genome.fa.s5170.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005170.1 Hibiscus syriacus cultivar Beakdansim tig00011668_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84127

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8029--8132	46	2.3	46	88	6	158	31	20	20	27	1.97
8751--8815	26	2.5	26	77	5	60	60	12	4	23	1.51
10527--10560	17	2.0	17	100	0	68	29	23	29	17	1.97
10544--10635	45	2.1	44	83	6	114	26	17	25	31	1.97
14443--14485	20	2.2	20	83	8	52	37	2	2	58	1.24
16508--16566	18	3.3	18	95	0	100	23	15	37	23	1.93
17434--17469	16	2.1	18	90	10	58	47	2	0	50	1.15
17461--17509	25	2.0	25	84	4	64	44	2	2	51	1.24
23891--24066	29	6.2	29	77	11	132	50	14	1	34	1.53
31216--31393	29	6.2	28	76	13	150	45	15	1	37	1.57
33250--33309	31	1.9	31	83	6	77	33	18	8	40	1.80
34976--35028	26	2.0	26	100	0	106	33	32	7	26	1.84
45440--45514	31	2.4	31	90	0	114	28	32	28	12	1.92
46610--46644	17	2.1	17	100	0	70	20	11	22	45	1.82
49974--50029	21	2.7	21	83	5	69	50	1	3	44	1.29
49978--50030	10	5.1	10	73	8	52	49	1	3	45	1.31
50247--50299	23	2.3	23	80	3	61	37	3	3	54	1.36
51238--51289	20	2.6	20	96	0	95	38	26	13	21	1.90
51280--51377	21	4.8	20	71	6	70	35	21	20	22	1.96
51345--51538	20	9.6	20	76	8	76	35	25	19	19	1.95
51341--51538	40	5.0	39	81	4	200	35	26	19	19	1.95
51345--51537	60	3.2	60	83	0	251	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51919--51989	33	2.2	33	92	0	115	11	22	18	47	1.80
52110--52164	14	3.6	14	73	21	56	41	23	25	9	1.83
52110--52180	33	2.2	33	94	0	124	43	25	22	8	1.81
52198--52287	14	5.7	14	74	23	81	8	25	23	42	1.83
52181--52295	33	3.5	33	93	0	203	9	23	20	46	1.80
52176--52288	19	6.8	18	71	23	79	9	23	22	44	1.82
53992--54556	185	3.0	186	98	0	1107	22	12	18	46	1.83
53992--54556	93	6.1	93	99	0	1107	22	12	18	46	1.83
54600--54728	19	7.3	19	73	17	116	45	27	17	9	1.78
54636--54728	33	2.8	32	91	4	150	46	27	18	7	1.76
54600--54728	52	2.5	52	73	14	131	45	27	17	9	1.78
54724--54858	19	7.6	19	74	16	119	11	18	23	45	1.82
54746--54802	14	3.7	14	77	20	60	10	21	22	45	1.82
54729--54821	33	2.8	33	93	0	159	11	19	21	47	1.81
56780--56815	14	2.6	14	95	0	63	33	0	22	44	1.53
56922--57023	19	5.6	19	84	13	151	44	17	23	14	1.86
57052--57358	19	17.4	19	80	16	376	14	20	18	46	1.83
57052--57291	71	3.4	71	86	11	373	14	20	17	47	1.83
57014--57358	142	2.5	137	90	5	516	14	20	18	46	1.84
57052--57330	52	5.2	52	93	4	388	14	21	17	46	1.83
59489--59535	24	2.0	24	87	8	69	38	21	14	25	1.92
60218--60586	20	18.5	20	86	4	458	20	18	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79141--79166	12	2.2	12	100	0	52	19	7	23	50	1.73

Tables:   1

The End!