genome.fa.s5166.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005166.1 Hibiscus syriacus cultivar Beakdansim tig00011654_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110631

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3961--3996	19	1.9	18	88	5	54	52	0	0	47	1.00
7702--7736	18	1.9	18	94	0	61	25	34	20	20	1.96
8440--8559	63	1.9	63	86	3	170	26	20	20	32	1.97
26624--26679	20	2.8	20	91	0	94	32	23	12	32	1.92
27132--27400	43	6.2	43	89	2	333	27	20	24	27	1.99
27175--27402	43	5.3	43	92	1	350	24	20	24	30	1.99
27150--27466	86	3.7	86	82	5	320	28	20	22	27	1.99
27172--27466	129	2.3	129	81	4	319	27	20	23	28	1.99
27614--27672	21	2.8	21	84	0	73	55	20	5	18	1.61
32228--32306	41	1.9	41	84	7	106	30	17	18	32	1.95
32275--32496	84	2.6	84	82	4	252	31	17	20	31	1.95
34396--34453	22	2.6	22	94	0	98	46	20	8	24	1.78
38926--38959	16	2.1	16	88	0	50	11	2	5	79	1.02
39086--39120	17	2.2	15	90	10	52	57	5	14	22	1.59
43204--43328	50	2.5	50	85	3	173	15	36	28	20	1.93
43482--43510	14	2.1	14	93	6	51	20	6	6	65	1.40
43585--43806	111	2.0	111	95	0	399	36	8	10	45	1.69
45979--46089	50	2.2	50	83	0	132	21	29	36	12	1.91
46367--46408	21	2.0	22	90	4	68	52	0	2	45	1.13
46358--46445	45	2.1	44	83	10	112	51	0	3	45	1.18
50096--50148	3	17.7	3	100	0	106	32	0	0	67	0.91
50687--50716	12	2.5	12	88	0	51	0	16	56	26	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50864--50931	30	2.3	30	87	5	93	27	8	8	54	1.61
50899--51136	116	2.0	116	82	4	282	30	11	5	52	1.62
52431--52503	36	2.0	36	82	10	87	49	4	1	45	1.29
53774--53814	2	20.5	2	100	0	82	48	0	0	51	1.00
58115--58200	11	7.5	11	70	21	52	75	3	9	11	1.15
58110--58148	18	2.1	19	90	4	62	76	0	12	10	1.01
58176--58218	10	4.2	10	82	14	52	79	2	0	18	0.85
58175--58221	11	4.2	11	83	10	60	78	2	0	19	0.85
58182--58223	20	2.0	22	86	9	61	76	4	0	19	0.96
58179--58228	20	2.6	20	73	17	52	74	4	0	22	0.99
58388--58414	3	9.0	3	100	0	54	66	0	0	33	0.92
58434--58482	22	2.2	21	80	16	55	67	2	10	20	1.30
58454--58554	52	1.9	52	82	9	125	71	0	7	19	1.17
58468--58527	14	4.3	13	75	24	52	75	0	5	20	0.99
59767--59863	2	48.5	2	97	0	185	50	1	0	48	1.07
60655--60861	110	1.9	110	90	0	333	21	18	24	36	1.95
65541--65573	15	2.1	16	88	5	50	63	3	21	12	1.41
71391--71415	13	1.9	13	100	0	50	16	16	40	28	1.89
71966--72043	26	3.0	26	76	12	70	67	3	10	17	1.34
72111--72148	17	2.1	19	85	9	53	78	0	10	10	0.95
72374--72432	18	3.2	19	75	20	63	57	3	1	37	1.25
72594--72655	32	1.9	32	96	0	115	48	4	24	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73430--73480	2	25.5	2	100	0	102	50	0	0	49	1.00
75025--75087	13	4.8	13	70	14	58	53	1	3	41	1.26
76206--76502	63	4.2	66	78	13	190	41	3	8	46	1.51
76244--76502	36	7.2	35	74	20	155	42	3	8	45	1.50
76281--76502	76	3.1	72	82	13	253	44	3	6	45	1.46
76314--76473	40	4.2	39	80	10	177	45	3	6	45	1.46
76550--76593	20	2.1	21	88	12	65	36	0	9	54	1.32
77765--77808	2	22.0	2	100	0	88	50	0	0	50	1.00
77816--77858	17	2.5	17	88	11	61	11	11	0	76	1.02
77858--77890	2	16.5	2	93	0	57	45	0	3	51	1.16
77930--78000	4	17.5	4	79	18	60	22	0	5	71	1.06
77930--77996	22	2.9	24	78	17	86	22	0	5	71	1.07
82083--82827	247	3.0	247	88	2	1028	31	24	19	24	1.98
82042--82862	331	2.5	333	86	3	1125	31	24	19	24	1.98
82042--82866	84	9.9	84	83	3	966	31	24	19	24	1.98
82052--82915	415	2.1	418	84	3	1076	32	23	19	24	1.98
83543--83786	36	6.7	37	75	13	197	41	4	9	45	1.55
83570--83852	76	3.8	73	82	7	275	42	3	8	45	1.51
85183--85225	17	2.5	17	88	11	61	11	11	0	76	1.02
85225--85263	2	19.5	2	94	0	69	46	0	2	51	1.14
85302--85365	4	15.5	4	80	18	53	23	0	6	70	1.10
85302--85367	22	2.8	24	78	17	84	22	0	6	71	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85306--85371	15	4.4	14	70	12	51	22	0	6	71	1.08
86225--86259	15	2.2	16	90	10	54	25	0	2	71	1.00
86470--86535	4	16.5	4	79	20	52	24	0	6	69	1.10
90075--90116	18	2.3	18	84	8	50	45	7	2	45	1.44
93252--93291	3	13.3	3	89	0	62	60	0	0	40	0.97
93786--93900	13	8.4	14	73	21	86	46	1	2	49	1.26
93821--93896	27	2.8	27	86	9	93	47	2	1	48	1.24
93821--93900	28	2.8	28	82	16	94	47	2	1	48	1.23
93968--94111	77	1.9	78	82	7	186	45	7	5	40	1.56
94080--94158	36	2.2	36	90	0	122	43	8	5	43	1.57
94137--94187	15	3.3	15	76	15	59	50	3	1	43	1.31
94010--94186	36	5.3	33	74	16	102	47	7	3	40	1.51
94169--94210	22	2.0	21	90	9	68	50	9	4	35	1.56
94198--94245	21	2.3	21	88	0	69	45	6	6	41	1.54
94116--94272	57	2.8	55	82	10	178	45	7	5	41	1.55
94274--94395	64	2.0	57	87	10	172	43	8	8	40	1.64
94351--94408	24	2.4	23	80	5	62	43	5	8	43	1.57
94386--94426	15	2.6	16	92	7	75	41	4	9	43	1.59
94377--94442	20	3.5	20	74	21	61	40	9	7	42	1.65
94654--94691	2	19.0	2	100	0	76	50	0	0	50	1.00
94734--94801	13	4.9	13	80	10	73	41	5	7	45	1.56
94734--94864	31	4.5	29	74	20	112	43	3	6	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94819--94854	18	1.9	19	94	5	65	47	0	5	47	1.25
94888--94920	9	3.8	9	88	8	50	36	6	3	54	1.41
95147--95194	2	24.0	2	95	0	87	47	0	0	52	1.00
95286--95335	16	3.2	16	75	11	50	26	10	2	62	1.38
97499--97556	27	2.1	28	81	9	66	29	1	5	63	1.25
103588--103648	16	3.8	16	88	0	95	57	19	13	9	1.63

Tables:   1

The End!