Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005162.1 Hibiscus syriacus cultivar Beakdansim tig00011645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27782

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1480--1552
33
2.3
31
90
6
112
15
36
23
24
1.93
5053--5218
85
2.0
85
92
0
278
45
7
6
40
1.58
7154--7196
16
2.6
17
81
3
52
62
0
0
37
0.95
7716--7750
5
7.2
5
96
3
63
60
0
0
40
0.97
7978--8021
3
14.7
3
100
0
88
34
0
0
65
0.93
9766--9812
20
2.6
18
83
16
53
31
0
4
63
1.13
13251--13326
3
25.7
3
91
2
127
35
1
0
63
1.03
13788--13822
18
1.9
18
100
0
70
80
2
17
0
0.84
14616--14656
20
2.0
21
86
13
59
29
0
4
65
1.13
14704--14744
20
2.0
21
85
4
57
36
2
2
58
1.24
25848--25898
1
51.0
1
84
0
66
92
0
7
0
0.40
25848--25899
15
3.5
15
89
5
79
90
0
9
0
0.46
25845--25898
23
2.3
23
93
6
92
90
0
9
0
0.45
25851--25898
19
2.4
19
93
6
78
91
0
8
0
0.41
26915--27668
78
9.5
80
86
9
1029
27
12
22
37
1.90
26915--27668
160
4.8
161
91
6
1178
27
12
22
37
1.90

Tables:   1

The End!