Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000517.1 Hibiscus syriacus cultivar Beakdansim tig00000984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59407
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.33
Found at i:16614 original size:42 final size:41
Alignment explanation
Indices: 16542--16648 Score: 124
Period size: 42 Copynumber: 2.6 Consensus size: 41
16532 ACTATTTCCG
* * *
16542 AAGATAATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGACC
1 AAGATGATAAATCCTTCAGGCCATCAGTAAGTCTTTCGACC
* * * *
16583 ATGATGATTAAATCCTTCAGGTCATCTGTAAGTCTTTCGAGC
1 AAGATGA-TAAATCCTTCAGGCCATCAGTAAGTCTTTCGACC
* *
16625 AAGATGATAAGTCCTTCGGGCCAT
1 AAGATGATAAATCCTTCAGGCCAT
16649 TCATAAGACC
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 19 0.35
42 35 0.65
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (41 bp):
AAGATGATAAATCCTTCAGGCCATCAGTAAGTCTTTCGACC
Found at i:16693 original size:257 final size:252
Alignment explanation
Indices: 16193--17453 Score: 1337
Period size: 257 Copynumber: 5.1 Consensus size: 252
16183 AAAGAAATTC
*
16193 CAAAGTTTCTCATTTAAATATTTTCA-AGAAATTAAATTTTTGAAAAGTAAGAAAGCGATTTCCA
1 CAAAGTTTCTCATTT-AATATTTTCAGA-AAATGAAATTTTTGAAAAGTAAGAAAGCGATTTCCA
* * * * *
16257 AAGTTTCTTACTTAGTAGACTATTTTCGAAGATGACAAGTCCGTCGGACCATCAATAAGTCTTTC
64 AAGTTTTTTAC-TAGTAGACTA-TTTC-AAGAT--TAAGTCCTTCGGGCCATCAGTAAGTCTTTC
* * * **
16322 AAGCATGATGATTAAATTCTTCGGGTCATCTGTAAGTCTTTTGAGCAAGATGATAAGTCCTTTAG
124 GAGCATGATGATTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGG
* * * * * * *
16387 GCCATCCATAAGACCTTCAGGTAGGACGTTTTCACATGAATTAGAAAAATCAGAAAGTGATTTT
189 GCCATTCATAAGACCTTCAGGCAAGATGTTTTCACATGAATTTGAAAAATGAGAAAGCGATTTT
* *
16451 CAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATCTTTGAAAAGTAAGAAAGCGATTTCCAAA
1 CAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAA
16516 GTTTTTTACTTAGTAGACTATTTCCGAAGATAATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGA
66 GTTTTTTAC-TAGTAGACTATTT-C-AAGAT--TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGA
* *
16581 CCATGATGATTAAATCCTTCAGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGC
126 GCATGATGATTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGC
* **
16646 CATTCATAAGACCTTCAGGTAAGATGTTTTCACATGAATTTGAAAAATGAGAAAGAAATTTT
191 CATTCATAAGACCTTCAGGCAAGATGTTTTCACATGAATTTGAAAAATGAGAAAGCGATTTT
* * * *
16708 CAAACTTTCTCATTTAATTTTTTCAGAAAATGAAATATTTGAAAAGTAAGAAAGTGATTTCC-AA
1 CAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAA
* * *
16772 --TATTT-CT--T--AC---TT--AG--TAAGTCCTTCGGGCCATCAGTAAGTCTTTTTGAGGAT
66 GTTTTTTACTAGTAGACTATTTCAAGATTAAGTCCTTCGGGCCATCAGTAAGTC-TTTCGAGCAT
* * * *
16823 GATGATTAAATCCTTCGGGTCATCCGTAAGCCTTTCGAGCAATATGATAAGTCATTCGGGCCATA
130 GATGATTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCAT-
* *
16888 T-ATAAAACCTTCAGGCATGATGTTTTCACATGAATTTGAAAAATGAGAAAGCGATTTT
194 TCATAAGACCTTCAGGCAAGATGTTTTCACATGAATTTGAAAAATGAGAAAGCGATTTT
*
16946 CAAAGTTTCTCATTTAATATTTTTAGAAAAT---A------AAAAGTAAGAAAGCGATTTCC-AA
1 CAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAA
* *
17001 G--GTTT-CT--T--AC---TT--AG--TAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATG
66 GTTTTTTACTAGTAGACTATTTCAAGATTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
* * * *
17052 ATGATTAAACCCTTTGGGTCACCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCC
131 ATGATTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATTC
* * ** * * *
