTCTTTTTCTTT---A--T-AT-TT-ATGAAGAGCAATGAAGCAAATCACATTCGATT
66 GAGTAGATTCTTCTTCTTTCAGATTTGATCTTCCTGAAGAGCAGCGAAGCAAATCAAATTCGATT
17404 CAATC
131 CAATC
* * *
17409 TTCCCTGAAGAG-AA-GCAAAGTGAATCAACGTTTTTCTCGAGTCTGACCTCCACTAAAGAGTAA
1 TTCCCTGAAGAGCAATG--AAGTGAATCAAAGTTTTTCTCGAGTCTGACCTCCCCTAAAGAGTAG
* * *
17472 CAGAGAAGATTCTTCTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAATTCGA
64 CGGAGTAGATTCTTCTTCTTTCAGATTTGATCTTCCTGAAGAGCAGCGAAGCAAATCAAATTCGA
17537 TTCAATC
129 TTCAATC
* * * *
17544 TTCCCTAAAGAGCAATGAAGTGAATCAAAG-TTTTCTCGAGTCTAATCTCCCCTAAAGAGTAGTG
1 TTCCCTGAAGAGCAATGAAGTGAATCAAAGTTTTTCTCGAGTCTGACCTCCCCTAAAGAGTAGCG
* * * * *
17608 GAGTAGATTCTTCATCTTTTAGATTTGGTCTTCCTGAAGAGCATCGAAGCAAATCAAATTTGATT
66 GAGTAGATTCTTCTTCTTTCAGATTTGATCTTCCTGAAGAGCAGCGAAGCAAATCAAATTCGATT
* *
17673 TAAAC
131 CAATC
* * * * * *
17678 TTCCCTGAAGAGGAGTGATGTGAATCAAAG-TTTTCTCGAGTCTGATCTTCCCTAAAGAGTAGTG
1 TTCCCTGAAGAGCAATGAAGTGAATCAAAGTTTTTCTCGAGTCTGACCTCCCCTAAAGAGTAGCG
* * * *
17742 GAGTATATT-TTCTTCTTTCAGATTTGATTTTCCTGAAGAGCAGTGAAGCAAATC-GATTCTGAT
66 GAGTAGATTCTTCTTCTTTCAGATTTGATCTTCCTGAAGAGCAGCGAAGCAAATCAAATTC-GAT
17805 TCAATC
130 TCAATC
17811 TTCCCT
1 TTCCCT
17817 AAAGTTGTAG
Statistics
Matches: 349, Mismatches: 46, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
125 1 0.00
126 2 0.01
127 70 0.20
130 1 0.00
132 4 0.01
133 53 0.15
134 159 0.46
135 56 0.16
136 2 0.01
137 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (135 bp):
TTCCCTGAAGAGCAATGAAGTGAATCAAAGTTTTTCTCGAGTCTGACCTCCCCTAAAGAGTAGCG
GAGTAGATTCTTCTTCTTTCAGATTTGATCTTCCTGAAGAGCAGCGAAGCAAATCAAATTCGATT
CAATC
Found at i:17808 original size:267 final size:262
Alignment explanation
Indices: 17282--17820 Score: 649
Period size: 267 Copynumber: 2.0 Consensus size: 262
17272 CCCGAATCAG
* * *
17282 TTCCCTGAAGAGCAACGAAATGAATCAAAGTTTTTCTCGAGTCTGACCTCCCCTAAAAATTAGCG
1 TTCCCTAAAGAGCAACGAAATGAATCAAAGTTTTTCTCGAGTCTAACCTCCCCTAAAAAGTAGCG
** * *
17347 GAGCAGATTCTTTTTCTTTATATTTATGAAGAGCAATGAAGCAAATCACATTCGATTCAATCTTC
66 GAGCAGATTCTTCATCTTTATATTTATGAAGAGCAATGAAGCAAATCAAATTCGATTCAAACTTC
*
17412 CCTGAAGAGAAGCAAAGTGAATCAACGTTTTTCTCGAGTCTGACCTCCACTAAAGAGTAACAGAG
131 CCTGAAGAGAAGCAAAGTGAATCAAAGTTTTTCTCGAGTCTGACCTCCACTAAAGAGTAACAGAG
*
17477 AAGATTCTTCTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAATTCGATTCAA
196 AAGATTCTTCTTCTTTCAGATTTGATCTTCCTGAAGAGCAGCGAAGCAAATCAAATTCGATTCAA
17542 TC
261 TC
* * * * *
17544 TTCCCTAAAGAGCAATGAAGTGAATCAAAG-TTTTCTCGAGTCTAATCTCCCCTAAAGAGTAGTG
1 TTCCCTAAAGAGCAACGAAATGAATCAAAGTTTTTCTCGAGTCTAACCTCCCCTAAAAAGTAGCG
* * * *
17608 GAGTAGATTCTTCATCTTTTAGATTTGGTCTTCCTGAAGAGC-ATCGAAGCAAATCAAATTTGAT
66 GAGCAGATTCTTCATC-TTT--A--T-AT-TT-ATGAAGAGCAAT-GAAGCAAATCAAATTCGAT
* * ** * *
17672 TTAAACTTCCCTGAAGAGGAGTGATGTGAATCAAAG-TTTTCTCGAGTCTGATCTTCC-CTAAAG
122 TCAAACTTCCCTGAAGAGAAGCAAAGTGAATCAAAGTTTTTCTCGAGTCTGA-CCTCCACTAAAG
*** * * * * *
17735 AGTAGTGGAGTATATT-TTCTTCTTTCAGATTTGATTTTCCTGAAGAGCAGTGAAGCAAATC-GA
186 AGTAACAGAGAAGATTCTTCTTCTTTCAGATTTGATCTTCCTGAAGAGCAGCGAAGCAAATCAAA
17798 TTCTGATTCAATC
251 TTC-GATTCAATC
17811 TTCCCTAAAG
1 TTCCCTAAAG
17821 TTGTAGTAGA
Statistics
Matches: 234, Mismatches: 32, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
261 42 0.18
262 30 0.13
264 1 0.00
266 5 0.02
267 62 0.26
268 36 0.15
269 58 0.25
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (262 bp):
TTCCCTAAAGAGCAACGAAATGAATCAAAGTTTTTCTCGAGTCTAACCTCCCCTAAAAAGTAGCG
GAGCAGATTCTTCATCTTTATATTTATGAAGAGCAATGAAGCAAATCAAATTCGATTCAAACTTC
CCTGAAGAGAAGCAAAGTGAATCAAAGTTTTTCTCGAGTCTGACCTCCACTAAAGAGTAACAGAG
AAGATTCTTCTTCTTTCAGATTTGATCTTCCTGAAGAGCAGCGAAGCAAATCAAATTCGATTCAA
TC
Found at i:20086 original size:2 final size:2
Alignment explanation
Indices: 20069--20134 Score: 114
Period size: 2 Copynumber: 33.0 Consensus size: 2
20059 TTTATAATTC
* *
20069 AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20111 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
20135 GGTTGCAGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:23687 original size:17 final size:17
Alignment explanation
Indices: 23662--23717 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
23652 TTTTTAAGTA
*
23662 AAAAAATAAAAAAAATT
