genome.fa.s5180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005180.1 Hibiscus syriacus cultivar Beakdansim tig00011694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76082

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5297--5465	42	4.0	42	92	1	257	34	22	22	20	1.96
6384--6541	29	5.5	28	72	11	115	40	22	6	31	1.79
6570--6598	12	2.3	13	94	5	51	13	24	44	17	1.85
12804--12872	29	2.4	28	79	11	77	66	1	1	30	1.09
12797--12855	18	3.3	16	76	21	55	69	1	1	27	1.07
14064--14505	137	3.2	132	83	7	505	26	19	16	37	1.93
14679--14935	113	2.3	112	89	3	392	28	19	15	37	1.92
14981--15179	102	1.9	104	86	2	285	28	21	12	38	1.89
15566--15641	22	3.5	22	94	1	127	38	11	15	34	1.84
16041--16233	54	3.6	54	82	2	199	29	18	13	38	1.89
17346--17508	75	2.2	75	80	2	184	33	20	14	32	1.92
22327--22419	6	14.8	6	81	8	51	56	7	12	22	1.61
22354--22388	13	2.7	13	100	0	70	57	14	14	14	1.66
22308--22388	20	4.0	20	74	18	78	58	12	13	16	1.64
22354--22419	12	5.3	12	94	1	78	53	7	15	24	1.68
22361--22419	18	3.2	18	90	2	82	52	6	15	25	1.67
22374--22419	6	7.7	6	97	0	74	52	4	15	28	1.61
24590--24614	2	12.5	2	100	0	50	52	0	0	48	1.00
27249--27354	56	1.9	53	88	5	158	61	1	3	33	1.25
27660--27711	22	2.3	23	78	18	56	28	3	5	61	1.37
27812--27854	20	2.2	20	83	8	52	58	4	0	37	1.19
27811--27864	21	2.6	21	80	11	58	59	3	0	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28301--28393	21	4.6	20	77	4	96	39	17	23	19	1.92
28298--28393	41	2.3	41	94	0	165	40	16	22	19	1.91
28382--28476	20	4.7	20	77	2	82	35	24	16	23	1.95
28666--28707	22	1.9	22	95	0	75	21	40	16	21	1.91
28971--29008	20	1.9	20	88	0	58	13	15	21	50	1.78
30328--30372	18	2.5	18	77	0	54	28	42	13	15	1.85
30848--30893	20	2.3	20	88	0	65	36	26	21	15	1.93
30889--30977	32	2.7	32	89	3	124	47	23	20	8	1.78
30903--30960	14	3.9	14	70	16	53	46	25	20	6	1.75
30922--30982	19	3.5	19	70	22	62	44	24	21	9	1.82
31747--31938	33	5.8	33	84	5	264	42	19	22	15	1.89
31748--31945	66	3.0	66	96	0	353	41	19	22	16	1.90
31966--31999	14	2.4	14	85	0	50	8	23	20	47	1.78
32120--32154	13	2.6	14	86	9	54	42	25	0	31	1.55
33510--33576	21	3.2	21	68	4	55	19	20	35	23	1.95
33510--33632	42	2.9	41	79	7	104	23	17	36	22	1.94
35655--35753	33	3.0	33	89	1	144	39	26	23	11	1.88
35630--35814	19	10.1	19	75	14	165	44	22	21	11	1.85
35725--35814	39	2.3	38	90	1	144	47	22	18	11	1.80
35810--35890	19	4.5	19	74	16	73	11	17	24	46	1.80
36425--36502	41	1.9	41	86	0	111	21	16	21	39	1.92
36406--36499	20	4.7	20	80	2	89	23	18	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36425--36542	41	2.9	41	78	5	105	20	19	20	39	1.92
36488--36600	20	5.6	20	82	3	136	18	23	17	39	1.92
36450--36600	61	2.5	61	88	7	209	19	21	18	40	1.92
46253--46597	48	7.4	47	70	10	215	15	33	27	24	1.95
46305--46632	45	7.1	45	73	10	293	13	35	27	23	1.92
46234--46632	93	4.3	93	94	0	645	14	34	27	24	1.94
46290--46621	48	7.1	47	68	10	223	14	33	27	24	1.94
48337--48370	2	17.0	2	100	0	68	50	0	0	50	1.00
48597--48637	20	2.0	20	90	0	64	53	2	0	43	1.13
48779--48839	30	2.1	29	84	3	77	37	11	4	45	1.62
49188--49269	40	2.0	40	100	0	164	29	18	17	35	1.93
54750--54775	13	2.0	13	100	0	52	30	23	7	38	1.83
55437--55498	16	3.9	16	89	0	97	56	20	11	11	1.65
59169--59215	23	2.0	23	100	0	94	17	36	29	17	1.92
61677--61718	22	2.0	21	86	13	59	66	2	0	30	1.04
61723--61760	20	1.9	20	100	0	76	71	0	15	13	1.16
64304--64341	18	2.1	19	90	5	60	36	13	5	44	1.66
71745--71846	50	2.0	50	88	0	150	19	15	30	34	1.93
72008--72038	14	2.2	14	94	0	53	22	16	29	32	1.95
72022--72083	20	3.2	20	88	6	83	25	14	24	35	1.93
73022--73078	23	2.6	21	78	10	69	38	26	12	22	1.89
73040--73097	23	2.5	23	88	0	89	34	24	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75911--76023	21	5.5	21	82	6	108	35	24	16	23	1.95

Tables:   1

The End!