17117 ATAAGACCTTCGGGCAGGATGTTTTCATGTGATTTTTGAAAAATGAGAAAGTGATTTC
196 ATAAGACCTTCAGGCAAGATGTTTTCACATGA-ATTTGAAAAATGAGAAAGCGATTTT
* * * *
17175 CAAAGTTTCTCATTTAGTATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGTGGTTTTCAAA
1 CAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAA
* * * * * *
17240 GTTTCTTACCTAGTAGATTATTTCCAAAAATCGGTAAGTCATTCGGGCGATCAGTAAGCCTTTCG
66 GTTTTTTA-CTAGTAGACTATTT-C-AAGAT---TAAGTCCTTCGGGCCATCAGTAAGTCTTTCG
* * * * * *
17305 AGCATGATGATTTAATCCCTCGGGTCATCTGTTAGGCTTTGGAGCAAGATGATAAGTCCTTTGGG
125 AGCATGATGATTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGG
* * * *
17370 CCA-TCTATAAGACCTTCGGGCAAGATGCTTTCATATGGTATTTGTAAGAAAATGAGAAAGCGAT
190 CCATTC-ATAAGACCTTCAGGCAAGATGTTTTCACAT-GAATTTG--A-AAAATGAGAAAGCGAT
17434 TTT
250 TTT
*
17437 CAAAGTTTCTCTTTTAA
1 CAAAGTTTCTCATTTAA
17454 AGTAAAAAGA
Statistics
Matches: 864, Mismatches: 97, Indels: 80
0.83 0.09 0.08
Matches are distributed among these distances:
228 92 0.11
229 110 0.13
232 1 0.00
235 1 0.00
237 26 0.03
238 164 0.19
239 4 0.00
241 4 0.00
243 2 0.00
245 3 0.00
247 1 0.00
248 2 0.00
250 3 0.00
252 1 0.00
253 1 0.00
254 5 0.01
256 5 0.01
257 271 0.31
258 17 0.02
259 117 0.14
260 1 0.00
261 1 0.00
262 32 0.04
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (252 bp):
CAAAGTTTCTCATTTAATATTTTCAGAAAATGAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAA
GTTTTTTACTAGTAGACTATTTCAAGATTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
ATGATTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATTC
ATAAGACCTTCAGGCAAGATGTTTTCACATGAATTTGAAAAATGAGAAAGCGATTTT
Found at i:16976 original size:238 final size:235
Alignment explanation
Indices: 16549--17254 Score: 948
Period size: 238 Copynumber: 3.0 Consensus size: 235
16539 CCGAAGATAA
* * *
16549 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGACCATGATGATTAAATCCTTCAGGTCATCTGTAA
1 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCCGTAA
*
16614 GTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATTCATAAGACCTTCAGGTAAGATGTTTTCAC
66 GTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATT-ATAAGACCTTCAGGCAAGATGTTTTCAC
* *
16679 ATGAATTTGAAAAATGAGAAAGAAATTTTCAAACTTTCTCATTTAAT-TTTTTCAGAAAATGAAA
130 ATGAATTTGAAAAATGAGAAAGAGATTTTCAAAGTTTCTCATTTAATATTTTT-AGAAAATGAAA
16743 TATTTGAAAAGTAAGAAAGTGATTTCCAATATTTCTTACTTAG
194 TATTTGAAAAGTAAGAAAGTGATTTCCAA-ATTTCTTACTTAG
* *
16786 TAAGTCCTTCGGGCCATCAGTAAGTCTTTTTGAGGATGATGATTAAATCCTTCGGGTCATCCGTA
1 TAAGTCCTTCGGGCCATCAGTAAGTC-TTTCGAGCATGATGATTAAATCCTTCGGGTCATCCGTA
* * * * *
16851 AGCCTTTCGAGCAATATGATAAGTCATTCGGGCCATATATAAAACCTTCAGGCATGATGTTTTCA
65 AGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCAT-TATAAGACCTTCAGGCAAGATGTTTTCA
*
16916 CATGAATTTGAAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAATATTTTTAG---A--AAA
129 CATGAATTTGAAAAATGAGAAAGAGATTTTCAAAGTTTCTCATTTAATATTTTTAGAAAATGAAA
* *
16976 TA----AAAAGTAAGAAAGCGATTTCCAAGGTTTCTTACTTAG
194 TATTTGAAAAGTAAGAAAGTGATTTCCAA-ATTTCTTACTTAG
* * *
17015 TAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAACCCTTTGGGTCA-CCTGTA
1 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCC-GTA
* * *
17079 AGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCA
65 AGTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCAT-TATAAGACCTTCAGGCAAGATGTTTTCA
** * * * * *
17144 TGTGATTTTTGAAAAATGAGAAAGTGATTTCCAAAGTTTCTCATTTAGTATTTTCAGAAAATGAA
129 CATGA-ATTTGAAAAATGAGAAAGAGATTTTCAAAGTTTCTCATTTAATATTTTTAGAAAATGAA
* * * *
