genome.fa.s5172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005172.1 Hibiscus syriacus cultivar Beakdansim tig00011670_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64218

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4065--4234	83	2.2	73	87	11	234	35	16	22	24	1.94
4095--4234	42	3.4	42	75	9	151	34	17	23	25	1.96
4088--4212	41	3.0	41	73	11	128	31	14	25	28	1.95
4095--4254	42	3.8	40	70	18	121	33	16	23	26	1.96
4088--4255	83	2.0	83	91	2	275	32	16	23	27	1.96
4202--4462	41	6.3	41	79	10	239	32	18	17	31	1.94
4272--4462	41	4.7	41	85	5	253	35	16	16	31	1.92
5712--5810	42	2.3	43	89	1	146	31	21	19	28	1.97
5828--5968	41	3.4	41	83	2	140	38	14	14	32	1.87
6561--6612	23	2.3	23	96	0	95	50	7	21	21	1.73
6552--6612	23	2.6	24	87	7	72	49	6	24	19	1.72
7976--8009	12	2.8	12	100	0	68	64	0	26	8	1.22
19195--19246	21	2.5	21	80	0	68	44	17	34	3	1.67
19241--19319	21	3.7	21	84	3	77	50	20	25	3	1.64
19250--19332	42	2.0	42	85	4	114	49	20	25	4	1.68
19262--19332	21	3.4	21	80	3	81	50	19	23	5	1.69
19655--19751	44	2.2	44	92	0	158	32	22	16	27	1.96
19865--19985	42	2.8	42	80	5	118	34	26	14	23	1.94
20256--20410	77	2.0	77	100	0	310	32	18	12	36	1.88
26601--26705	54	1.9	54	86	0	147	27	14	20	37	1.92
26463--26954	135	3.6	134	85	2	585	28	19	19	32	1.96
26733--26839	54	2.0	54	81	7	128	28	17	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32710--32766	25	2.3	24	82	11	62	68	7	7	17	1.35
39473--39513	17	2.4	18	80	8	50	65	0	12	21	1.25
40094--40143	18	2.9	17	75	18	50	70	8	14	8	1.34
42648--43240	45	13.2	45	77	4	511	42	15	16	25	1.87
42680--43239	179	3.1	178	82	4	601	41	16	16	25	1.88
49668--49712	23	2.0	23	86	0	63	24	2	8	64	1.34
63442--63610	45	3.8	46	85	4	222	33	20	6	40	1.78

Tables:   1

The End!