1 AAAATATAAAAAAAATT
23679 AAAATATAAAAAATCAA-T
1 AAAATATAAAAAA--AATT
23697 AAAATA-AAAAAAATATT
1 AAAATATAAAAAAA-ATT
23714 AAAA
1 AAAA
23718 ATTCAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
15 1 0.03
16 1 0.03
17 23 0.68
18 7 0.21
19 2 0.06
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAATATAAAAAAAATT
Found at i:23725 original size:18 final size:15
Alignment explanation
Indices: 23672--23752 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 15
23662 AAAAAATAAA
23672 AAAAATT-AAAATAT
1 AAAAATTAAAAATAT
*
23686 AAAAAATCAATAAA-AT
1 -AAAAATTAA-AAATAT
*
23702 AAAAA--AAATAT-T
1 AAAAATTAAAAATAT
23714 AAAAATTCAAAAATAAGT
1 AAAAATT-AAAAAT-A-T
23732 AAAAATTTAAAAATAT
1 AAAAA-TTAAAAATAT
23748 AAAAA
1 AAAAA
23753 CATATAAAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 19
0.71 0.04 0.25
Matches are distributed among these distances:
12 8 0.15
13 2 0.04
15 16 0.30
16 9 0.17
17 4 0.08
18 12 0.23
19 2 0.04
ACGTcount: A:0.73, C:0.02, G:0.01, T:0.23
Consensus pattern (15 bp):
AAAAATTAAAAATAT
Found at i:23726 original size:26 final size:29
Alignment explanation
Indices: 23679--23745 Score: 81
Period size: 26 Copynumber: 2.5 Consensus size: 29
23669 AAAAAAAATT
*
23679 AAAATA-TAAAAAATCAATAAAATAA-AA
1 AAAATATTAAAAATTCAATAAAATAAGAA
*
23706 AAAATATTAAAAATTC-A-AAAATAAGTA
1 AAAATATTAAAAATTCAATAAAATAAGAA
23733 AAAAT-TTAAAAAT
1 AAAATATTAAAAAT
23746 ATAAAAACAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
26 15 0.42
27 13 0.36
28 8 0.22
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (29 bp):
AAAATATTAAAAATTCAATAAAATAAGAA
Found at i:23759 original size:10 final size:9
Alignment explanation
Indices: 23660--23766 Score: 64
Period size: 9 Copynumber: 12.0 Consensus size: 9
23650 AATTTTTAAG
23660 TAAAAAA-A
1 TAAAAAATA
*
23668 TAAAAAAAA
1 TAAAAAATA
*
23677 T-TAAAATA
1 TAAAAAATA
23685 TAAAAAATCA
1 TAAAAAAT-A
*
23695 -ATAAAATA
1 TAAAAAATA
*
23703 AAAAAAATA
1 TAAAAAATA
*
23712 TTAAAAAT-
1 TAAAAAATA
*
23720 TCAAAAATA
1 TAAAAAATA
23729 -AGTAAAAAT-
1 TA--AAAAATA
*
23738 TTAAAAATA
1 TAAAAAATA
23747 TAAAAACATA
1 TAAAAA-ATA
23757 TAAAAGAATA
1 TAAAA-AATA
23767 AATTATTAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
8 27 0.35
9 31 0.40
10 18 0.23
11 1 0.01
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (9 bp):
TAAAAAATA
Found at i:23761 original size:26 final size:27
Alignment explanation
Indices: 23662--23752 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 27
23652 TTTTTAAGTA
* * *
23662 AAAAAATAAAAAA-AA-TTAAAATATA
1 AAAAATTAAAAAATAAGTAAAAATATT
* *
23687 AAAAATCAATAAAATAA-AAAAAATATT
1 AAAAATTAA-AAAATAAGTAAAAATATT
*
23714 AAAAATTCAAAAATAAGTAAAAAT-TT
1 AAAAATTAAAAAATAAGTAAAAATATT
23740 AAAAATATAAAAA
1 AAAAAT-TAAAAA
23753 CATATAAAAG
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
25 7 0.13
26 19 0.36
27 27 0.51
ACGTcount: A:0.75, C:0.02, G:0.01, T:0.22
Consensus pattern (27 bp):
AAAAATTAAAAAATAAGTAAAAATATT
Found at i:24205 original size:23 final size:22
Alignment explanation
Indices: 24179--24229 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
24169 AAAATAATTA
*
24179 TAATTTATTATTTTTATAGCTTC
1 TAATTTATTA-TTTTATAACTTC
*
24202 TAATATTTTTATTTTATAACTTC
1 TAAT-TTATTATTTTATAACTTC
*
24225 CAATT
1 TAATT
24230 AACATTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 1 0.04
23 18 0.75
24 5 0.21
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (22 bp):
TAATTTATTATTTTATAACTTC
Found at i:25787 original size:3 final size:3
Alignment explanation
Indices: 25779--25823 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
25769 GAAAACAGAA
*
25779 GAG GAG GAG GAT GAG GAG GAG GAG GAG GAG GAG GAG GAAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG G-AG GAG GA
25824 AGAATGAATG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.36, C:0.00, G:0.62, T:0.02
Consensus pattern (3 bp):
GAG
Found at i:29006 original size:124 final size:125
Alignment explanation
Indices: 28785--29124 Score: 461
Period size: 124 Copynumber: 2.7 Consensus size: 125
28775 TAATACTCTT
* * *
28785 CAGAACATACCATTAATAATGCAGGATGCCAGAAAATGCCAACAACTTTCCAGTGCCCCATCAAT
1 CAGAACGTACCATTAATAATGCAGGATGCCAGAAAATGCAAACAACTTTTCAGTGCCCCATCAAT