17209 ATTTTTGAAAAGTAAGAAAGTGGTTTTCAAAGTTTCTTACCTAG
193 ATATTTGAAAAGTAAGAAAGTGATTTCCAAA-TTTCTTACTTAG
17253 TA
1 TA
17255 GATTATTTCC
Statistics
Matches: 411, Mismatches: 43, Indels: 29
0.85 0.09 0.06
Matches are distributed among these distances:
227 2 0.00
228 91 0.22
229 105 0.26
232 1 0.00
233 5 0.01
234 4 0.01
235 1 0.00
237 26 0.06
238 170 0.41
239 6 0.01
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (235 bp):
TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCCGTAA
GTCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATTATAAGACCTTCAGGCAAGATGTTTTCACA
TGAATTTGAAAAATGAGAAAGAGATTTTCAAAGTTTCTCATTTAATATTTTTAGAAAATGAAATA
TTTGAAAAGTAAGAAAGTGATTTCCAAATTTCTTACTTAG
Found at i:17498 original size:23 final size:24
Alignment explanation
Indices: 17452--17516 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 24
17442 TTTCTCTTTT
17452 AAAGTAAAAAGAAAAAAATAATAA
1 AAAGTAAAAAGAAAAAAATAATAA
* *
17476 AAAGAAAAAAAATAAAATAATAATAA
1 AAAGTAAAAAGA-AAAA-AATAATAA
*
17502 AAAGATAAAGAGAAA
1 AAAG-TAAAAAGAAA
17517 GAATAAACAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
24 10 0.30
25 4 0.12
26 14 0.42
27 5 0.15
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.12
Consensus pattern (24 bp):
AAAGTAAAAAGAAAAAAATAATAA
Found at i:19136 original size:16 final size:17
Alignment explanation
Indices: 19112--19148 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
19102 TTTAGGTGTG
19112 TTTAGTTTAGG-TTTAT
1 TTTAGTTTAGGTTTTAT
*
19128 TTTATTTTAGGTTTTAT
1 TTTAGTTTAGGTTTTAT
19145 TTTA
1 TTTA
19149 AAAGGTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.68
Consensus pattern (17 bp):
TTTAGTTTAGGTTTTAT
Found at i:19145 original size:17 final size:16
Alignment explanation
Indices: 19097--19148 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
19087 CGGCCATATG
* *
19097 TTTAGTTTAGGTGT-G
1 TTTAGTTTAGGTTTAT
19112 TTTAGTTTAGGTTTAT
1 TTTAGTTTAGGTTTAT
*
19128 TTTATTTTAGGTTTTAT
1 TTTAGTTTAGG-TTTAT
19145 TTTA
1 TTTA
19149 AAAGGTTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
15 13 0.41
16 10 0.31
17 9 0.28
ACGTcount: A:0.17, C:0.00, G:0.19, T:0.63
Consensus pattern (16 bp):
TTTAGTTTAGGTTTAT
Found at i:22593 original size:29 final size:29
Alignment explanation
Indices: 22556--22647 Score: 166
Period size: 29 Copynumber: 3.2 Consensus size: 29
22546 TGTACGTGGG
*
22556 TTTAAGGTGTACCCGACGTTAATTGTGGC
1 TTTAAGGTGTACCCGACGTTAATTGAGGC
22585 TTTAAGGTGTACCCGACGTTAATTGAGGC
1 TTTAAGGTGTACCCGACGTTAATTGAGGC
*
22614 TTTAAGGTATACCCGACGTTAATTGAGGC
1 TTTAAGGTGTACCCGACGTTAATTGAGGC
22643 TTTAA
1 TTTAA
22648 TTGAACGTTG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (29 bp):
TTTAAGGTGTACCCGACGTTAATTGAGGC
Found at i:26451 original size:11 final size:11
Alignment explanation
Indices: 26435--26499 Score: 50
Period size: 11 Copynumber: 6.1 Consensus size: 11
26425 TGAGGGTGAC
26435 ATACGAGCCAT
1 ATACGAGCCAT
26446 ATACGAGCC--
1 ATACGAGCCAT
26455 ATACGAGCCA-
1 ATACGAGCCAT
**
26465 ATGGGGAG-CAT
1 AT-ACGAGCCAT
26476 GCA-ACGAGCCAT
1 --ATACGAGCCAT
26488 ATACGAGCCAT
1 ATACGAGCCAT
26499 A
1 A
26500 CGAGCCAATG
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
9 9 0.21
10 5 0.12
11 25 0.58
12 3 0.07
13 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.25, T:0.14
Consensus pattern (11 bp):
ATACGAGCCAT
Found at i:26484 original size:42 final size:42
Alignment explanation
Indices: 26437--26520 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
26427 AGGGTGACAT
