Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005177.1 Hibiscus syriacus cultivar Beakdansim tig00011683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67238

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2392--2539
78
1.9
79
84
4
201
37
6
16
39
1.74
3032--3090
31
1.9
31
82
6
75
62
8
1
27
1.33
9986--10040
25
2.2
25
87
3
76
60
0
0
40
0.97
31562--31622
6
10.2
6
96
0
104
31
49
16
3
1.62
31620--31673
5
10.8
5
93
0
72
16
37
40
5
1.72
37533--37629
6
16.2
6
97
0
176
31
49
16
2
1.57
37627--37680
5
10.8
5
89
0
54
20
37
37
5
1.76
38529--38588
25
2.4
25
100
0
120
21
5
16
56
1.59
40980--41038
17
3.4
17
77
13
57
33
8
11
45
1.71
44896--45849
149
6.7
147
82
8
985
21
34
20
24
1.97
45049--45243
46
4.3
45
68
16
123
21
35
21
22
1.96
45057--45880
137
5.8
137
84
6
877
20
34
20
24
1.97
44901--45880
286
3.4
282
81
8
1042
21
34
20
23
1.97
44895--45882
435
2.3
427
85
5
1282
21
34
20
24
1.97
46717--46788
31
2.2
33
80
7
85
41
6
4
47
1.50
47248--47297
22
2.4
21
86
6
66
32
32
12
24
1.91
47448--47501
22
2.5
22
90
3
83
31
9
29
29
1.88
47566--47612
22
2.2
22
85
7
62
31
4
25
38
1.75
47563--47691
20
6.4
21
73
9
99
26
10
27
36
1.88
57572--57614
18
2.4
17
85
11
59
48
6
9
34
1.62
59344--59406
5
12.6
5
75
0
63
71
3
0
25
1.01
59366--59412
15
3.1
15
93
3
76
65
2
0
31
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59344--59393
20
2.5
20
86
0
73
72
4
0
24
1.02
61434--61481
20
2.4
20
85
0
69
64
0
0
35
0.94
61433--61485
3
18.0
3
81
11
56
64
0
0
35
0.94
61630--61866
107
2.2
107
86
0
323
29
15
22
32
1.95
63104--63260
65
2.4
65
87
6
221
32
20
15
31
1.94

Tables:   1

The End!