genome.fa.s5165.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005165.1 Hibiscus syriacus cultivar Beakdansim tig00011653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156465

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3677--3721	19	2.4	19	84	0	54	20	20	6	53	1.67
10750--10782	11	2.8	12	86	4	50	84	0	12	3	0.72
10748--10805	15	4.1	14	75	20	50	77	0	13	8	0.98
14100--14133	13	2.6	13	85	0	50	32	0	35	32	1.58
19621--19654	13	2.6	13	85	0	50	32	0	35	32	1.58
30404--30480	33	2.4	33	80	6	86	35	3	11	49	1.58
30396--30820	197	2.2	196	84	3	550	38	6	10	44	1.64
32707--32783	33	2.4	33	80	6	86	35	3	11	49	1.58
32699--33123	197	2.2	196	85	2	566	38	6	10	44	1.65
35010--35086	33	2.4	33	80	6	86	35	3	11	49	1.58
35002--35424	195	2.2	195	85	3	564	38	6	10	44	1.64
37310--37386	33	2.4	33	80	6	86	35	3	11	49	1.58
37302--37727	197	2.2	197	85	1	577	38	6	10	44	1.64
39615--39691	33	2.4	33	80	6	86	35	3	11	49	1.58
39607--40031	197	2.2	197	84	3	561	38	6	10	44	1.65
46836--46878	20	2.2	20	86	0	59	20	2	20	55	1.54
46884--46976	46	2.0	46	89	0	141	38	6	22	32	1.80
49114--49144	16	1.9	16	93	0	53	16	3	38	41	1.64
51936--52084	22	6.6	23	74	16	102	45	2	5	46	1.40
51935--52080	26	6.2	26	72	27	148	45	2	5	45	1.40
51963--52080	43	2.7	43	100	0	236	46	2	5	45	1.38
62150--62302	80	1.9	77	82	8	184	40	8	5	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67115--67191	18	4.3	18	88	3	120	18	48	20	12	1.81
67115--67191	35	2.2	36	90	2	120	18	48	20	12	1.81
67181--67214	15	2.1	16	89	10	52	11	35	29	23	1.90
68494--68528	18	1.9	18	88	0	52	54	0	17	28	1.43
72303--72361	18	3.3	18	90	0	100	18	47	22	11	1.81
72351--72383	15	2.2	15	100	0	66	12	36	27	24	1.91
72348--72392	8	5.5	8	89	10	65	13	35	28	22	1.92
73665--73699	18	1.9	18	88	0	52	54	0	17	28	1.43
79051--79121	20	3.5	20	73	5	72	22	21	14	42	1.88
79037--79135	41	2.4	41	88	1	128	26	19	17	37	1.93
79077--79141	20	3.2	20	73	6	60	27	18	15	38	1.91
89962--89992	6	5.2	6	100	0	62	16	16	35	32	1.91
91080--91160	17	4.8	17	76	13	78	76	2	16	4	1.06
91081--91158	15	4.9	15	76	14	59	75	2	16	5	1.09
91130--91182	22	2.4	22	90	9	90	73	3	18	3	1.14
91083--91157	6	12.3	6	71	13	55	76	2	16	5	1.09
91100--91196	16	5.9	17	74	11	62	74	2	16	7	1.14
99054--99318	44	6.0	44	86	3	354	39	13	22	24	1.90
104684--104772	32	2.8	32	98	0	169	34	15	22	26	1.94
107827--108036	44	4.8	44	81	6	259	39	12	22	25	1.89
109285--109559	53	5.2	54	78	7	253	33	13	18	34	1.90
109285--109535	106	2.4	105	81	5	281	33	13	17	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113779--114288	261	2.0	252	96	3	939	35	13	20	30	1.91
115245--115271	11	2.5	11	100	0	54	37	0	40	22	1.54
116261--116515	53	5.0	51	74	10	209	31	13	16	38	1.87
116261--116517	103	2.5	105	82	8	287	31	13	16	38	1.87
123221--123396	89	2.0	88	87	1	253	42	12	21	24	1.87
123221--123396	44	4.0	44	87	1	235	42	12	21	24	1.87
124298--124438	21	6.7	21	84	9	164	23	39	19	17	1.92
124462--124571	20	5.5	20	84	0	139	19	34	19	27	1.95
124462--124571	40	2.8	40	88	0	166	19	34	19	27	1.95
124938--125007	34	2.1	34	84	5	90	34	15	25	24	1.95
127918--128016	21	4.8	20	79	13	110	25	34	21	19	1.96
127927--128114	20	9.5	20	73	13	106	24	32	20	22	1.98
128037--128123	20	4.3	20	89	0	111	18	29	22	28	1.97
129521--129581	23	2.5	24	84	5	70	40	22	16	19	1.90
135578--135634	23	2.5	23	75	11	62	35	19	24	21	1.96
137468--137588	40	3.0	40	92	0	206	34	24	16	23	1.95
139413--139907	247	2.0	247	100	0	990	33	19	12	33	1.90
142873--142927	22	2.7	20	81	10	65	29	9	29	32	1.88
143263--143765	117	4.3	116	86	2	598	33	12	18	35	1.88
143263--143766	58	8.7	58	88	2	625	33	12	18	35	1.88
150307--150703	57	6.9	58	85	6	479	34	11	18	34	1.88
152037--152078	15	2.6	16	85	7	59	69	0	11	19	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156329--156395	21	3.2	21	73	10	66	1	5	14	77	1.03

Tables:   1

The End!