Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005187.1 Hibiscus syriacus cultivar Beakdansim tig00011712_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78146
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:9120 original size:16 final size:16
Alignment explanation
Indices: 9099--9138 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
9089 TTAAGAAAAA
*
9099 ATATAAAAATTAATTT
1 ATATAAAAATTAAATT
9115 ATAT-AAAATTAAATT
1 ATATAAAAATTAAATT
9130 ATATAAAAA
1 ATATAAAAA
9139 ATATAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTAAATT
Found at i:12732 original size:43 final size:43
Alignment explanation
Indices: 12685--12826 Score: 123
Period size: 43 Copynumber: 3.4 Consensus size: 43
12675 TATGGGCATG
*
12685 ATTATAAA-GTAAAAAAGTGGGATTGAAAATTTTTGATGCCTCA
1 ATTATAAATGTAAAAAAGTGGGATTGAAAATTTTAGAT-CCTCA
* * * * *** *
12728 ATTATAAATGT-ACAACGTGAGATTAAAAATTAGGGA-CATCA
1 ATTATAAATGTAAAAAAGTGGGATTGAAAATTTTAGATCCTCA
* **
12769 ATTATAAATGTAAAAAA-TTGGATTGAAAAAATTAGATACCTCA
1 ATTATAAATGTAAAAAAGTGGGATTGAAAATTTTAGAT-CCTCA
12812 ATTATAAA-GTAAAAA
1 ATTATAAATGTAAAAA
12827 GTGAACTTTT
Statistics
Matches: 76, Mismatches: 19, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
41 26 0.34
42 10 0.13
43 38 0.50
44 2 0.03
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.30
Consensus pattern (43 bp):
ATTATAAATGTAAAAAAGTGGGATTGAAAATTTTAGATCCTCA
Found at i:19499 original size:30 final size:30
Alignment explanation
Indices: 19464--19535 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
19454 AAATATATCT
*
19464 CTAATAACAAATATTGAAAAAATT-GGACCC
1 CTAATAACAAATATTAAAAAAATTAGG-CCC
* *
19494 CTAATAATAAATATTAAAAAAATTAGGTCC
1 CTAATAACAAATATTAAAAAAATTAGGCCC
*
19524 TTAATAACAAAT
1 CTAATAACAAAT
19536 GTCAAAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 34 0.94
31 2 0.06
ACGTcount: A:0.53, C:0.12, G:0.07, T:0.28
Consensus pattern (30 bp):
CTAATAACAAATATTAAAAAAATTAGGCCC
Found at i:19680 original size:33 final size:34
Alignment explanation
Indices: 19608--19693 Score: 90
Period size: 33 Copynumber: 2.6 Consensus size: 34
19598 AGTAGACATC
* *
19608 TAATAATAAATATT-AG-GAAAAATTGAACCCCA
1 TAATAATAAATATTAAGAAAAAAATTGAAACCCA
** *
19640 TGGTAATAAATATTAAGAAAAAAATT-AAACCCT
1 TAATAATAAATATTAAGAAAAAAATTGAAACCCA
*
19673 TAATAATAAGTATTAA-AAAAA
1 TAATAATAAATATTAAGAAAAA
19694 TTAGGTTCCA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
32 17 0.39
33 20 0.45
34 7 0.16
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (34 bp):
TAATAATAAATATTAAGAAAAAAATTGAAACCCA
Found at i:20060 original size:19 final size:19
Alignment explanation
Indices: 20036--20072 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
20026 GTGACATATT
*
20036 TTTTTAATAATATTTTTAG
1 TTTTTAAGAATATTTTTAG
*
20055 TTTTTAAGAATTTTTTTA
1 TTTTTAAGAATATTTTTA
20073 AATTTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTTTAAGAATATTTTTAG
Found at i:20084 original size:18 final size:19
Alignment explanation
Indices: 20037--20084 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
20027 TGACATATTT
* * **
20037 TTTTAATAATATTTTTAGT
1 TTTTAAGAATTTTTTTAAA
20056 TTTTAAGAATTTTTTTAAA
1 TTTTAAGAATTTTTTTAAA
20075 TTTTAA-AATT
1 TTTTAAGAATT
20085 ATAACACGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTAAGAATTTTTTTAAA
Found at i:23239 original size:106 final size:106
Alignment explanation
Indices: 23054--24388 Score: 2074
Period size: 106 Copynumber: 12.8 Consensus size: 106
23044 AATGAAATTG
* * * * * *
23054 TTGACAATCAGCTG-CCCTTTCGTCGTGAAATTGAGCTTGTGTTGTCTTGG-GTCCAAGATCCTT