** * *
28850 CATCTTCATTAACTTTTCAGTAAAATGTCATCTCTAATAATGCACCATGCCCGAAAATGA
66 CATCTTCAACAACTTTTCAGTGAAATGACATCTCTAATAATGCACCATGCCCGAAAATGA
* * * *
28910 CAGAACGTTCCATTAATAATGTAGGATGCCAGAAAATGCTAGCAA-TTTTCAGTGCCCCATCAAT
1 CAGAACGTACCATTAATAATGCAGGATGCCAGAAAATGCAAACAACTTTTCAGTGCCCCATCAAT
* * * *
28974 CATCTTCAGCAAGTTTTCAGTGAAATGACATCTCTAATGATGCACCATGCCCGAAAATGT
66 CATCTTCAACAACTTTTCAGTGAAATGACATCTCTAATAATGCACCATGCCCGAAAATGA
** * * *
29034 CA-AAGCGGGCCATTAATAATACAGGATGTCAGAAAATGCAAACAACTTTTCAGT-TCCCATCAA
1 CAGAA-CGTACCATTAATAATGCAGGATGCCAGAAAATGCAAACAACTTTTCAGTGCCCCATCAA
*
29097 TCATCTTCAACAACTTCTCAGTGAAATG
65 TCATCTTCAACAACTTTTCAGTGAAATG
29125 TCAACTCATT
Statistics
Matches: 189, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
123 2 0.01
124 139 0.74
125 48 0.25
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (125 bp):
CAGAACGTACCATTAATAATGCAGGATGCCAGAAAATGCAAACAACTTTTCAGTGCCCCATCAAT
CATCTTCAACAACTTTTCAGTGAAATGACATCTCTAATAATGCACCATGCCCGAAAATGA
Found at i:31435 original size:29 final size:28
Alignment explanation
Indices: 31402--31466 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
31392 TAGTATTTAA
*
31402 AATTTTTTCCTTTA-AATTTCCAACATTTT
1 AATTTTTTCC-TTACAA-TTACAACATTTT
* *
31431 AATTTTAGTCCTTACAATTACAATATTTT
1 AATTTT-TTCCTTACAATTACAACATTTT
31460 AATTTTT
1 AATTTTT
31467 CAATTTTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
29 25 0.83
30 5 0.17
ACGTcount: A:0.31, C:0.14, G:0.02, T:0.54
Consensus pattern (28 bp):
AATTTTTTCCTTACAATTACAACATTTT
Found at i:33261 original size:22 final size:23
Alignment explanation
Indices: 33199--33264 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
33189 TATTATATAT
* **
33199 ATATATATAATATTAACTTTAAGAA
1 ATATTTAT-ATATTAAC-TTATTAA
*
33224 ATATTTTTATATTAACTTATTAA
1 ATATTTATATATTAACTTATTAA
33247 ATATTTAT-TATTAACTTA
1 ATATTTATATATTAACTTA
33265 ATTTAAAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
22 10 0.28
23 12 0.33
24 8 0.22
25 6 0.17
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.50
Consensus pattern (23 bp):
ATATTTATATATTAACTTATTAA
Found at i:33514 original size:23 final size:25
Alignment explanation
Indices: 33472--33535 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 25
33462 ATTTTTAAAT
33472 TAAGTT-AT-TAATAAATATATTAA
1 TAAGTTAATATAATAAATATATTAA
**
33495 TAAGTTAATATAA-AAA-ATATTTT
1 TAAGTTAATATAATAAATATATTAA
33518 TAAGTTAATATATATAAA
1 TAAGTTAATATA-ATAAA
33536 ATGTTATGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
23 23 0.66
24 6 0.17
25 6 0.17
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (25 bp):
TAAGTTAATATAATAAATATATTAA
Found at i:36149 original size:42 final size:42
Alignment explanation
Indices: 36090--36186 Score: 140
Period size: 42 Copynumber: 2.3 Consensus size: 42
36080 TCCTACTTTG
* * * *
36090 AGAGCCATCACCTGATCGAGCAGATTCTACAGCTCGACACCC
1 AGAGCCATCACCTGATCGAGCAGATTATACACCTCCACAACC
* *
36132 AGAGCCATCACCTGATCGAGCCGATTATACACCTCCACAACG
1 AGAGCCATCACCTGATCGAGCAGATTATACACCTCCACAACC
36174 AGAGCCATCACCT
1 AGAGCCATCACCT
36187 ATTCTATCAC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.30, C:0.36, G:0.18, T:0.16
Consensus pattern (42 bp):
AGAGCCATCACCTGATCGAGCAGATTATACACCTCCACAACC
Found at i:36344 original size:21 final size:21
Alignment explanation
Indices: 36304--36344 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36294 AAGGGAGTTA
* *
36304 CGTGATGAGGTTAGTGCTTTG
1 CGTGATGAGGTCAGTACTTTG
*
36325 CGTGATGAGGTCGGTACTTT
1 CGTGATGAGGTCAGTACTTT
36345 ACGTCACGAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.37, T:0.37
Consensus pattern (21 bp):
CGTGATGAGGTCAGTACTTTG
Found at i:36347 original size:42 final size:42
Alignment explanation
Indices: 36301--36398 Score: 99
Period size: 42 Copynumber: 2.3 Consensus size: 42
36291 GTTAAGGGAG
* *
36301 TTACGTGATGAGGTTAGTGCTTTGCGTGATGAGGT-CGGTACT
1 TTACGTGATGAGGTTAGTGCATGGCGTGATGAGGTACGGT-CT
* * *** *
36343 TTACGTCACGACAATGGTGCATGGCGTGATGAGGTACGGTCT
1 TTACGTGATGAGGTTAGTGCATGGCGTGATGAGGTACGGTCT
*
36385 TTACGTGGTGAGGT
1 TTACGTGATGAGGT
36399 ATATGTTTTA
Statistics
Matches: 41, Mismatches: 14, Indels: 2
0.72 0.25 0.04
Matches are distributed among these distances:
42 37 0.90
43 4 0.10
ACGTcount: A:0.18, C:0.14, G:0.36, T:0.32
