Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005185.1 Hibiscus syriacus cultivar Beakdansim tig00011710_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88700

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4983--5067
25
3.4
26
72
19
74
54
0
3
42
1.17
5006--5059
21
2.3
23
84
12
67
53
0
3
42
1.18
5034--5082
25
1.9
26
87
4
73
57
0
0
42
0.99
17458--17506
17
2.7
17
84
9
62
36
18
24
20
1.94
19591--19632
11
3.7
11
79
17
50
71
9
0
19
1.13
23097--23149
18
2.9
18
91
0
88
28
33
22
15
1.94
31081--31110
15
2.0
15
93
0
51
70
10
6
13
1.34
31635--31676
19
2.2
19
100
0
84
16
23
23
35
1.95
39813--39865
21
2.5
21
100
0
106
28
9
22
39
1.85
51050--51074
2
12.5
2
100
0
50
48
0
0
52
1.00
56713--56762
16
3.1
16
97
0
91
30
16
16
38
1.90
56713--56782
32
2.2
32
84
0
86
30
17
14
38
1.89
57437--57581
2
74.0
2
71
16
90
41
6
2
49
1.42
57770--57840
2
36.5
2
74
5
65
43
4
2
49
1.36
57770--57844
27
2.7
27
93
4
123
44
5
2
48
1.39
59700--59974
116
2.4
117
86
1
372
36
10
21
32
1.87
59691--60047
59
6.1
60
71
13
219
35
11
22
31
1.89
61427--61476
23
2.2
23
88
0
73
40
6
22
32
1.78
61505--62182
198
3.4
201
80
8
647
31
14
13
40
1.85
64585--65342
199
3.8
197
88
4
1083
27
14
15
42
1.86
65187--65502
160
2.0
160
95
1
571
26
15
16
41
1.88
65950--65994
19
2.4
19
88
3
65
57
8
2
31
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67461--67499
18
2.2
18
95
0
69
5
41
0
53
1.23
69185--69223
18
2.2
18
86
9
53
43
7
2
46
1.46
69471--69519
19
2.6
20
87
12
77
38
18
0
42
1.50
70236--70560
165
2.0
164
85
3
447
28
12
12
46
1.78
70401--71265
183
4.8
183
84
2
1016
27
14
13
45
1.82
72108--72151
22
2.0
22
95
0
79
18
34
13
34
1.90
75964--76123
84
1.9
87
87
8
240
28
17
23
30
1.97
77037--77077
22
1.9
21
90
5
64
70
4
0
24
1.06
77812--77870
30
1.9
30
86
6
82
32
1
3
62
1.21
77810--77915
30
3.6
28
74
12
77
36
5
2
54
1.39
77973--78076
29
3.5
28
87
7
136
53
0
4
41
1.22
78124--78209
30
2.9
29
78
13
93
60
2
1
36
1.17
82019--82162
73
2.0
73
91
0
234
18
28
28
24
1.98
83559--83628
33
2.0
35
84
13
92
48
4
35
11
1.59

Tables:   1

The End!