genome.fa.s5164.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005164.1 Hibiscus syriacus cultivar Beakdansim tig00011649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39162

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3067--3235	84	2.0	84	100	0	338	14	33	15	37	1.87
4034--4111	26	2.9	26	81	7	68	43	2	1	52	1.23
4148--4195	15	3.2	15	74	11	53	50	2	0	47	1.12
4158--4234	39	2.0	39	87	5	111	54	1	2	41	1.22
4197--4262	30	2.2	30	83	5	80	54	4	1	39	1.30
9155--9231	37	2.1	38	90	4	122	50	1	1	46	1.17
9904--9948	6	7.5	6	100	0	90	33	51	15	0	1.44
10678--10825	19	7.1	21	67	18	96	37	21	19	20	1.94
10693--10850	21	7.6	21	69	13	112	35	24	19	20	1.96
10678--10844	42	4.0	42	92	1	266	36	22	19	21	1.95
10816--10883	33	2.1	33	91	0	109	32	30	19	17	1.95
10854--10896	21	2.0	21	95	0	77	30	32	18	18	1.95
11968--12013	20	2.3	19	85	10	65	54	8	17	19	1.68
14405--14469	21	3.1	21	80	6	69	40	15	29	15	1.88
16358--16405	19	2.6	19	90	3	71	31	2	10	56	1.45
16524--17892	200	6.9	199	96	1	2507	37	15	15	31	1.89
16524--17892	397	3.4	398	97	1	2523	37	15	15	31	1.89
19344--19441	6	16.3	6	79	0	70	36	7	35	20	1.80
19347--19437	42	2.2	42	89	0	137	35	7	36	20	1.82
19344--19441	18	5.4	18	78	0	88	36	7	35	20	1.80
20905--21248	184	1.9	184	93	0	589	35	14	16	33	1.89
23710--23774	25	2.6	25	75	0	76	35	9	12	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24060--24123	23	2.8	23	87	0	92	35	6	20	37	1.78
24060--24132	23	3.2	23	82	7	85	34	5	20	39	1.76
24399--24449	25	2.0	25	92	0	84	33	7	19	39	1.81
24743--24779	18	2.1	18	89	0	56	32	5	10	51	1.60
24735--24781	24	2.0	24	86	0	67	34	4	14	46	1.64
25036--25121	39	2.2	39	93	2	147	47	20	13	17	1.82
25525--25588	23	2.8	23	82	0	83	37	6	20	35	1.78
25525--25597	23	3.2	23	78	7	76	35	5	20	38	1.76
28084--28124	21	2.0	21	100	0	82	14	39	0	46	1.45
31774--31828	22	2.4	23	76	11	60	32	3	0	63	1.12
31757--31824	34	2.0	35	83	11	88	32	2	0	64	1.08
31841--31866	12	2.2	12	100	0	52	65	0	0	34	0.93
31820--31905	42	2.1	41	82	6	102	59	1	1	38	1.13
33948--34023	28	2.7	28	95	0	134	50	3	9	36	1.53
34161--34210	26	1.9	26	88	8	75	46	0	0	54	1.00
38401--38430	12	2.4	13	88	11	53	13	23	23	40	1.90
38405--38432	12	2.3	12	100	0	56	17	25	21	35	1.95

Tables:   1

The End!