Consensus pattern (42 bp):
TTACGTGATGAGGTTAGTGCATGGCGTGATGAGGTACGGTCT
Found at i:36416 original size:42 final size:43
Alignment explanation
Indices: 36370--36462 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 43
36360 TGCATGGCGT
* **
36370 GATGAGGTACGGT-CTTTACGTGGTGAGGTATATGTTTTACGC
1 GATGAGGTACGGTGCTTTACATGGTGAGGTATATACTTTACGC
** * * *
36412 GATGA-CAATGGTGCTTTACATGGTGAGGTATCTACTTTACGT
1 GATGAGGTACGGTGCTTTACATGGTGAGGTATATACTTTACGC
36454 GATGAGGTA
1 GATGAGGTA
36463 GCCGCTCTAC
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
41 4 0.10
42 34 0.87
43 1 0.03
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.34
Consensus pattern (43 bp):
GATGAGGTACGGTGCTTTACATGGTGAGGTATATACTTTACGC
Found at i:36582 original size:4 final size:4
Alignment explanation
Indices: 36573--36618 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
36563 TTTTTTGGCA
* * * *
36573 TTAT TTAT TTAT TTAT TTAT TTAC TAAT TTAT GTAT TAAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
36619 TTAGCGGCTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (4 bp):
TTAT
Found at i:36811 original size:42 final size:42
Alignment explanation
Indices: 36764--36880 Score: 180
Period size: 42 Copynumber: 2.8 Consensus size: 42
36754 TTCACCTGTT
* * * *
36764 ATCGTTCAAGAGGCCCCTCCTATCATTCAAGAGTCCCCTCTC
1 ATCGTTCAAGAGGTCCCTCCCACCATTCAAGAGGCCCCTCTC
* *
36806 ATCGTTCAAGAGGTCCCTCCCACCGTTCAAGAGGCCCCTGTC
1 ATCGTTCAAGAGGTCCCTCCCACCATTCAAGAGGCCCCTCTC
36848 ATCGTTCAAGAGGTCCCTCCCACCATTCAAGAG
1 ATCGTTCAAGAGGTCCCTCCCACCATTCAAGAG
36881 CCCGATTCAC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
ATCGTTCAAGAGGTCCCTCCCACCATTCAAGAGGCCCCTCTC
Found at i:36876 original size:21 final size:21
Alignment explanation
Indices: 36764--36880 Score: 128
Period size: 21 Copynumber: 5.6 Consensus size: 21
36754 TTCACCTGTT
* *
36764 ATCGTTCAAGAGGCCCCTCCT
1 ATCGTTCAAGAGGTCCCTCCC
* *
36785 ATCATTCAAGA-GTCCCCTCTC
1 ATCGTTCAAGAGGT-CCCTCCC
36806 ATCGTTCAAGAGGTCCCTCCC
1 ATCGTTCAAGAGGTCCCTCCC
* * **
36827 ACCGTTCAAGAGGCCCCTGTC
1 ATCGTTCAAGAGGTCCCTCCC
36848 ATCGTTCAAGAGGTCCCTCCC
1 ATCGTTCAAGAGGTCCCTCCC
* *
36869 ACCATTCAAGAG
1 ATCGTTCAAGAG
36881 CCCGATTCAC
Statistics
Matches: 78, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
20 1 0.01
21 75 0.96
22 2 0.03
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.23
Consensus pattern (21 bp):
ATCGTTCAAGAGGTCCCTCCC
Found at i:43354 original size:12 final size:12
Alignment explanation
Indices: 43337--43365 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
43327 TGTCAAGGAT
43337 GGTGAAATTATA
1 GGTGAAATTATA
43349 GGTGAAATTATA
1 GGTGAAATTATA
43361 GGTGA
1 GGTGA
43366 TCCATCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (12 bp):
GGTGAAATTATA
Found at i:45226 original size:20 final size:19
Alignment explanation
Indices: 45201--45260 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 19
45191 TTTTAGTGCA
*
45201 GAGGGAATCGATCTCCCCTT
1 GAGGGAACCGAT-TCCCCTT
45221 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATT-CCCC-TT
45242 GAAGGGGAACCGATTCCCC
1 G-A-GGGAACCGATTCCCC
45261 CCACAGGGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
19 1 0.03
20 15 0.43
21 3 0.09
22 5 0.14
23 11 0.31
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.20
Consensus pattern (19 bp):
GAGGGAACCGATTCCCCTT
Found at i:45270 original size:21 final size:21
Alignment explanation
Indices: 45244--45283 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
45234 CCCCCTTTGA
*
45244 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
45265 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
45284 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:51523 original size:12 final size:12
Alignment explanation
Indices: 51506--51534 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
51496 TGTCAAGGAT
51506 GGTGAAATTATA
1 GGTGAAATTATA
51518 GGTGAAATTATA
1 GGTGAAATTATA
51530 GGTGA
1 GGTGA
51535 TCCATCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (12 bp):
GGTGAAATTATA
Found at i:53464 original size:21 final size:21
Alignment explanation
Indices: 53438--53477 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
53428 CCCACTTTGA
*