26437 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
1 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
26479 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
1 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
26521 GGAATAGAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.26, G:0.29, T:0.12
Consensus pattern (42 bp):
ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
Found at i:26542 original size:28 final size:28
Alignment explanation
Indices: 26501--26559 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
26491 CGAGCCATAC
*
26501 GAGCCAATGGGGAGCATGCAGGAATAGA
1 GAGCCAATGAGGAGCATGCAGGAATAGA
26529 GAGCCAATGAGGAGCATGCAGGAATAGA
1 GAGCCAATGAGGAGCATGCAGGAATAGA
26557 GAG
1 GAG
26560 GTCGCCATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.14, G:0.39, T:0.10
Consensus pattern (28 bp):
GAGCCAATGAGGAGCATGCAGGAATAGA
Found at i:26608 original size:29 final size:29
Alignment explanation
Indices: 26558--26657 Score: 166
Period size: 29 Copynumber: 3.4 Consensus size: 29
26548 AGGAATAGAG
* *
26558 AGGTCGCCATGCAG-CCTAGGCGACCTTGT
1 AGGTCGCCATGTAGTCC-CGGCGACCTTGT
26587 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
26616 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
26645 AGGTCGCCATGTA
1 AGGTCGCCATGTA
26658 CATGCACAGC
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
29 66 0.97
30 2 0.03
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.23
Consensus pattern (29 bp):
AGGTCGCCATGTAGTCCCGGCGACCTTGT
Found at i:26744 original size:27 final size:27
Alignment explanation
Indices: 26712--26764 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
26702 CCTACAGCTC
26712 CCAATGCATGCATGTGAACCATTTGAG
1 CCAATGCATGCATGTGAACCATTTGAG
26739 CCAATGCATGCATGTGAACCATTTGA
1 CCAATGCATGCATGTGAACCATTTGA
26765 TTATTGGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (27 bp):
CCAATGCATGCATGTGAACCATTTGAG
Found at i:26904 original size:23 final size:23
Alignment explanation
Indices: 26876--26921 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26866 AAAAGAAAGA
26876 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGGGAGAAGAGATTGCAG
26899 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGGGAGAAGAGATTGCAG
26922 TCGAGAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.39, T:0.09
Consensus pattern (23 bp):
AAGAAAGGGAGAAGAGATTGCAG
Found at i:26936 original size:25 final size:23
Alignment explanation
Indices: 26876--26936 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
26866 AAAAGAAAGA
**
26876 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGAAAGAAGAGATTGCAG
**
26899 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGAAAGAAGAGATTGCAG
*
26922 TCGAGAAAGAAAGAA
1 --AAGAAAGAAAGAA
26937 AGGGAGAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 23 0.70
25 10 0.30
ACGTcount: A:0.51, C:0.05, G:0.36, T:0.08
Consensus pattern (23 bp):
AAGAAAGAAAGAAGAGATTGCAG
Found at i:26950 original size:21 final size:21
Alignment explanation
Indices: 26926--26978 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
26916 TTGCAGTCGA
26926 GAAAGAAAGAAAGGGAGAAAG
1 GAAAGAAAGAAAGGGAGAAAG
26947 GAAAGAAAGAAAGGGAGAAAG
1 GAAAGAAAGAAAGGGAGAAAG
*
26968 GAAAGTAAGAA
1 GAAAGAAAGAA
26979 GAAGAAAGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (21 bp):
GAAAGAAAGAAAGGGAGAAAG
Found at i:26972 original size:17 final size:16
Alignment explanation
Indices: 26924--26955 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
26914 GATTGCAGTC
