genome.fa.s5160.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005160.1 Hibiscus syriacus cultivar Beakdansim tig00011637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70821

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3250--3318	2	34.5	2	100	0	138	49	0	0	50	1.00
5319--5361	21	2.2	20	84	16	54	30	13	13	41	1.84
19166--19219	20	2.7	19	75	8	63	33	31	18	16	1.93
19206--19382	21	8.6	20	69	16	94	38	23	18	19	1.93
19268--19600	20	16.5	20	86	4	289	37	23	18	20	1.94
19330--19603	60	4.5	60	88	0	341	36	22	19	20	1.95
20461--20514	24	2.2	24	93	0	90	20	18	20	40	1.91
23027--23096	19	3.7	19	98	0	131	14	20	17	48	1.81
23304--23357	20	2.7	20	88	0	72	31	24	22	22	1.98
23350--23423	33	2.2	34	95	2	132	43	17	22	16	1.88
23602--23638	14	2.6	14	86	0	56	48	21	0	29	1.50
25133--25227	31	3.1	31	80	3	111	34	21	17	26	1.95
25361--25396	17	2.0	19	89	10	58	38	11	5	44	1.63
25880--26028	64	2.3	65	85	8	196	28	17	20	32	1.96
28546--28602	21	2.6	22	76	18	57	47	1	7	43	1.40
29439--29549	19	5.9	20	70	17	78	46	18	21	13	1.83
29569--29632	21	3.1	21	84	2	85	10	18	17	53	1.72
29576--29647	20	3.5	20	80	1	72	12	13	19	54	1.71
30208--30401	20	9.6	20	79	5	210	18	19	25	37	1.94
30208--30401	41	4.8	41	81	5	198	18	19	25	37	1.94
30253--30401	61	2.4	61	92	2	237	18	19	24	36	1.94
30253--30443	61	3.1	61	83	7	203	18	18	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30412--30458	20	2.3	20	89	7	69	12	19	25	42	1.86
34618--34713	20	5.2	20	70	21	82	45	17	23	12	1.83
34616--34775	19	9.1	19	67	21	107	45	19	23	11	1.83
34616--34770	33	4.5	33	86	5	202	46	19	22	11	1.82
34665--34753	14	5.6	14	68	23	52	44	21	22	11	1.83
34795--34858	21	3.1	21	82	6	78	12	20	15	51	1.75
34803--34873	20	3.5	20	82	5	81	12	15	18	53	1.73
35455--35608	20	7.6	19	74	12	76	19	18	23	38	1.93
35436--35550	40	2.8	40	86	1	167	20	18	23	38	1.93
35477--35623	61	2.4	60	88	2	213	19	19	23	37	1.94
35444--35623	41	4.4	41	82	4	168	20	18	23	38	1.93
37208--37243	18	2.0	18	100	0	72	11	22	50	16	1.77
44434--44485	18	2.9	18	88	0	86	11	19	48	21	1.80
46652--46690	17	2.3	17	86	8	53	23	5	10	61	1.48
46791--46828	18	2.1	18	90	0	58	50	2	0	47	1.15
53788--53818	2	15.5	2	100	0	62	51	0	0	48	1.00
57422--58012	54	11.1	54	82	6	613	24	24	18	33	1.97
57430--58017	105	5.5	103	82	7	606	24	24	18	32	1.97
57434--58012	268	2.2	263	87	6	819	24	24	18	33	1.97
58019--58398	55	7.0	55	90	0	507	27	29	14	28	1.95
57975--58399	110	3.9	110	87	3	553	28	28	14	28	1.95
59383--59460	8	9.4	8	82	15	54	15	7	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59383--59471	20	4.5	20	75	18	78	14	10	0	75	1.05
59386--59450	9	6.6	9	81	16	67	13	4	0	81	0.84

Tables:   1

The End!