53438 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
53459 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
53478 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:59778 original size:12 final size:12
Alignment explanation
Indices: 59761--59789 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
59751 TGTCAAGGAT
59761 GGTGAAATTATA
1 GGTGAAATTATA
59773 GGTGAAATTATA
1 GGTGAAATTATA
59785 GGTGA
1 GGTGA
59790 TCCATCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (12 bp):
GGTGAAATTATA
Found at i:61708 original size:23 final size:21
Alignment explanation
Indices: 61656--61717 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 21
61646 TTTTAGTGCA
*
61656 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
61676 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
61697 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGATTCCCCCC
61718 ACAGGGGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 1 0.03
23 16 0.44
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:61725 original size:21 final size:21
Alignment explanation
Indices: 61699--61738 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
61689 CCCCCTTTGA
*
61699 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
61720 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
61739 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:66858 original size:12 final size:12
Alignment explanation
Indices: 66837--66870 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
66827 GGTTGTGGGT
*
66837 TTTGAGATTGTG
1 TTTGATATTGTG
66849 TTTGATATTGTG
1 TTTGATATTGTG
*
66861 TTTGGTATTG
1 TTTGATATTG
66871 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:67488 original size:16 final size:15
Alignment explanation
Indices: 67466--67504 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
67456 GAAATCATTG
67466 AAAAATTATATAGAAA
1 AAAAATTATATA-AAA
* *
67482 TAAAATTATGTAAAA
1 AAAAATTATATAAAA
67497 AAAAATTA
1 AAAAATTA
67505 GAGATGGGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (15 bp):
AAAAATTATATAAAA
Found at i:67704 original size:20 final size:21
Alignment explanation
Indices: 67686--67868 Score: 162
Period size: 21 Copynumber: 9.0 Consensus size: 21
67676 TTGCAAATTC
*
67686 GAAAATCGAGTTGCGAATTTG
1 GAAAATCGCGTTGCGAATTTG
*
67707 G-AAATCGCGTTGTGAATTTG
1 GAAAATCGCGTTGCGAATTTG
*
67727 GAAAATCGCGTTGTGAATTTG
1 GAAAATCGCGTTGCGAATTTG
*
67748 GAAAATCGCGTTGTGAATTTG
1 GAAAATCGCGTTGCGAATTTG
*
67769 GAAAATCGCGTTGCG-ATTTA
1 GAAAATCGCGTTGCGAATTTG
* * * * *
67789 CATATTCGCATTGTGAATTTG
1 GAAAATCGCGTTGCGAATTTG
* * *
67810 GAAACT-GTGTTGCGAAATTG
1 GAAAATCGCGTTGCGAATTTG
** * *
67830 G-AGTTCGCATTGCGAA-TTC
1 GAAAATCGCGTTGCGAATTTG
*
67849 G-AGATCGCGTTGCGAATTTG
1 GAAAATCGCGTTGCGAATTTG
67869 TTGGTTATTT
Statistics
Matches: 133, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
19 18 0.14
20 53 0.40
21 62 0.47
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (21 bp):
GAAAATCGCGTTGCGAATTTG
Found at i:67710 original size:21 final size:21
Alignment explanation
Indices: 67686--67813 Score: 170
Period size: 21 Copynumber: 6.2 Consensus size: 21
67676 TTGCAAATTC
* *
67686 GAAAATCGAGTTGCGAATTTG
1 GAAAATCGCGTTGTGAATTTG
67707 G-AAATCGCGTTGTGAATTTG
1 GAAAATCGCGTTGTGAATTTG
67727 GAAAATCGCGTTGTGAATTTG
1 GAAAATCGCGTTGTGAATTTG
67748 GAAAATCGCGTTGTGAATTTG
1 GAAAATCGCGTTGTGAATTTG
* *
67769 GAAAATCGCGTTGCG-ATTTA
1 GAAAATCGCGTTGTGAATTTG
* * * *
67789 CATATTCGCATTGTGAATTTG
1 GAAAATCGCGTTGTGAATTTG
67810 GAAA
1 GAAA
67814 CTGTGTTGCG
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
20 32 0.34
21 61 0.66
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.33
Consensus pattern (21 bp):
GAAAATCGCGTTGTGAATTTG
Found at i:67733 original size:41 final size:41
Alignment explanation
Indices: 67686--67868 Score: 185
Period size: 41 Copynumber: 4.5 Consensus size: 41
67676 TTGCAAATTC
*
67686 GAAAATCGAGTTGCGAATTTGGAAATCGCGTTGTGAATTTG
1 GAAAATCGCGTTGCGAATTTGGAAATCGCGTTGTGAATTTG
*
67727 GAAAATCGCGTTGTGAATTTGGAAAATCGCGTTGTGAATTTG
1 GAAAATCGCGTTGCGAATTTGG-AAATCGCGTTGTGAATTTG
** * *
67769 GAAAATCGCGTTGCG-ATTTACATATTCGCATTGTGAATTTG
1 GAAAATCGCGTTGCGAATTTGGA-AATCGCGTTGTGAATTTG
* * * ** * * *
