Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005171.1 Hibiscus syriacus cultivar Beakdansim tig00011669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61850

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3713--3781
19
3.8
19
75
9
72
10
15
24
49
1.76
5477--5541
22
2.9
22
93
2
103
27
24
20
27
1.99
6960--7011
19
2.7
19
96
0
95
25
34
15
25
1.95
9304--9693
30
13.0
29
71
10
132
36
6
2
54
1.39
9352--9472
31
4.0
32
81
11
107
38
6
0
54
1.32
9471--9541
29
2.4
29
85
2
88
39
8
2
49
1.48
9731--9840
29
3.7
28
81
15
107
50
1
6
40
1.38
9830--9876
18
2.6
18
86
3
58
38
0
12
48
1.41
10594--10728
69
2.0
69
98
0
261
20
22
30
27
1.98
11052--11124
25
2.8
26
76
12
71
71
0
5
23
1.07
12359--12414
9
6.3
9
80
8
53
73
0
1
25
0.93
12361--12404
3
14.7
3
86
9
63
70
0
2
27
0.99
12464--12552
30
3.0
30
83
3
117
49
8
2
39
1.47
12526--12720
38
5.1
37
77
11
182
44
7
3
45
1.46
12589--12733
76
1.9
77
87
7
215
45
7
3
43
1.49
13293--14303
165
6.1
165
96
1
1780
22
21
26
29
1.99
13293--14303
328
3.1
328
96
0
1799
22
21
26
29
1.99
17660--17704
19
2.4
19
92
3
74
66
8
13
11
1.44
19062--19209
69
2.1
69
100
0
296
20
23
31
25
1.98
19533--19605
25
2.8
26
76
12
71
71
0
5
23
1.07
20838--20885
17
2.8
16
84
9
60
72
0
2
25
0.95
20839--20880
22
1.9
22
90
9
68
76
0
2
21
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20828--20889
28
2.2
28
86
11
83
77
0
3
19
0.90
20841--20889
25
2.0
24
80
15
55
75
0
2
22
0.90
20939--21027
30
3.0
30
83
3
117
49
8
2
39
1.47
21001--21204
37
5.4
38
78
10
181
44
7
3
44
1.48
21062--21204
77
1.9
76
88
4
218
45
7
3
43
1.49
23685--23754
31
2.3
31
80
7
81
27
15
11
45
1.80
23831--23912
31
2.6
31
81
9
96
51
9
3
35
1.53
25772--25930
41
3.8
41
76
9
142
32
20
17
29
1.95
28227--28268
21
2.0
21
100
0
84
47
14
23
14
1.80
28941--29061
54
2.2
54
88
2
172
31
15
23
29
1.95
29128--29234
54
2.0
54
83
3
135
25
16
20
37
1.93
28995--29484
135
3.6
134
84
3
610
27
20
19
32
1.97
28995--29484
271
1.8
268
85
2
694
27
20
19
32
1.97
30128--30171
17
2.6
17
85
0
61
45
2
2
50
1.27
31975--32030
24
2.4
23
79
8
60
41
19
25
14
1.89
32730--32778
21
2.2
22
79
20
57
32
26
4
36
1.75
36274--36315
21
2.0
21
100
0
84
47
14
23
14
1.80
36987--37107
54
2.2
54
88
2
172
31
15
23
29
1.95
37174--37280
54
2.0
54
83
3
135
25
16
20
37
1.93
37041--37530
135
3.6
134
84
3
610
27
20
19
32
1.97
37041--37530
271
1.8
268
85
2
694
27
20
19
32
1.97
44256--44304
10
4.9
10
85
9
64
79
2
0
18
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44266--44304
15
2.6
15
84
12
53
82
0
0
17
0.68
44255--44301
14
3.1
14
82
14
51
78
2
0
19
0.85
44266--44316
20
2.5
20
87
3
66
78
0
0
21
0.75
44256--44321
20
3.4
19
79
10
62
74
3
0
22
0.96
44710--44743
14
2.5
14
90
4
52
26
2
0
70
1.01
45142--45188
23
2.1
22
84
11
60
44
0
6
48
1.28
53205--53257
23
2.3
24
90
6
83
20
20
26
32
1.98
59482--59512
16
1.9
16
93
0
53
54
0
0
45
0.99

Tables:   1

The End!