genome.fa.s5169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005169.1 Hibiscus syriacus cultivar Beakdansim tig00011664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50609

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494--1224	198	3.7	195	79	9	714	39	14	15	30	1.87
1219--1379	87	1.9	85	92	2	268	34	13	11	40	1.81
2592--2658	21	3.2	21	66	16	57	46	7	14	31	1.73
5390--5419	14	2.1	15	93	6	53	13	40	0	46	1.43
5848--5875	14	2.0	14	100	0	56	21	0	28	50	1.49
8460--8485	12	2.2	12	100	0	52	23	7	7	61	1.49
9448--9490	21	2.0	21	90	0	68	18	51	6	23	1.70
10968--11007	20	2.0	20	90	9	64	47	2	0	50	1.14
12945--12989	21	2.0	23	87	8	67	24	8	2	64	1.34
16873--16925	21	2.5	21	96	0	97	24	13	30	32	1.93
21653--21753	42	2.4	41	80	3	121	31	22	21	23	1.98
21868--21967	41	2.4	41	75	6	103	31	24	23	22	1.99
21484--22605	214	5.2	214	94	1	1955	31	19	16	32	1.94
21484--22605	427	2.6	430	94	1	1995	31	19	16	32	1.94
22509--22637	42	3.1	42	88	1	179	31	20	22	25	1.98
22641--22816	36	4.9	35	77	12	119	21	16	22	40	1.91
22660--22826	36	4.6	36	84	7	162	20	16	23	38	1.92
22692--22826	36	3.7	35	87	7	173	21	14	23	40	1.91
23935--24183	125	2.0	123	80	7	281	23	27	16	32	1.96
29546--29602	21	2.7	21	83	5	71	17	19	17	45	1.86
31810--31866	26	2.2	26	93	0	96	63	15	0	21	1.31
34703--34751	20	2.5	20	100	0	98	51	6	0	42	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34710--34752	7	6.1	7	82	17	54	53	4	0	41	1.21
35296--35379	34	2.5	34	88	1	125	19	38	11	30	1.88
35740--35808	32	2.2	32	84	10	88	30	0	13	56	1.37
35752--35824	32	2.3	32	83	9	96	27	0	15	57	1.38
35797--35887	22	4.2	22	91	1	139	23	0	21	54	1.44
36939--37096	57	2.8	57	90	0	253	29	5	18	46	1.70
36927--37096	30	5.9	30	79	13	185	30	4	18	45	1.70
38403--38461	31	1.9	31	92	0	100	44	8	6	40	1.61
38761--38809	21	2.3	22	79	13	57	42	0	2	55	1.11
39751--39794	19	2.3	19	92	0	70	72	9	4	13	1.24
44188--44290	3	34.3	3	94	3	172	65	0	1	33	1.04

Tables:   1

The End!