67810 GAAACT-GTGTTGCGAAATTGGAGTTCGCATTGCGAA-TTC
1 GAAAATCGCGTTGCGAATTTGGAAATCGCGTTGTGAATTTG
*
67849 G-AGATCGCGTTGCGAATTTG
1 GAAAATCGCGTTGCGAATTTG
67869 TTGGTTATTT
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 15 0.13
40 20 0.17
41 49 0.41
42 33 0.28
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (41 bp):
GAAAATCGCGTTGCGAATTTGGAAATCGCGTTGTGAATTTG
Found at i:67754 original size:62 final size:61
Alignment explanation
Indices: 67686--67831 Score: 168
Period size: 62 Copynumber: 2.4 Consensus size: 61
67676 TTGCAAATTC
* ** *
67686 GAAAATCGAGTTGCGAATTTGGAAATCGCGTTGTGAATTTGGAAAATCGCGTTGTGAATTTG
1 GAAAATCGAGTTGCGAATTTGGAAATCGCGTTGCG-ATTTACAAAATCGCATTGTGAATTTG
* * * *
67748 GAAAATCGCGTTGTGAATTTGGAAAATCGCGTTGCGATTTACATATTCGCATTGTGAATTTG
1 GAAAATCGAGTTGCGAATTTGG-AAATCGCGTTGCGATTTACAAAATCGCATTGTGAATTTG
* * *
67810 GAAACT-GTGTTGCGAAATTGGA
1 GAAAATCGAGTTGCGAATTTGGA
67832 GTTCGCATTG
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
60 1 0.01
61 12 0.17
62 46 0.65
63 12 0.17
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (61 bp):
GAAAATCGAGTTGCGAATTTGGAAATCGCGTTGCGATTTACAAAATCGCATTGTGAATTTG
Found at i:67856 original size:19 final size:19
Alignment explanation
Indices: 67819--67866 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
67809 GGAAACTGTG
* *
67819 TTGCGAAATTGGAGTTCGCA
1 TTGCG-AATTCGAGATCGCA
*
67839 TTGCGAATTCGAGATCGCG
1 TTGCGAATTCGAGATCGCA
67858 TTGCGAATT
1 TTGCGAATT
67867 TGTTGGTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (19 bp):
TTGCGAATTCGAGATCGCA
Found at i:71043 original size:4 final size:4
Alignment explanation
Indices: 71034--71061 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
71024 TTTGCATTCC
71034 CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA
71062 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:76702 original size:21 final size:21
Alignment explanation
Indices: 76676--76727 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
76666 TGCGCTGATG
*
76676 TGGCAGTTCACAG-TGTTGACA
1 TGGCAGTCCAC-GCTGTTGACA
76697 TGGCAGTCCACGCTGTTGACA
1 TGGCAGTCCACGCTGTTGACA
* *
76718 TAGTAGTCCA
1 TGGCAGTCCA
76728 GGGTGACAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (21 bp):
TGGCAGTCCACGCTGTTGACA
Found at i:78403 original size:6 final size:6
Alignment explanation
Indices: 78392--78418 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
78382 CAGGTTTTCC
78392 AAGATT AAGATT AAGATT AAGATT AAG
1 AAGATT AAGATT AAGATT AAGATT AAG
78419 CCAAACTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.30
Consensus pattern (6 bp):
AAGATT
Found at i:78538 original size:41 final size:41
Alignment explanation
Indices: 78466--78558 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 41
78456 AACTTAGGGT
* * *
78466 GTGTTTGATAGCTGAAAATATTTTTCAAAAAATGTTTTTCG
1 GTGTTTGATACCTGAAAACATTATTCAAAAAATGTTTTTCG
78507 GTGTTTGATACCTGGAAAACATTATTCAAAAAATGTTTTTCG
1 GTGTTTGATACCT-GAAAACATTATTCAAAAAATGTTTTTCG
78549 GTGTTTGATA
1 GTGTTTGATA
78559 GCTGTAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
41 12 0.25
42 36 0.75
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (41 bp):
GTGTTTGATACCTGAAAACATTATTCAAAAAATGTTTTTCG
Found at i:78581 original size:42 final size:40
Alignment explanation
Indices: 78466--78618 Score: 144
Period size: 42 Copynumber: 3.6 Consensus size: 40
78456 AACTTAGGGT
*
78466 GTGTTTGATAGCTGAAAATATTTTTCAAAAAATGTTTTTCG
1 GTGTTTGATAGCTG-TAATATTTTTCAAAAAATGTTTTTCG
* * * *
78507 GTGTTTGATACCTGGAAAACATTATTCAAAAAATGTTTTTCG
1 GTGTTTGATAGCT-G-TAATATTTTTCAAAAAATGTTTTTCG
* * * *
78549 GTGTTTGATAGCTGTAATTTGTTTTACGAAAAATATTTTTCTA
1 GTGTTTGATAGCTGTAATAT-TTTT-CAAAAAATGTTTTTC-G
*
78592 GTGTTTGATAGTTGTAATTGATTTTTC
1 GTGTTTGATAGCTGTAA-T-ATTTTTC
78619 TATGTAATTC
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
40 3 0.03
41 16 0.17
42 51 0.55
43 17 0.18
44 5 0.05
45 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.46
Consensus pattern (40 bp):
GTGTTTGATAGCTGTAATATTTTTCAAAAAATGTTTTTCG
Found at i:78626 original size:17 final size:17
Alignment explanation
Indices: 78604--78638 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
78594 GTTTGATAGT
* *
78604 TGTAATTGATTTTTCTA
1 TGTAATTCATTTTCCTA
78621 TGTAATTCATTTTCCTA