26924 GAGAAAGAAAGAAAGG
1 GAGAAAGAAAGAAAGG
26940 GAGAAAGGAAAGAAAG
1 GAGAAA-GAAAGAAAG
26956 AAAGGGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (16 bp):
GAGAAAGAAAGAAAGG
Found at i:27158 original size:41 final size:41
Alignment explanation
Indices: 27113--27201 Score: 92
Period size: 41 Copynumber: 2.2 Consensus size: 41
27103 TATATGATTG
* *
27113 TTAGTTTAAG-TT-ATAGTATACATAAATTAAAAATTATTTAA
1 TTAGTTTAAGTTTGATAGT-TACAT-AATTAAAAAATAATTAA
* * * *
27154 TTAGTATATGTTTGATAGTTATATAGTTAAAAAATAATTAA
1 TTAGTTTAAGTTTGATAGTTACATAATTAAAAAATAATTAA
27195 TTAGTTT
1 TTAGTTT
27202 GTTTTGTTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
41 28 0.72
42 6 0.15
43 5 0.13
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.46
Consensus pattern (41 bp):
TTAGTTTAAGTTTGATAGTTACATAATTAAAAAATAATTAA
Found at i:27245 original size:46 final size:48
Alignment explanation
Indices: 27182--27273 Score: 136
Period size: 46 Copynumber: 2.0 Consensus size: 48
27172 TTATATAGTT
*
27182 AAAAAATAATTAATTAGTTTGT-TTTGTT-AATAGTT-AGTTATATAA
1 AAAAAATAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATATAA
*
27227 AAAAAATTATTTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATAT
1 AAAAAA-TAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATAT
27274 TTGTTTGTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
45 6 0.15
46 15 0.37
47 5 0.12
48 7 0.17
49 8 0.20
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (48 bp):
AAAAAATAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATATAA
Found at i:27350 original size:32 final size:33
Alignment explanation
Indices: 27314--27390 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 33
27304 TTAGTTAGTA
27314 AGTTTATTAGTAG-TATA-TTATAATGAAAA-AAT
1 AGTTTATTAGTAGTTATAGTTAT-AT-AAAAGAAT
*
27346 AGTTTATTAGTTAGTTTTAGTTATATAAAAGAAT
1 AGTTTATTAG-TAGTTATAGTTATATAAAAGAAT
*
27380 ATTTTATTAGT
1 AGTTTATTAGT
27391 TGTTTAAGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
32 10 0.26
33 8 0.21
34 17 0.44
35 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (33 bp):
AGTTTATTAGTAGTTATAGTTATATAAAAGAAT
Found at i:27468 original size:16 final size:16
Alignment explanation
Indices: 27436--27482 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
27426 TTTAAAAAGT
*
27436 TTAGTTTGTTAGT-TTA
1 TTAGTTTATTA-TATTA
27452 TTAGTTTATTATATTA
1 TTAGTTTATTATATTA
*
27468 TAAG-TTATTATATTA
1 TTAGTTTATTATATTA
27483 AAGTTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.60
Consensus pattern (16 bp):
TTAGTTTATTATATTA
Found at i:27477 original size:15 final size:14
Alignment explanation
Indices: 27457--27487 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
27447 GTTTATTAGT
27457 TTATTATATTATAAG
1 TTATTATATTA-AAG
27472 TTATTATATTAAAG
1 TTATTATATTAAAG
27486 TT
1 TT
27488 TAGTGTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTATTATATTAAAG
Found at i:29657 original size:17 final size:17
Alignment explanation
Indices: 29635--29667 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
29625 CAATGATTTT
*
29635 TAGTATCAAATCATTAC
1 TAGTATCAAATAATTAC
29652 TAGTATCAAATAATTA
1 TAGTATCAAATAATTA
29668 AATATTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (17 bp):
TAGTATCAAATAATTAC
Found at i:29849 original size:35 final size:37
Alignment explanation
Indices: 29768--29854 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 37
29758 TTAGTATTCT
* * *
29768 ATAATTATTAGT-AATAATTATTAAATCATTAGTATTAA
1 ATAATTATTA-TAAATAATTACTAAATCAATAG-ACTAA
