genome.fa.s5184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005184.1 Hibiscus syriacus cultivar Beakdansim tig00011706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75271

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7183--7220	20	1.9	20	88	0	58	23	13	36	26	1.91
8433--8824	35	10.8	36	81	8	343	43	3	9	43	1.55
8433--8756	104	3.0	106	84	6	382	43	3	9	43	1.54
11019--11117	34	2.9	34	93	3	162	37	0	0	62	0.95
11037--11127	25	3.6	25	74	15	80	36	0	0	63	0.94
11018--11127	16	6.7	16	75	9	96	35	0	0	64	0.94
19100--19132	3	11.0	3	93	0	57	0	30	0	69	0.88
20714--20806	32	3.0	32	79	9	120	26	18	21	33	1.96
22646--22692	22	2.1	22	96	0	85	36	8	38	17	1.80
23713--24177	59	7.9	58	75	6	294	30	20	10	38	1.86
26867--27068	35	5.8	35	81	4	237	44	3	9	42	1.54
26867--27068	71	2.9	69	82	3	253	44	3	9	42	1.54
30468--30646	94	1.9	96	87	4	265	25	25	11	36	1.90
35228--35277	13	3.9	13	82	12	68	74	2	2	22	1.03
35307--35350	22	2.0	22	90	0	70	34	6	6	52	1.55
35279--35775	36	13.8	36	74	9	313	42	8	3	44	1.53
35348--35761	35	11.6	35	77	8	354	42	8	3	44	1.52
35362--35793	104	4.1	103	82	6	445	42	8	3	45	1.53
35360--35716	69	5.1	68	76	9	204	42	9	3	45	1.54
43651--43692	21	2.0	21	100	0	84	52	9	14	23	1.71
49027--49102	36	2.1	36	85	7	100	47	1	3	47	1.29
51388--51462	35	2.2	35	88	4	109	32	0	22	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53116--53237	64	1.9	64	86	3	174	24	17	21	36	1.94
55019--55043	12	2.1	12	100	0	50	8	44	0	48	1.32
57416--57465	21	2.4	21	96	3	93	44	12	10	34	1.75
57621--57741	64	1.9	64	82	3	154	26	14	20	38	1.92
61871--61992	64	1.9	64	86	3	174	26	18	19	35	1.95
70236--70271	18	2.0	18	100	0	72	44	16	33	5	1.71
74547--74594	22	2.1	23	84	3	62	29	2	0	68	1.01
74681--74735	24	2.2	25	81	18	71	41	5	0	52	1.24
74964--75027	28	2.3	28	86	5	85	68	3	1	26	1.13

Tables:   1

The End!