1 TTGACAACCAGCGGTCCC-TTCGTCGTGAAGTTGAACTTGCGTTGTC-TGGAGTCCAATATCCTT
* * * *
23117 CGCTGAGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTA
64 CGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
23160 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* *
23225 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTA
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
*
23266 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTACAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
*
23331 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTA
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
* *
23372 TCGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* *
23437 CTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTG
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
23478 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* * *
23543 TTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTG
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
*
23584 TTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* *
23649 CTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTG
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
23690 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* * *
23755 -T-T---G-CG-AA---G-T-TGAAATTGGGAAGTTGTTTA
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
23784 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* *
23849 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTA
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
23890 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* * * *
23955 TTGTGAAGTTGAAATTGGCTATGAAATTAGGAAATTATTTG
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
*
23996 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCTAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* *
24061 CTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTG
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
* *
24102 TTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* * *
24167 -T-T---G-CG-AA---G-T-TGAAATTGGGAAGTTGTTTA
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
24196 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* *
24261 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTA
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
24302 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
*
24367 TTGTGAAGTTGAAATTGGCTCT
66 CTGTGAAGTTGAAATTGGCTCT
24389 CGAGCAATAT
Statistics
Matches: 1150, Mismatches: 53, Indels: 52
0.92 0.04 0.04
Matches are distributed among these distances:
94 160 0.14
95 4 0.00
96 4 0.00
99 6 0.01
100 4 0.00
101 6 0.01
104 4 0.00
105 7 0.01
106 952 0.83
107 3 0.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (106 bp):
TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTA
Found at i:23821 original size:200 final size:200
Alignment explanation
Indices: 23564--24384 Score: 1354
Period size: 200 Copynumber: 4.0 Consensus size: 200
23554 AAATTGGCTC
* * * *
23564 TGAAATTAGGAAATTATTTGTTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
23629 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTGTTGA
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTATTGA
23694 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGC
131 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGC
23759 GAAGT
196 GAAGT
*
23764 TGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * *
23829 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGA
