genome.fa.s5175.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005175.1 Hibiscus syriacus cultivar Beakdansim tig00011676_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44344

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37--89	22	2.5	22	93	3	90	30	11	28	30	1.91
1724--1951	33	6.9	32	71	10	131	22	12	25	39	1.90
1724--1879	65	2.4	65	79	4	181	21	11	26	40	1.87
1761--1870	32	3.4	32	79	1	94	24	12	25	37	1.91
1835--1962	68	1.9	69	86	1	186	23	13	28	35	1.92
1926--1966	18	2.3	18	86	0	55	29	12	29	29	1.93
2068--2168	33	3.1	32	87	4	132	24	20	25	28	1.99
2096--2145	15	3.1	15	73	15	55	24	22	28	26	1.99
6484--6518	18	1.9	18	88	0	52	22	22	28	25	1.99
6365--6536	69	2.5	68	78	7	184	27	15	22	34	1.95
6947--7356	43	9.3	44	73	17	234	24	19	7	48	1.74
7144--7356	90	2.4	87	85	3	264	26	19	7	46	1.77
7092--7390	43	6.8	43	80	7	230	25	18	8	47	1.77
7188--7416	44	5.2	44	74	10	157	26	18	7	47	1.76
7188--7392	44	4.6	45	75	11	158	25	18	7	47	1.75
7876--7913	18	2.2	18	85	4	51	23	13	21	42	1.88
9113--9162	20	2.4	22	76	10	59	48	6	0	46	1.27
9851--9903	20	2.5	20	81	9	61	52	16	20	9	1.71
10566--10598	13	2.5	13	95	0	57	45	15	0	39	1.46
11521--11561	2	20.5	2	100	0	82	48	0	0	51	1.00
11967--12025	15	3.7	15	76	12	55	20	10	23	45	1.81
11982--12053	18	4.2	18	69	16	62	23	9	25	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11882--12110	33	6.8	33	74	4	174	24	9	24	41	1.85
13279--13321	18	2.4	18	92	0	68	20	6	0	72	1.08
15361--15525	29	5.6	29	83	6	172	35	19	6	39	1.76
15362--15524	58	2.8	59	82	8	190	34	19	6	39	1.77
22821--23007	29	6.6	29	81	7	215	35	20	6	37	1.78
23009--23048	17	2.3	18	91	4	64	17	17	50	15	1.79
24045--24070	12	2.2	12	100	0	52	38	7	38	15	1.76
27556--27591	2	18.0	2	100	0	72	50	0	0	50	1.00
28937--28989	15	3.3	15	74	23	54	24	7	22	45	1.78
28932--29076	33	4.3	32	71	15	105	24	10	24	40	1.86
28958--29090	69	1.9	69	83	6	171	24	12	25	37	1.90
29189--29330	33	4.3	33	82	7	148	30	21	22	24	1.99
36553--36633	23	3.6	22	83	6	110	23	25	24	25	2.00
39300--39448	65	2.3	64	84	3	183	29	23	18	28	1.98
41122--41253	36	3.7	36	85	0	192	42	14	15	27	1.86

Tables:   1

The End!