*
29806 ATCATTATTATAAATAATTACTAAAT-AATA-ACTAA
1 ATAATTATTATAAATAATTACTAAATCAATAGACTAA
29841 ATAATTATTATAAA
1 ATAATTATTATAAA
29855 ATCATTATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
35 17 0.40
37 4 0.09
38 22 0.51
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (37 bp):
ATAATTATTATAAATAATTACTAAATCAATAGACTAA
Found at i:29875 original size:12 final size:13
Alignment explanation
Indices: 29784--30135 Score: 153
Period size: 14 Copynumber: 26.1 Consensus size: 13
29774 ATTAGTAATA
29784 ATTATTAAATCATT
1 ATTA-TAAATCATT
*
29798 AGTATTAAATCATT
1 ATTA-TAAATCATT
29812 ATTATAAAT-A--
1 ATTATAAATCATT
29822 ATTACTAAAT-A--
1 ATTA-TAAATCATT
* *
29833 ATAACTAAATAATT
1 ATTA-TAAATCATT
29847 ATTATAAAATCATT
1 ATTAT-AAATCATT
*
29861 ATTAT-AATGATT
1 ATTATAAATCATT
29873 ATTATCAAATCATT
1 ATTAT-AAATCATT
29887 ACTAAATCATCAAATCATT
1 A-T---T-AT-AAATCATT
*
29906 AAATATTTAAATCATT
1 --AT-TATAAATCATT
29922 A-T-TAAATCATT
1 ATTATAAATCATT
* *
29933 TTTAT-AATGATT
1 ATTATAAATCATT
29945 ATTACTAAATCATT
1 ATTA-TAAATCATT
* *
29959 ATTAT-GATGATT
1 ATTATAAATCATT
29971 ATTATCAAATCATT
1 ATTAT-AAATCATT
* *
29985 ACTAT-AATGATT
1 ATTATAAATCATT
29997 ATTATCAAATCATT
1 ATTAT-AAATCATT
*
30011 ACTAAATCGTCAAATCATT
1 A-T---T-AT-AAATCATT
*
30030 AAATATTTAAATCATT
1 --AT-TATAAATCATT
30046 A-T-TAAATCATT
1 ATTATAAATCATT
* *
30057 TTTAT-AATGATT
1 ATTATAAATCATT
30069 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
30083 ATTAT-AATGATT
1 ATTATAAATCATT
30095 ATTATCAAATCATT
1 ATTAT-AAATCATT
* *
30109 ACTAT-AATGATT
1 ATTATAAATCATT
30121 ATTATCAAATCATT
1 ATTAT-AAATCATT
30135 A
1 A
30136 CTAAATCATC
Statistics
Matches: 269, Mismatches: 32, Indels: 74
0.72 0.09 0.20
Matches are distributed among these distances:
10 4 0.01
11 33 0.12
12 76 0.28
13 12 0.04
14 93 0.35
15 2 0.01
16 16 0.06
17 2 0.01
18 6 0.02
19 21 0.08
20 2 0.01
21 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (13 bp):
ATTATAAATCATT
Found at i:29882 original size:26 final size:26
Alignment explanation
Indices: 29784--30135 Score: 249
Period size: 26 Copynumber: 14.2 Consensus size: 26
29774 ATTAGTAATA
* * *
29784 ATTATTA-AATCATTAGTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
* *
29809 ATTATTATAA--ATAATTA-CTAAATA
1 ATTATTATAATGATTATTATC-AAATC
* * * *
29833 ATAACTA-AATAATTATTATAAAATC
1 ATTATTATAATGATTATTATCAAATC
29858 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* * * * * *
29884 ATTACTA-AATCATCA-AATC-ATTA
1 ATTATTATAATGATTATTATCAAATC
* * *
29907 AATATT-TAA--ATCATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
*
29930 ATTTTTATAATGATTATTA-CTAAATC
1 ATTATTATAATGATTATTATC-AAATC
*
29956 ATTATTATGATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
*
29982 ATTACTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* * * * *
30008 ATTACTA-AATCG-TCA-AATC-ATTA
1 ATTATTATAAT-GATTATTATCAAATC
* * *
30031 AATATT-TAA--ATCATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
*
30054 ATTTTTATAATGATTATTA-CTAAATC
1 ATTATTATAATGATTATTATC-AAATC
30080 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
*
30106 ATTACTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
30132 ATTA
1 ATTA
30136 CTAAATCATC
Statistics
Matches: 254, Mismatches: 49, Indels: 47
0.73 0.14 0.13
Matches are distributed among these distances:
21 7 0.03
22 4 0.02
23 30 0.12
24 26 0.10
25 33 0.13
26 152 0.60
27 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (26 bp):
ATTATTATAATGATTATTATCAAATC
