genome.fa.s5163.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005163.1 Hibiscus syriacus cultivar Beakdansim tig00011647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89611

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2316--2357	21	2.0	20	86	4	57	30	26	26	16	1.97
3186--3325	61	2.3	61	90	3	212	22	20	21	35	1.96
3184--3336	30	5.0	31	85	5	206	21	20	22	35	1.96
6268--6312	21	2.1	21	87	0	63	31	28	24	15	1.96
6917--6963	23	2.0	24	91	4	78	44	0	21	34	1.52
7141--7296	31	5.0	31	91	1	242	20	19	22	37	1.94
9814--9974	64	2.5	64	80	4	164	26	19	19	34	1.96
15151--15185	18	1.9	18	88	11	54	42	2	0	54	1.15
16997--17036	20	2.0	20	100	0	80	30	20	5	45	1.72
17434--17475	15	2.7	15	92	3	66	42	19	2	35	1.64
17434--17486	15	3.5	15	87	7	54	45	15	1	37	1.57
27735--27790	2	28.0	2	100	0	112	50	0	0	50	1.00
28664--28707	17	2.5	17	81	7	52	9	20	2	68	1.28
28756--28790	16	2.2	16	89	0	52	17	22	17	42	1.88
29416--29456	3	13.7	3	100	0	82	68	0	0	31	0.90
33090--33627	269	2.0	269	100	0	1076	27	21	19	31	1.97
38607--38634	2	14.0	2	100	0	56	50	0	0	50	1.00
39005--39065	21	2.8	22	80	7	63	27	1	21	49	1.59
43009--43054	21	2.2	21	96	0	83	60	0	0	39	0.97
43726--43758	14	2.3	15	85	15	52	51	0	0	48	1.00
43933--43987	25	2.4	23	80	16	69	34	9	10	45	1.71
44073--44844	73	10.5	74	86	3	1040	33	13	14	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44073--44844	147	5.2	146	87	2	1064	33	13	14	38	1.85
44074--44844	298	2.6	290	86	4	1078	33	13	14	38	1.85
45803--45844	21	2.0	21	90	0	66	38	16	14	30	1.89
47927--47976	3	16.7	3	95	0	91	34	2	0	64	1.05
49401--49447	14	3.5	13	80	13	51	40	2	2	55	1.24
60764--60802	16	2.4	16	86	4	51	79	0	17	2	0.84
61938--62125	83	2.3	83	96	0	340	29	13	21	35	1.92
62955--63828	116	7.6	113	87	4	1214	38	13	19	28	1.90
62955--63828	230	3.8	230	95	1	1506	38	13	19	28	1.90
64145--64194	3	16.7	3	95	0	91	34	2	0	64	1.05
65609--65655	14	3.5	13	80	13	51	40	2	2	55	1.24
72129--72175	17	2.6	17	83	6	58	38	17	12	31	1.87
72144--72177	17	2.0	17	94	0	59	38	17	11	32	1.86
73002--73047	15	3.1	15	93	0	83	32	13	15	39	1.85
75405--75687	45	6.0	45	84	10	379	39	7	22	31	1.81
75553--75662	57	1.9	55	89	8	168	39	8	21	30	1.83
76089--76150	21	3.0	21	97	0	115	27	19	25	27	1.99
78553--78603	26	2.0	26	84	7	68	78	0	7	13	0.96
78579--78607	13	2.1	14	93	6	51	82	0	3	13	0.79
86437--86489	19	2.7	19	82	2	61	35	11	22	30	1.89
86458--86509	20	2.6	20	84	6	61	26	15	25	32	1.95
88213--88293	36	2.2	36	95	0	144	16	37	13	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88213--88309	36	2.7	36	90	3	133	18	37	13	30	1.89

Tables:   1

The End!