Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005167.1 Hibiscus syriacus cultivar Beakdansim tig00011657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73261

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137--202
24
2.8
24
90
6
100
25
12
21
40
1.88
312--364
3
18.0
3
77
11
56
66
1
3
28
1.20
320--366
23
2.0
24
91
4
78
63
4
6
25
1.36
649--891
125
1.9
132
84
9
331
24
20
29
25
1.99
1819--1864
9
5.8
8
92
7
60
4
6
0
89
0.60
16853--16886
2
17.5
2
93
6
61
50
0
0
50
1.00
20446--20540
42
2.2
42
94
1
163
26
13
23
36
1.92
20460--20529
18
3.6
17
70
27
50
25
15
21
37
1.93
34214--34249
16
2.2
16
95
0
63
27
22
5
44
1.75
42297--42348
19
2.7
19
93
0
86
34
28
13
23
1.92
42297--42572
20
13.9
19
78
8
124
36
24
15
23
1.94
42409--42580
40
4.3
40
83
5
213
39
23
16
20
1.92
42413--42580
20
8.4
20
81
5
178
39
23
16
20
1.92
42712--42754
22
2.0
22
95
0
77
23
39
13
23
1.90
42708--42765
22
2.7
21
86
5
73
20
41
12
25
1.87
43010--43063
20
2.7
19
80
8
63
16
16
20
46
1.84
45023--45064
12
3.5
12
83
0
57
28
2
2
66
1.16
45225--45326
21
4.9
21
74
0
87
20
37
20
21
1.95
45208--45326
42
2.8
43
82
5
145
22
34
20
22
1.97
46679--46818
66
2.2
62
87
7
194
30
0
17
50
1.51
46876--46953
20
3.9
20
93
0
120
39
23
16
20
1.92
47179--47265
39
2.2
39
95
0
156
17
13
20
48
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47575--47611
18
2.1
18
89
0
56
51
10
5
32
1.60
47787--47826
20
2.0
20
95
0
71
27
20
17
35
1.95
48015--48055
18
2.3
18
84
12
57
58
0
0
41
0.98
48325--48349
10
2.5
10
100
0
50
44
0
0
56
0.99
52659--52685
2
13.5
2
100
0
54
51
0
0
48
1.00
52861--52901
17
2.3
18
83
4
57
68
0
4
26
1.10
68144--68182
21
1.9
20
84
5
51
43
7
2
46
1.46
69829--69854
13
2.0
13
100
0
52
61
0
0
38
0.96
71404--71466
32
2.0
32
93
0
108
15
11
31
41
1.83

Tables:   1

The End!