Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005182.1 Hibiscus syriacus cultivar Beakdansim tig00011701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61071

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3039--3141
41
2.5
41
78
9
113
24
20
22
33
1.97
3546--3655
41
2.7
41
75
9
116
23
20
25
30
1.98
2917--3866
255
3.7
258
87
3
1323
32
15
17
34
1.91
2922--3851
512
1.8
509
88
3
1424
33
15
17
33
1.91
4008--4057
3
18.0
3
77
22
56
32
0
0
68
0.90
4008--4057
17
3.2
17
78
18
63
32
0
0
68
0.90
4008--4057
8
6.4
8
76
21
52
32
0
0
68
0.90
10530--10572
18
2.3
18
88
11
61
53
0
0
46
1.00
10636--10692
25
2.3
25
96
0
105
15
38
17
28
1.91
11283--11344
26
2.4
26
94
0
106
38
29
20
11
1.88
12621--12662
22
2.0
21
86
9
59
33
7
0
59
1.25
12854--12910
22
2.6
22
97
0
105
54
14
3
28
1.56
13936--13968
13
2.5
13
90
9
50
51
0
6
42
1.26
13914--14153
72
3.4
67
75
16
195
48
2
5
44
1.36
13915--14249
38
8.8
37
79
14
321
48
2
4
44
1.38
14143--14179
2
18.5
2
100
0
74
51
0
0
48
1.00
14179--14248
36
2.0
36
85
2
97
47
5
5
41
1.51
14328--14390
13
5.2
12
74
24
60
25
3
0
71
1.01
14330--14390
19
3.3
18
80
15
63
26
3
0
70
1.02
15463--15569
52
2.1
51
89
3
160
18
12
3
65
1.40
15462--15543
25
3.2
24
65
20
58
18
13
2
65
1.36
15562--15637
14
5.4
14
72
16
50
19
5
1
73
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22205--22578
38
9.9
38
86
8
498
47
3
5
43
1.42
22433--22485
27
2.0
27
81
7
63
45
1
5
47
1.37
22655--22717
13
4.9
13
73
22
53
22
3
0
74
0.96
22655--22717
17
3.7
18
82
14
73
22
3
0
74
0.96
22654--22718
21
3.2
19
81
18
69
21
3
0
75
0.94
22665--22729
7
9.4
7
72
9
53
18
4
1
75
1.05
22658--22727
33
2.1
34
86
7
99
18
4
1
75
1.04
23070--23130
29
2.1
30
90
3
97
54
34
6
4
1.48
23694--23794
52
1.9
52
90
4
159
18
11
1
67
1.31
23777--23847
25
2.8
25
72
16
74
21
4
1
73
1.08
23891--23916
11
2.4
11
100
0
52
26
0
0
73
0.84
24595--24657
33
1.9
32
81
12
74
52
0
1
46
1.10
26944--26983
21
1.9
21
89
0
62
22
2
30
45
1.66
43503--43541
5
7.8
5
91
0
51
2
41
33
23
1.68
43818--43872
22
2.5
22
77
11
67
30
7
20
41
1.79
55883--55909
3
9.0
3
100
0
54
66
0
0
33
0.92
60574--60619
22
2.1
22
91
0
74
32
17
26
23
1.97

Tables:   1

The End!