genome.fa.s518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000518.1 Hibiscus syriacus cultivar Beakdansim tig00000985_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57737

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761--819	29	2.0	30	96	3	111	33	0	27	38	1.57
4646--4702	21	2.7	21	88	2	87	33	17	17	31	1.93
4956--5283	41	7.9	41	83	3	354	27	22	17	32	1.96
4956--5283	83	4.0	82	82	4	365	27	22	17	32	1.96
4956--5283	124	2.6	123	86	1	424	27	22	17	32	1.96
8915--9367	43	10.6	43	78	5	418	24	22	18	34	1.96
8915--9367	85	5.3	85	79	4	446	24	22	18	34	1.96
14080--14141	3	21.7	3	78	15	69	38	0	0	61	0.96
14080--14141	18	3.8	17	78	18	78	38	0	0	61	0.96
15963--16046	30	2.9	27	72	13	69	23	9	5	60	1.50
16087--16137	19	2.7	20	81	6	52	49	1	5	43	1.38
17425--17456	16	2.0	16	100	0	64	68	6	12	12	1.37
22211--22403	92	2.1	92	92	2	325	34	18	21	25	1.96
22229--22437	92	2.3	91	88	3	294	37	17	21	23	1.94
23568--23816	76	3.3	76	76	9	235	31	15	14	38	1.88
23835--24290	40	11.4	40	91	1	743	30	15	10	43	1.80
24015--24083	23	3.3	23	64	29	62	30	14	13	42	1.84
24346--24610	43	6.2	42	85	6	291	27	11	30	31	1.91
24346--24611	86	3.1	84	83	6	329	27	11	30	31	1.92
24366--24622	129	2.0	129	86	3	365	26	11	29	31	1.92
24624--24866	89	2.7	89	88	6	366	26	19	21	32	1.97
25106--25161	12	4.7	12	78	12	62	39	0	1	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25118--25167	24	2.1	24	88	7	75	44	0	2	54	1.11
48851--48933	35	2.3	36	79	4	96	30	36	2	31	1.71
55191--55244	26	2.0	29	82	10	69	14	14	11	59	1.62

Tables:   1

The End!