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTATTGA
*
23894 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGT
131 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGC
23959 GAAGT
196 GAAGT
*
23964 TGAAATTGGCTATGAAATTAGGAAATTATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
1 TGAAATTGG----G--A--A-G---TTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
*
24029 AACTTGCGTTGTCTGGAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAA
54 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAA
* *
24094 ATTATTTGTTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
119 ATTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
*
24159 ATCATTCGTTGCGAAGT
184 ATCCTTCGTTGCGAAGT
*
24176 TGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * *
24241 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGA
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTATTGA
*
24306 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGT
131 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGC
24371 GAAGT
196 GAAGT
24376 TGAAATTGG
1 TGAAATTGG
24385 CTCTCGAGCA
Statistics
Matches: 579, Mismatches: 30, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
200 385 0.66
203 1 0.00
204 2 0.00
206 2 0.00
208 2 0.00
209 1 0.00
212 186 0.32
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (200 bp):
TGAAATTGGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTATTGA
CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGC
GAAGT
Found at i:23904 original size:412 final size:412
Alignment explanation
Indices: 23009--24388 Score: 2258
Period size: 412 Copynumber: 3.3 Consensus size: 412
22999 GTTTCGATGT
* * * *
23009 CAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T--GAA----ATTGTTGACAATCAGC
1 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGACAACCAGC
* * * * * * * *
23066 TG-CCCTTTCGTCGTGAAATTGAGCTTGTGTTGTCTTGG-GTCCAAGATCCTTCGCTGAGAAGTC
66 GGTCCC-TTCGTCGTGAAGTTGAACTTGCGTTGTC-TGGAGTCCAATATCCTTCGTTGTGAAGTT
* * * *
23129 GAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
129 GAAATTGGCTCTGAAATTAGGAAATTATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
* *
23194 ACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG
194 ACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAA
* * *
23259 TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTACAATA
259 TTATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
* * *
23324 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATCGACAACCAGCGGTCC
324 TCCTTCG-T-T---G-CG-AA---G-T-TGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCC
*
23389 CTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTC
377 CTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* * * *
23425 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATTATTTGTTGACAACCAGC
1 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGACAACCAGC
23490 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
*
23555 AATTGGCTCTGAAATTAGGAAATTATTTGTTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAAC
131 AATTGGCTCTGAAATTAGGAAATTATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
23620 TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATT
196 TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATT
23685 ATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
261 ATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
23750 CTTCGTTGCGAAGTTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
326 CTTCGTTGCGAAGTTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
23815 TGAACTTGCGTTGTCTGGAGTC
391 TGAACTTGCGTTGTCTGGAGTC
23837 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGACAACCAGC
1 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGACAACCAGC
23902 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
*
23967 AATTGGCTATGAAATTAGGAAATTATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
131 AATTGGCTCTGAAATTAGGAAATTATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
*
24032 TTGCGTTGTCTGGAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATT
196 TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATT
*
24097 ATTTGTTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
261 ATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
*
24162 ATTCGTTGCGAAGTTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
326 CTTCGTTGCGAAGTTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
24227 TGAACTTGCGTTGTCTGGAGTC
391 TGAACTTGCGTTGTCTGGAGTC
24249 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGACAACCAGC
1 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGACAACCAGC
24314 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
24379 AATTGGCTCT
131 AATTGGCTCT
24389 CGAGCAATAT
Statistics
Matches: 919, Mismatches: 35, Indels: 24
0.94 0.04 0.02
Matches are distributed among these distances:
412 612 0.67
413 1 0.00
414 1 0.00
416 34 0.04
417 4 0.00
418 2 0.00
419 1 0.00
420 3 0.00
422 1 0.00
423 4 0.00
424 253 0.28
425 3 0.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (412 bp):
CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTTTATTGACAACCAGC
GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGA
AATTGGCTCTGAAATTAGGAAATTATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTAGGAAATT
ATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
CTTCGTTGCGAAGTTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
TGAACTTGCGTTGTCTGGAGTC
Found at i:52009 original size:23 final size:23
Alignment explanation
Indices: 51983--52060 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
51973 CACCACAGCT
*
51983 CATATAATTGCACTGAAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
* *
52006 CATATAATTGCACCGGAGTGCCG
1 CATATAATTGCACCGAAGTGCCA
* * * *
52029 CGTAGAATTGCATCGTAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
*
52052 TATAATAAT
1 CAT-ATAAT
52061 GTCCATAAGG
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 39 0.91
24 4 0.09
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (23 bp):
CATATAATTGCACCGAAGTGCCA
Found at i:52230 original size:103 final size:103
Alignment explanation
Indices: 52067--52284 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
52057 TAATGTCCAT
* *
52067 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
52132 GACTTCACACATGTTCCAAAGAATATATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
52170 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
52235 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
52273 AAGGACCACATA
1 AAGGACCACATA
52285 GACCCTCGAC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:55214 original size:247 final size:249
Alignment explanation
Indices: 54761--55768 Score: 1098
Period size: 246 Copynumber: 4.1 Consensus size: 249
54751 TTTGTTGATT
* * * * *
54761 GTGCTCAATAACTTAGATCAAACATTCCTTTCACTAGGGTTTGGGAATTAAGAGGAAGAGGGGGA
1 GTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTTTGAGAATGAAGAGGAAGA-GGGGA
* ** * * * *
54826 AGGGACACTTGTTTTCCCTA-CGAGGTGCTTTTTTGAATTTTGAGGGACATTGAGAGCTATTTGA
