Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005178.1 Hibiscus syriacus cultivar Beakdansim tig00011684_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97806

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2960--3003
21
2.1
21
95
0
79
29
36
11
22
1.89
3132--3209
13
6.0
13
86
0
93
28
20
16
34
1.94
3366--3399
2
17.0
2
100
0
68
50
0
0
50
1.00
14823--14872
19
2.4
21
87
9
68
30
8
30
32
1.86
14764--14971
95
2.2
96
79
0
211
33
14
23
28
1.94
14937--14992
22
2.5
22
91
0
85
33
17
21
26
1.96
16805--16895
30
3.0
30
96
0
164
36
15
7
40
1.76
17642--17681
21
1.9
21
89
0
62
55
7
7
30
1.56
21495--21575
23
3.7
22
79
8
67
22
29
20
27
1.99
21633--21693
29
2.1
29
87
0
86
6
42
8
42
1.60
23077--23134
23
2.5
23
82
0
71
29
24
22
24
1.99
23091--23140
23
2.2
23
81
0
55
26
22
28
24
1.99
23159--23376
103
2.1
103
92
0
364
36
22
13
27
1.92
28918--28984
23
2.9
23
77
4
73
29
23
22
23
1.99
29000--29217
103
2.1
103
93
0
373
36
23
13
27
1.92
33197--33577
110
3.5
110
84
3
450
30
20
18
29
1.96
33196--33519
55
5.9
55
85
2
402
31
20
18
29
1.96
36910--37049
22
6.7
22
84
6
152
30
31
21
17
1.96
36933--36984
18
2.9
18
94
0
95
34
36
17
11
1.86
36893--37005
58
1.9
58
85
0
154
31
32
17
17
1.94
43920--44039
22
5.5
22
89
0
168
30
29
22
17
1.97
43920--44040
44
2.8
44
90
0
188
31
28
22
17
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44582--44729
63
2.3
63
87
1
197
26
20
22
31
1.98
48906--48960
20
2.7
19
78
13
56
36
14
23
25
1.93
49002--49065
20
3.0
23
80
15
64
32
12
28
26
1.93
49023--49074
20
2.6
20
100
0
104
30
17
26
25
1.97
49470--49807
55
6.2
55
88
3
425
28
20
21
29
1.98
49470--49807
109
3.1
108
85
4
421
28
20
21
29
1.98
49470--49807
164
2.1
163
85
4
448
28
20
21
29
1.98
50470--50502
14
2.4
14
100
0
66
57
27
15
0
1.38
54216--54323
2
58.0
2
70
14
79
50
0
0
49
1.07
54237--54323
40
2.2
38
86
7
129
50
1
0
48
1.08
56647--56683
14
2.7
14
91
4
58
32
0
45
21
1.52
57021--57069
19
2.5
20
86
3
64
46
6
14
32
1.69
60106--60155
18
2.5
20
78
9
59
2
22
4
72
1.12
60183--60212
15
2.0
15
93
0
51
3
10
0
86
0.67
60426--60461
15
2.4
15
90
0
54
61
2
27
8
1.39
60618--60657
14
2.9
14
92
3
64
32
0
45
22
1.53
60995--61043
19
2.5
20
86
3
64
46
6
12
34
1.66
62969--63119
19
8.5
16
66
22
52
50
1
1
46
1.21
62981--63025
23
2.0
23
95
0
81
48
0
0
51
1.00
63025--63199
20
8.7
19
69
17
56
52
2
2
42
1.26
65365--65407
14
3.2
13
77
9
50
53
0
2
44
1.13
66273--66301
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71397--71487
3
30.3
3
93
0
155
36
0
0
63
0.94
72726--72786
28
2.2
28
82
8
72
27
9
4
57
1.52
77395--77442
8
6.4
8
79
20
59
85
0
14
0
0.60
77395--77442
23
2.1
22
88
11
71
85
0
14
0
0.60
77398--77450
9
5.8
9
79
18
56
81
0
18
0
0.70
77397--77447
14
3.6
14
94
2
84
82
0
17
0
0.67
78636--78781
54
2.7
54
93
0
247
34
13
23
28
1.92
79157--79217
22
2.8
22
94
0
104
36
13
14
36
1.85
80113--80512
177
2.3
176
89
1
604
31
18
21
28
1.97
80821--80893
12
6.0
12
71
9
58
47
0
0
52
1.00
82100--82167
28
2.4
27
81
13
75
27
8
4
58
1.47
91753--91800
3
15.7
3
80
20
55
66
0
2
31
1.03
92018--92062
20
2.3
20
88
3
74
68
4
6
20
1.29
96050--96146
36
2.7
36
90
3
133
30
13
37
18
1.89

Tables:   1

The End!