1 TGTAATTCATTTTCCTA
78638 T
1 T
78639 TTTTTTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.11, G:0.09, T:0.57
Consensus pattern (17 bp):
TGTAATTCATTTTCCTA
Found at i:78839 original size:17 final size:17
Alignment explanation
Indices: 78817--78849 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
78807 TTAATATTAT
*
78817 TATTATAATTTTAATAA
1 TATTATAATATTAATAA
78834 TATTATAATATTAATA
1 TATTATAATATTAATA
78850 TGTACTCGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTATAATATTAATAA
Found at i:79235 original size:30 final size:29
Alignment explanation
Indices: 79167--79267 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 29
79157 TTTTCTGAAA
*
79167 ATGTAATTTATTTTACGTAAAACAAATTT
1 ATGTAATTCATTTTACGTAAAACAAATTT
* *
79196 A-GATAATTCATTTTACGTAAAATATATTT
1 ATG-TAATTCATTTTACGTAAAACAAATTT
* * *
79225 GATGTAATTCATTTTATGTAAATCAATTTT
1 -ATGTAATTCATTTTACGTAAAACAAATTT
* *
79255 AGGTAATCCATTT
1 ATGTAATTCATTT
79268 AACATAAATC
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 1 0.02
29 35 0.59
30 22 0.37
31 1 0.02
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.46
Consensus pattern (29 bp):
ATGTAATTCATTTTACGTAAAACAAATTT
Found at i:79243 original size:14 final size:14
Alignment explanation
Indices: 79199--79267 Score: 50
Period size: 14 Copynumber: 4.7 Consensus size: 14
79189 CAAATTTAGA
*
79199 TAATTCATTTTACG
1 TAATTCATTTTATG
*
79213 TAAAATAT-ATTTGATG
1 T--AAT-TCATTTTATG
79229 TAATTCATTTTATG
1 TAATTCATTTTATG
* *
79243 TAAATCAATTTTAGG
1 TAATTC-ATTTTATG
*
79258 TAATCCATTT
1 TAATTCATTT
79268 AACATAAATC
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
13 1 0.02
14 20 0.47
15 11 0.26
16 10 0.23
17 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (14 bp):
TAATTCATTTTATG
Found at i:83246 original size:64 final size:63
Alignment explanation
Indices: 83178--83356 Score: 218
Period size: 64 Copynumber: 2.8 Consensus size: 63
83168 TGGAACACTT
* * * **
83178 AGTGCATCGATGCACCAAGTGTGCATCGATGCATAAAATGCATTCGATGTTTGAA-AATAGCCTG
1 AGTGCATCGATGCA-TAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAA-AACCCA
* * *
83242 AGTGCATCGGTGCAT-TGCTTGTGCATCGATGCATGAAATGCATTCGATGTTTTAATAAAACCCA
1 AGTGCATCGATGCATAAG--TGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAAAACCCA
*
83306 AGTGCATCGATGCATAGAGAGTGCATCGATGCATGAAATGCATTCGATGTT
1 AGTGCATCGATGCATA-AGTGTGCATCGATGCATGAAATGCATTCGATGTT
83357 CAATTTATTC
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
62 1 0.01
64 95 0.96
65 2 0.02
66 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (63 bp):
AGTGCATCGATGCATAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAAAACCCA
Found at i:83375 original size:64 final size:64
Alignment explanation
Indices: 83179--83384 Score: 190
Period size: 64 Copynumber: 3.2 Consensus size: 64
83169 GGAACACTTA
* * * *
83179 GTGCATCGATGCACCA-AGTGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAGCC--T
1 GTGCATCGATGCA-TAGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTCAATATA-CCAAT
83241 G
64 G
* * ** * *
83242 AGTGCATCGGTGCATTGCTTGTGCATCGATGCATGAAATGCATTCGATGTTTTAATAAAACCCAA
1 -GTGCATCGATGCATAGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTCAAT-ATA-CCAA
83307 --
63 TG
* * *
83307 GTGCATCGATGCATAGAGAGTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTATTCAATG
1 GTGCATCGATGCATAGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTCAATATA-CCAATG
*
83371 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
83385 GCCTTTGAAA
Statistics
Matches: 115, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
62 4 0.03
63 5 0.04
64 102 0.89
65 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (64 bp):
GTGCATCGATGCATAGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTCAATATACCAATG
Found at i:83722 original size:15 final size:15
Alignment explanation
Indices: 83702--83732 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83692 TATTTTTGAA
83702 ATCAAAATTACTATT
1 ATCAAAATTACTATT
83717 ATCAAAATTACTATT
1 ATCAAAATTACTATT
83732 A
1 A
83733 CTCCCCCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (15 bp):
ATCAAAATTACTATT
Found at i:86023 original size:24 final size:24
Alignment explanation
Indices: 85991--86073 Score: 70