65 GGGGACACTTGCCTTCCCTATCGAGGTGCTTTGTTAAATTTTAAGGGATATTGAGAGCTATTTGA
* * * * * * *
54890 AC-TTTCATTTGTTGGTTACACCCAATACCTTATATCGCAATGTG-TTTCAGGAATGATTGGGTG
130 ACTTTTCATTTATTGGTTACACCCAATACCTTAGATCACACTCTGCTTTCAGAAAAGATTGGGTG
* ** * *
54953 TGACTACTAAAAGAAAGTCCAAATAGTAACACAATTTGCTTTCAGGAAGGATTGA
195 TGACTACCAAAAGAAAGTCCAAATAACATCACAATTTGCTTTCAGAAAGGATTGA
* *
55008 GTGCTCAATAACTTAGATCAAACTTTTCTTTCGTTAGGGTTTGAGAATGAAGAGGAAGAGGGGAG
1 GTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTTTGAGAATGAAGAGGAAGAGGGGAG
* * *
55073 GGGACACTTGCCTTTCCTATAG-GGTGCTTTGTTAAATTTTAAGGGATACTGAGAGCTATTTGAA
66 GGGACACTTGCCTTCCCTATCGAGGTGCTTTGTTAAATTTTAAGGGATATTGAGAGCTATTTGAA
* * * * * *
55137 CTTTTC-TTTACTGGTTACACCTAATATCTTAGATCATACTCTGCTTTCAGAAAAGATTGAGTGA
131 CTTTTCATTTATTGGTTACACCCAATACCTTAGATCACACTCTGCTTTCAGAAAAGATTGGGTGT
** ** * * *
55201 GACTACCAAAAGAAAGTTAAAATAGGATCACACTTTGCTTTCAGGAAA-AATTGG
196 GACTACCAAAAGAAAGTCCAAATAACATCACAATTTGCTTTCA-GAAAGGATTGA
* * **
55255 GTGCTCAATAACTTAGATTAAACTTTGCTTTCGTTAGGGTTTG-GAATGAAGAGGAAGAAAGG-G
1 GTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTTTGAGAATGAAGAGGAAGAGGGGAG
* * * * * *
55318 GGAATACCTGCCATTCCCTATTG-GGTGCATTATTAAATTTTAAGGGATATTGAGAGCTATTTGA
66 GGGACACTTGCC-TTCCCTATCGAGGTGCTTTGTTAAATTTTAAGGGATATTGAGAGCTATTTGA
* * * * * *
55382 AC-TTTCCTTTGTTGGTTACACTCAATACCTTAGATCATACTCTGCTTTCAGGAAGGATTGGGTG
130 ACTTTTCATTTATTGGTTACACCCAATACCTTAGATCACACTCTGCTTTCAGAAAAGATTGGGTG
* * * *** * * *
55446 TGACTA-CTAAAGAAAAGTTCAAATAACATCACACTCAACTTTTAAAAAGGATTGG
195 TGACTACCAAAAG-AAAGTCCAAATAACATCACAATTTGCTTTCAGAAAGGATTGA
* * *
55501 GTGCTCAATAACATAGATCAAACTTTGCTTTTGCTAGGGTTTGAGAATGAAGAGGAAGAGGGGAT
1 GTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTTTGAGAATGAAGAGGAAGAGGGGAG
* * * *
55566 GTGACACTT-CTCTTCCCT-TCGTGGTGCTTTGTTAAATTTTAA-GGAGCATTGAGAGTTATTTG
66 GGGACACTTGC-CTTCCCTATCGAGGTGCTTTGTTAAATTTTAAGGGA-TATTGAGAGCTATTTG
* *
55628 AACTTTTCTTTTGA-TGGTTACACCCAATACCTTAGATCACACTCTCCTTTCA-AGAAAGATTGG
129 AACTTTTCATTT-ATTGGTTACACCCAATACCTTAGATCACACTCTGCTTTCAGA-AAAGATTGG
* *
55691 GTGTGACTACCAAAGGAAAGTTCC-AATAACATCAC-ATTATGCTTTTAGAAAGGATTGA
192 GTGTGACTACCAAAAGAAAG-TCCAAATAACATCACAATT-TGCTTTCAGAAAGGATTGA
55749 GTGCTCAATAACTTAGATCA
1 GTGCTCAATAACTTAGATCA
55769 CACTATCCTT
Statistics
Matches: 640, Mismatches: 102, Indels: 37
0.82 0.13 0.05
Matches are distributed among these distances:
245 22 0.03
246 279 0.44
247 216 0.34
248 117 0.18
249 6 0.01
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.32
Consensus pattern (249 bp):
GTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTTTGAGAATGAAGAGGAAGAGGGGAG
GGGACACTTGCCTTCCCTATCGAGGTGCTTTGTTAAATTTTAAGGGATATTGAGAGCTATTTGAA
CTTTTCATTTATTGGTTACACCCAATACCTTAGATCACACTCTGCTTTCAGAAAAGATTGGGTGT
GACTACCAAAAGAAAGTCCAAATAACATCACAATTTGCTTTCAGAAAGGATTGA
Found at i:55847 original size:102 final size:101
Alignment explanation
Indices: 55652--55840 Score: 218
Period size: 102 Copynumber: 1.9 Consensus size: 101
55642 TGGTTACACC
* * * *
55652 CAATACCTTAGATCACACTCTCCTTTCAAGAAAGATTGGGTGTGACTACCAAAGGAAAGTTCCAA
1 CAATAACTTAGATCACACTATCCTTTCAAGAAAGATCGGGTGTGACTACAAAAGGAAAG-TCCAA
* * * *
55717 TAACATCACATTATGCTTTTAGAAAGGATTGAGTGCT
65 AAACATCACACTATACTTTCAGAAAGGATTGAGTGCT
* * * *
55754 CAATAACTTAGATCACACTATCCTTTCAGGAATGATCGGGTGTGACTATAAAAGGAAAG-CTAAA
1 CAATAACTTAGATCACACTATCCTTTCAAGAAAGATCGGGTGTGACTACAAAAGGAAAGTCCAAA
* *
55818 AATGGATCACACTCTACTTTCAG
66 AA--CATCACACTATACTTTCAG
55841 GGAGGATGGG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
100 5 0.07