Found at i:30008 original size:124 final size:124
Alignment explanation
Indices: 29800--30169 Score: 629
Period size: 124 Copynumber: 3.0 Consensus size: 124
29790 AAATCATTAG
* * * * * * *
29800 TATTAAATCATTATTATAA--ATAATTACTAAATAATAACTA-AATAATTATTATAAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
*
29862 TTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
*
29921 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATGATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
*
29986 CTATAATGATTATTATCAAATCATTACTAAATCGTCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
30045 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
30110 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
30169 T
1 T
30170 TTTATAATGA
Statistics
Matches: 234, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
121 18 0.08
123 17 0.07
124 199 0.85
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (124 bp):
TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
Found at i:33061 original size:26 final size:24
Alignment explanation
Indices: 33003--33061 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 24
32993 CTAATAAACC
*
33003 TAATAATGATTTGATAATTACTAT
1 TAATAATGATTTGATAATTAATAT
*
33027 TAATCTAATGATTTGATATTTAATGATT
1 TAA--TAATGATTTGATAATTAAT-A-T
33055 TAATAAT
1 TAATAAT
33062 AATATGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 3 0.10
26 21 0.72
27 1 0.03
28 4 0.14
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.47
Consensus pattern (24 bp):
TAATAATGATTTGATAATTAATAT
Found at i:33910 original size:28 final size:30
Alignment explanation
Indices: 33870--33932 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
33860 ATTTTTTATA
*
33870 TAATATAATATATAACTTAAACTAATAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
33900 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
33928 TAATA
1 TAATA
33933 ATTTATACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 25 0.78
29 1 0.03
30 6 0.19
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:33939 original size:28 final size:28
Alignment explanation
Indices: 33874--33939 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
33864 TTTATATAAT
*
33874 ATAATATATAACTTAAACTAATAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
33902 AT-ATAATATAACTTAAACTAACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
33930 ATAATTTATA
1 ATAATATATA
33940 CTAACAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 30 0.88
29 2 0.06
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:33942 original size:21 final size:21
Alignment explanation
Indices: 33909--33957 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
33899 CTAATATAAT
33909 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
33930 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
33951 ATTAACT
1 A-TAACT
33958 AGATTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:34441 original size:25 final size:25
Alignment explanation
Indices: 34413--34492 Score: 66
Period size: 25 Copynumber: 3.4 Consensus size: 25
34403 ACACCGTTCG
34413 ACGTGCATGGCCATGCACAGTTCCC
1 ACGTGCATGGCCATGCACAGTTCCC
* *
34438 ACGT-C----CCATGCACAGCAT-GC
1 ACGTGCATGGCCATGCACAG-TTCCC
34458 ATC-TGCATGGCCATGCACAGTTCCC
1 A-CGTGCATGGCCATGCACAGTTCCC
34483 ACGTCGCATG
1 ACGT-GCATG
34493 CACAGCATGC
Statistics
Matches: 41, Mismatches: 4, Indels: 19
0.64 0.06 0.30
Matches are distributed among these distances:
20 13 0.32
21 3 0.07
24 3 0.07
25 17 0.41
26 5 0.12
