genome.fa.s5183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005183.1 Hibiscus syriacus cultivar Beakdansim tig00011705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70088

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15274--15317	14	3.0	14	80	6	52	52	11	18	18	1.74
17540--17640	51	2.0	51	94	0	175	36	12	19	30	1.90
19694--19724	13	2.4	13	94	0	53	16	48	19	16	1.81
19743--19818	29	2.6	29	81	4	82	23	9	25	42	1.83
21471--21546	29	2.6	29	83	4	82	22	9	25	43	1.82
27880--27935	3	18.7	3	92	0	94	1	32	1	64	1.14
28489--28523	2	17.5	2	93	0	61	51	2	0	45	1.16
29536--29593	19	3.1	18	77	5	62	10	18	29	41	1.84
29749--29777	14	2.1	14	100	0	58	79	0	6	13	0.93
29817--29987	31	5.2	32	69	22	111	45	5	3	46	1.43
29816--30072	38	7.4	33	77	15	165	44	5	4	45	1.46
29825--30073	37	7.1	37	78	13	219	44	4	4	45	1.46
30701--31379	163	4.1	163	95	0	1135	22	21	26	29	1.99
37584--37641	19	3.1	18	77	5	62	10	18	29	41	1.84
37797--37825	14	2.1	14	100	0	58	79	0	6	13	0.93
37865--38035	32	5.2	32	74	16	143	45	4	3	46	1.41
37881--38120	38	7.0	33	77	17	158	43	5	5	46	1.47
37869--38058	96	1.9	106	82	11	256	45	4	4	46	1.42
37873--38120	37	7.1	36	80	12	229	44	4	4	45	1.46
39296--39371	39	1.9	39	86	5	109	14	15	23	46	1.83
40536--40565	12	2.6	12	94	5	53	20	0	10	70	1.16
44625--44704	26	3.0	25	73	14	63	56	1	2	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44853--44891	20	2.0	20	89	0	60	53	2	0	43	1.14
45478--45581	51	2.0	51	96	0	190	41	4	22	31	1.74
55012--55045	17	2.0	17	100	0	68	5	23	23	47	1.73
55787--55832	20	2.3	20	92	7	76	52	13	8	26	1.69
57162--57204	22	2.0	22	95	0	77	23	20	18	37	1.94

Tables:   1

The End!