Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005161.1 Hibiscus syriacus cultivar Beakdansim tig00011643_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83211

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6305--6365
29
2.1
29
84
0
77
37
19
3
39
1.68
16043--16102
11
5.5
11
90
4
95
60
18
1
20
1.45
16043--16102
21
2.8
22
89
5
95
60
18
1
20
1.45
18328--18417
21
4.3
22
91
5
134
61
20
0
18
1.35
18328--18417
10
8.5
11
89
7
134
61
20
0
18
1.35
18328--18417
31
2.8
32
90
6
139
61
20
0
18
1.35
36877--36934
20
2.8
21
78
5
64
60
17
10
12
1.58
39321--39629
18
17.1
18
68
16
149
41
7
7
44
1.59
39350--39653
33
9.5
33
76
15
309
42
7
7
42
1.60
39351--39606
58
4.2
58
86
9
341
42
7
7
42
1.62
39350--39606
91
2.8
90
77
11
295
42
7
7
42
1.61
39442--39490
25
2.0
25
87
0
71
40
8
8
42
1.64
39474--39654
71
2.7
69
85
9
203
42
6
8
42
1.61
39690--39801
7
16.3
7
76
14
65
47
3
6
42
1.46
39690--40457
20
37.5
20
64
25
99
45
5
5
43
1.51
39685--39789
27
3.8
29
85
7
87
48
2
5
42
1.41
39735--39789
27
2.1
27
93
3
94
50
3
5
40
1.43
39780--39858
24
3.2
24
76
16
72
44
8
7
39
1.64
39702--40030
42
7.9
42
71
19
192
44
6
6
42
1.56
39837--39951
18
5.9
18
79
15
113
42
6
8
41
1.62
39834--40030
80
2.4
81
84
8
260
43
6
7
43
1.58
39964--40463
2
248.5
2
62
21
86
45
5
4
45
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39993--40076
33
2.7
32
82
10
93
48
2
7
41
1.43
40011--40076
33
2.1
31
88
5
96
51
1
6
40
1.36
40129--40271
9
16.0
9
68
17
50
48
2
1
47
1.25
40130--40207
31
2.5
32
77
6
88
48
3
0
47
1.20
40155--40273
11
10.6
11
66
16
66
48
2
1
47
1.25
40315--40457
27
5.2
27
75
11
94
41
5
4
48
1.48
40343--40463
42
3.0
40
79
12
138
42
6
2
48
1.42
40487--41306
215
3.8
216
91
2
1239
30
12
7
50
1.67
41579--41617
16
2.4
16
82
0
51
38
23
20
17
1.93
45832--45875
14
3.0
14
93
6
70
18
13
13
54
1.71
46166--46206
14
3.2
14
74
25
54
4
17
24
53
1.63
46179--46218
20
2.0
20
90
0
62
7
15
20
57
1.61
46180--46219
10
4.0
10
86
0
53
7
12
20
60
1.56
66071--66100
2
15.0
2
100
0
60
50
0
0
50
1.00
77214--77274
24
2.5
24
81
5
79
13
11
21
54
1.70
78812--78878
16
4.3
16
86
3
84
11
10
16
61
1.57
78810--78870
32
1.9
32
89
0
95
9
13
19
57
1.63
82716--82748
17
1.9
17
93
0
57
72
9
3
15
1.21
82736--82802
25
2.6
25
81
13
75
67
5
2
23
1.27
82758--82814
15
3.7
15
76
2
51
70
3
1
24
1.13
82730--82814
23
3.7
23
78
9
68
67
5
3
23
1.29

Tables:   1

The End!