ACGTcount: A:0.21, C:0.36, G:0.23, T:0.20
Consensus pattern (25 bp):
ACGTGCATGGCCATGCACAGTTCCC
Found at i:34466 original size:45 final size:45
Alignment explanation
Indices: 34416--34504 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
34406 CCGTTCGACG
34416 TGCATGGCCATGCACAGTTCCCACGTCCCATGCACAGCATGCATC
1 TGCATGGCCATGCACAGTTCCCACGTCCCATGCACAGCATGCATC
*
34461 TGCATGGCCATGCACAGTTCCCACGTCGCATGCACAGCATGCAT
1 TGCATGGCCATGCACAGTTCCCACGTCCCATGCACAGCATGCAT
34505 GCATGCATCC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.22, C:0.36, G:0.21, T:0.20
Consensus pattern (45 bp):
TGCATGGCCATGCACAGTTCCCACGTCCCATGCACAGCATGCATC
Found at i:34623 original size:28 final size:29
Alignment explanation
Indices: 34591--34654 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
34581 GCCCTGATGC
***
34591 CATGGCGACCTTGGAGGTCGCC-GGATTG
1 CATGGCGACCTCCAAGGTCGCCTGGATTG
34619 CATGGCGACCTCCAAGGTCGCCTGGATTG
1 CATGGCGACCTCCAAGGTCGCCTGGATTG
34648 CATGGCG
1 CATGGCG
34655 TCCTATGGCG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 19 0.59
29 13 0.41
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (29 bp):
CATGGCGACCTCCAAGGTCGCCTGGATTG
Found at i:36865 original size:59 final size:60
Alignment explanation
Indices: 36781--36909 Score: 143
Period size: 59 Copynumber: 2.2 Consensus size: 60
36771 AAACATAGAA
* * * * * *
36781 ACATACCTACACTAATATAATTATGTGTTTATTGTTATGTATCAAGATATT-AAAGATGT
1 ACATACTTACACCAATATAAGTATGTGTTAATTGTTAGGTACCAAGATATTGAAAGATGT
* * * * **
36840 ACATATTTACACCAATGTAAGTATGTGTTAATTTTTGGGTACCAAGATATTGAGTGATGT
1 ACATACTTACACCAATATAAGTATGTGTTAATTGTTAGGTACCAAGATATTGAAAGATGT
36900 ACATACTTAC
1 ACATACTTAC
36910 TCTGGTACAA
Statistics
Matches: 56, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
59 41 0.73
60 15 0.27
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.39
Consensus pattern (60 bp):
ACATACTTACACCAATATAAGTATGTGTTAATTGTTAGGTACCAAGATATTGAAAGATGT
Found at i:48521 original size:27 final size:29
Alignment explanation
Indices: 48491--48544 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
48481 AATTAATCAT
48491 AAAAAT-AAACGT-AATAAAACACATACC
1 AAAAATAAAACGTGAATAAAACACATACC
*
48518 AAAAATAAAACTTGAATAAAACACATA
1 AAAAATAAAACGTGAATAAAACACATA
48545 TATAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 6 0.25
28 5 0.21
29 13 0.54
ACGTcount: A:0.65, C:0.15, G:0.04, T:0.17
Consensus pattern (29 bp):
AAAAATAAAACGTGAATAAAACACATACC
Found at i:52505 original size:2 final size:2
Alignment explanation
Indices: 52492--52532 Score: 73
Period size: 2 Copynumber: 20.0 Consensus size: 2
52482 TAAGACCATG
52492 TA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52533 AATAGCATGC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:56255 original size:15 final size:15
Alignment explanation
Indices: 56237--56270 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
56227 TTTGGGATAT
56237 TTTTTTAGCTTTTTC
1 TTTTTTAGCTTTTTC
**
56252 TTTTTTCTCTTTTTC
1 TTTTTTAGCTTTTTC
56267 TTTT
1 TTTT
56271 ATTTTTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTTTAGCTTTTTC
Found at i:57258 original size:15 final size:15
Alignment explanation
Indices: 57225--57259 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
57215 GATTACGATT
*
57225 AAGATTAAGACAATG
1 AAGATTAAGACAATA
*
57240 AAGATTAAGACACTA
1 AAGATTAAGACAATA
57255 AAGAT
1 AAGAT
57260 AAACGGTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.54, C:0.09, G:0.17, T:0.20
Consensus pattern (15 bp):
AAGATTAAGACAATA
Done.