Period size: 24 Copynumber: 3.6 Consensus size: 24
85981 GTATGTCTCT
85991 TGTGCATCGATGCACATTCAAGGG
1 TGTGCATCGATGCACATTCAAGGG
* *
86015 TGTGCATCGGTG--CA-TC-A-GC
1 TGTGCATCGATGCACATTCAAGGG
*
86034 TGATGTATCGATGCACATTCAAAGGG
1 TG-TGCATCGATGCACATTC-AAGGG
*
86060 -ATGCATCGATGCAC
1 TGTGCATCGATGCAC
86074 TATTAAATGT
Statistics
Matches: 45, Mismatches: 7, Indels: 14
0.68 0.11 0.21
Matches are distributed among these distances:
19 3 0.07
20 9 0.20
21 2 0.04
22 4 0.09
23 2 0.04
24 23 0.51
25 1 0.02
26 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (24 bp):
TGTGCATCGATGCACATTCAAGGG
Found at i:91860 original size:64 final size:63
Alignment explanation
Indices: 91792--91970 Score: 200
Period size: 64 Copynumber: 2.8 Consensus size: 63
91782 TGGAACACTT
* * * * **
91792 AGTGCATCGGTTCACCAAGTGTGCATCGATGCATAAAATGCATTCGATGTTTGAA-AATAGCCTG
1 AGTGCATCGGTGCA-TAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAA-AACCCA
* *
91856 AGTGCATCGGTGCAT-TGCTTGTGCATCGATGCATGAAATGCATTCGATGTTTTAATAAAACCCA
1 AGTGCATCGGTGCATAAG--TGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAAAACCCA
* * *
91920 AGTGCATCGATGCATAGAGAGTGCATTGATGCATGAAATGCATTCGATGTT
1 AGTGCATCGGTGCATA-AGTGTGCATCGATGCATGAAATGCATTCGATGTT
91971 CAATTTATTC
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
62 1 0.01
64 94 0.96
65 2 0.02
66 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (63 bp):
AGTGCATCGGTGCATAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAAAACCCA
Found at i:93054 original size:19 final size:20
Alignment explanation
Indices: 93009--93056 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
92999 ATATATATAT
*
93009 ATATATATATTTTAAAAAAT
1 ATATATATATTTTAAAAAAC
*
93029 ATAATATATATTTT-TAAAAC
1 AT-ATATATATTTTAAAAAAC
93049 ATATATAT
1 ATATATAT
93057 TATGAAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.24
20 8 0.32
21 11 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATATATATTTTAAAAAAC
Found at i:93128 original size:2 final size:2
Alignment explanation
Indices: 92974--93113 Score: 116
Period size: 2 Copynumber: 73.5 Consensus size: 2
92964 TATATAGTTT
* * *
92974 TA TA TA TA AA TA TA T- TT TA -A AA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * *
93014 TA TA T- TT TA -A AA AA TA TA -A TA TA TA TT TT TA -A AA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
93052 TA TA T- TA TGA -A GA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93093 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
93114 GTTTTAAGAT
Statistics
Matches: 118, Mismatches: 11, Indels: 18
0.80 0.07 0.12
Matches are distributed among these distances:
1 8 0.07
2 109 0.92
3 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (2 bp):
TA
Found at i:94438 original size:10 final size:10
Alignment explanation
Indices: 94412--94460 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
94402 AATTTTGTCC
94412 TTTATTTCAAT
1 TTTATTT-AAT
94423 TTTATTTAAT
1 TTTATTTAAT
*
94433 TCTATTT-AT
1 TTTATTTAAT
* *
94442 TATGTTTAAT
1 TTTATTTAAT
94452 TTTATTTAA
1 TTTATTTAA
94461 ACTAATACAC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
9 7 0.22
10 18 0.56
11 7 0.22
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (10 bp):
TTTATTTAAT
Found at i:94532 original size:21 final size:21
Alignment explanation
Indices: 94506--94557 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
94496 TTTTATATTA
94506 TTTATTTTTTCTAATGTTAAT
1 TTTATTTTTTCTAATGTTAAT
94527 TTTATTTTTTCTAATGTTAAT
1 TTTATTTTTTCTAATGTTAAT
*
94548 TTAATTTTTT
1 TTTATTTTTT
94558 TTTTAAAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.69
Consensus pattern (21 bp):
TTTATTTTTTCTAATGTTAAT
Found at i:98457 original size:30 final size:31
Alignment explanation
Indices: 98423--98502 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
98413 TTAATTTAAC
*
98423 TAAAATTT-TAAGAATTAAACTGAATAAAAA
1 TAAAATTTAAAAGAATTAAACTGAATAAAAA
*
98453 TAAAATTTAAAATAATTAAACTGAATAAAAA
1 TAAAATTTAAAAGAATTAAACTGAATAAAAA
*
98484 TAAAATTTAAAAGACTTAA
1 TAAAATTTAAAAGAATTAA
98503 CATATTATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 8 0.18
31 37 0.82
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (31 bp):
TAAAATTTAAAAGAATTAAACTGAATAAAAA
Done.