Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005181.1 Hibiscus syriacus cultivar Beakdansim tig00011695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63470

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2386--2460
38
2.0
38
91
0
123
34
6
13
45
1.70
3926--4041
60
1.9
60
89
0
178
35
11
18
34
1.87
6297--6363
31
2.2
31
94
0
116
38
19
8
32
1.83
8477--8515
20
2.1
19
90
9
62
28
30
15
25
1.96
9506--9561
27
2.1
27
100
0
112
69
17
5
7
1.31
12046--12091
20
2.3
20
100
0
92
47
0
30
21
1.51
12908--13116
103
2.0
103
94
0
364
27
13
22
35
1.92
13136--13203
23
3.0
23
88
0
91
20
26
26
26
1.99
17298--17343
20
2.3
20
92
0
74
47
2
28
21
1.62
18158--18369
103
2.1
103
96
0
388
26
14
23
35
1.93
18386--18453
23
3.0
23
91
0
100
20
27
26
25
1.99
22035--22064
2
15.0
2
100
0
60
50
0
0
50
1.00
26404--26492
19
4.7
19
88
2
126
37
21
10
31
1.87
26304--26492
38
4.8
39
73
11
145
34
22
12
29
1.91
26304--26492
19
9.6
20
75
9
122
34
22
12
29
1.91
29718--29753
18
2.0
18
94
0
63
55
25
2
16
1.55
30041--30079
20
2.0
20
100
0
78
41
23
20
15
1.90
30088--30126
20
2.0
20
94
0
69
17
20
23
38
1.93
30216--30356
61
2.2
63
82
8
162
50
16
2
31
1.57
34021--34052
13
2.5
13
94
0
55
78
12
6
3
1.06
34266--34322
22
2.6
22
88
0
87
17
14
42
26
1.87
34444--34507
20
3.2
20
95
0
110
17
17
23
42
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34500--34570
21
3.4
21
92
1
108
38
16
22
22
1.93
34574--34627
20
2.7
20
77
11
65
25
12
31
29
1.93
40022--40075
2
27.5
2
96
3
101
50
0
0
50
1.00
41868--41939
31
2.3
31
85
0
90
36
16
13
33
1.89
43600--43705
45
2.3
45
83
4
124
30
18
18
32
1.96
54288--54321
16
2.1
17
88
5
52
73
0
5
20
1.04
55631--55664
16
2.1
16
88
0
50
82
0
5
11
0.83
55661--55707
13
3.8
12
83
16
60
68
0
2
29
1.02
55661--55707
25
1.9
25
91
4
78
68
0
2
29
1.02
58372--58414
21
2.0
21
95
0
77
16
20
4
58
1.56

Tables:   1

The End!