Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005174.1 Hibiscus syriacus cultivar Beakdansim tig00011675_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91287

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4021--4052
11
2.9
11
95
0
55
43
0
28
28
1.55
4782--4841
26
2.4
25
82
2
66
71
3
0
25
1.01
6404--6473
21
3.2
21
65
21
54
27
20
17
35
1.94
7800--7895
29
3.3
28
80
12
88
4
17
0
78
0.91
7800--7892
23
4.2
23
78
15
81
4
17
0
78
0.91
7799--7892
7
12.7
7
75
18
84
4
17
0
78
0.90
10033--10081
23
2.1
23
85
7
64
59
12
2
26
1.44
11220--11254
7
4.9
7
86
6
52
0
11
0
88
0.51
11219--11255
11
3.4
11
85
14
58
0
10
0
89
0.49
11219--11255
10
3.5
10
89
10
56
0
10
0
89
0.49
15680--15728
23
2.1
23
85
7
64
59
12
2
26
1.44
18376--18469
47
2.0
47
85
4
127
48
21
4
25
1.68
29274--29313
20
1.9
22
90
10
66
57
7
2
32
1.40
29270--29319
20
2.6
18
80
20
57
60
6
2
32
1.32
32331--32359
13
2.2
13
100
0
58
37
10
0
51
1.36
36470--36538
22
3.0
22
68
17
59
53
5
8
31
1.55
39505--39562
29
2.0
29
96
0
107
25
17
29
27
1.97
43220--43267
20
2.4
20
96
0
87
39
22
14
22
1.91
51345--51393
20
2.5
20
81
12
57
6
16
0
77
0.96
51343--51394
6
8.2
6
83
8
59
5
19
0
75
1.01
54318--54373
21
2.7
21
94
0
94
19
23
16
41
1.90
54374--54443
20
3.6
19
77
12
70
31
22
21
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55237--55286
24
2.1
24
92
0
82
26
14
18
42
1.87
55246--55299
24
2.2
24
93
0
90
20
14
20
44
1.86
55489--55526
14
2.6
14
91
4
58
50
21
18
10
1.76
57562--57596
18
1.9
18
94
0
61
54
25
2
17
1.57
57656--57925
140
1.9
140
96
0
504
29
12
15
42
1.84
57896--58218
20
17.4
20
70
16
212
35
21
18
25
1.96
57904--58214
54
5.6
54
74
14
217
35
21
18
24
1.96
57998--58024
14
1.9
14
100
0
54
48
29
14
7
1.71
57958--58154
74
2.7
73
84
4
252
35
22
18
23
1.96
57970--58186
94
2.3
94
83
6
253
35
21
18
24
1.96
57978--58154
34
4.9
34
75
15
133
35
22
18
23
1.96
58012--58218
94
2.2
94
87
0
317
33
21
20
25
1.97
58369--58430
14
4.3
14
77
6
61
46
14
0
38
1.45
59826--59925
21
4.8
20
69
11
58
24
19
34
23
1.97
60447--60492
20
2.3
20
92
0
74
17
19
23
39
1.92
62401--62439
20
2.0
20
89
0
60
56
15
12
15
1.68
63041--63154
20
5.7
20
84
0
138
26
21
24
27
2.00
63933--64032
51
2.0
50
90
2
155
23
8
25
44
1.80
64135--64178
2
22.0
2
100
0
88
50
0
0
50
1.00
64668--64798
67
2.0
66
90
1
208
48
15
9
26
1.74
65131--65158
2
14.0
2
100
0
56
50
0
0
50
1.00
76822--76879
20
3.0
20
94
2
100
22
39
10
27
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80829--80862
2
17.0
2
100
0
68
50
0
50
0
1.00

Tables:   1

The End!