102 66 0.93
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (101 bp):
CAATAACTTAGATCACACTATCCTTTCAAGAAAGATCGGGTGTGACTACAAAAGGAAAGTCCAAA
AACATCACACTATACTTTCAGAAAGGATTGAGTGCT
Found at i:56724 original size:244 final size:243
Alignment explanation
Indices: 56278--58276 Score: 1490
Period size: 244 Copynumber: 8.3 Consensus size: 243
56268 CTTTAAAGAA
** * * * * * *
56278 AGATCACACTCTACTTTCAGGGAGGCTTGGATGTGACTACCAAAGGAAAGTTTAAATTGCATCAC
1 AGATCACACTCTGTTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCAC
* * * * * *
56343 ACTTTGCTTT-TAGAAGGATTGGGTGCTCAATAAATTAGATCAAACTTTGCTTTTGCCAAGGTTT
66 ACTCTGCTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTTT
* ** *
56407 GGGAATGAAGA-GAAAGAGGGGGCGGGGACATGTGCCTTCCCTAC-AGGGTGCTTTATTGAATTT
131 GGGAATGAAGAGGAAA-AGGGGGAGGGGACACATGCC-T---TACGA-GGTGCTTTGTTGAATTT
* *
56470 TAAGGGACATTGAGAGATATTTGAATTTTCCTTTGCTGGTTACATCCAATAACTT
190 TAAGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACA-CCAATACCTT
* * * * * * *
56525 AGACCACACTCTGTTTTCAAGAAGGATTTGATGTGATTACCAAAGGAAACTACAAATAGCATCAT
1 AGATCACACTCTGTTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCAC
* * * ** * * *
56590 GCTCTACTTTCAAGAAGGATTGGGTGATTTATAACTTAGATCAAGCTATTGCTTTTGTTAGGGTT
66 ACTCTGCTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACT-TTGCTTTCGCTAGGGTT
* * * *
56655 TGGGAATCAAGAGGAAAAGGGAGAGGGGACACATG-CTTACGAAGTGCTTTATTGAATTTTAAGG
130 TGGGAATGAAGAGGAAAAGGGGGAGGGGACACATGCCTTACGAGGTGCTTTGTTGAATTTTAAGG
** * * * *
56719 GACATTGAGAGCA-ATTCAAACTTTCTTTTGCTGGCTACACCCAGTACTTT
195 GACATTGAGAG-ATATTTGAACTTTCCTTTGCTGGTTACA-CCAATACCTT
* * ** * * *
56769 AGATCACAGTTTACTTTCA-GATAGGATTGGGTATGACTACCAAAGGAAAGTTCAAATAACATCA
1 AGATCACACTCTGTTTTCAGGA-AGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCA
* * * * * *
56833 CACTTTGATTTCATA-AAGGATTGGGTGCTCAATAACTTAGAACAAACCTTACTTTCACTAGGGT
65 CACTCTGCTTTCA-AGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGT
* * *
56897 TTGGGAATAAAGA-GAAAGAGGGGGTA-GGGACACTTGACTTCCCTAC-AGGTTGCTTTGTTGAA
129 TTGGGAATGAAGAGGAAA-AGGGGG-AGGGGACAC---A-TGCCTTACGAGG-TGCTTTGTTGAA
* * * * **
56959 -TTTAAGGGACATTAAAAGCTATTTGAACTTTCTTTTGCTGGTTACACCTAATATTTT
187 TTTTAAGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACACC-AATACCTT
* * *
57016 AGTTCACATTCTGCTTTT-AGGAAGGAATGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCA
1 AGATCACACTCTG-TTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCA
* * * * * *
57080 CACTCTGCTTTC-AGAAAAGATTGGGTGCTC---AACTTAGATCGAACTTTACTTTCACTACGAT
65 CACTCTGCTTTCAAG-AAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGT
** * * * * * *
57141 TTATGAATGAAGAAGAAAAGGGGTAGGGGACAATTACCTTCCTTACGGGGTGCTTTGTTGAATAT
129 TTGGGAATGAAGAGGAAAAGGGGGAGGGGAC----ACATGCCTTACGAGGTGCTTTGTTGAATTT
* * * * * * *
57206 TAAGAGACATTGAGAGTTGTTTGAACTTTCCTTTACTTGTTATATCGAATACCTT
190 TAAGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACA-CCAATACCTT
* * ** * * * **
57261 AAATCACACTTTACTTTCACGAATGATTGAGTGTGGCTACCAAAGGAAAGTTCAAAT---A--AC
1 AGATCACACTCTGTTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCAC
* * ** * * *
57321 ACTCTGCTTTCAGGAAGGATTGGGTGCTCAATAACTTAGATCAAAATTTTATTTTGCTA-GATAT
66 ACTCTGCTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTTT
* *
57385 GAGAATGAAGAGGAAAAGGTGGGAAGGGG---CA-G-C--A-G-GGTGCTTTGTTGAATTTTATG
131 GGGAATGAAGAGGAAAAGG-GGG-AGGGGACACATGCCTTACGAGGTGCTTTGTTGAATTTTAAG
* * * * * *
57441 AGACA-CGAGAGTTATTTGAATTTTCCTTTACTAGTTACACCCAATACCTT
194 GGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACA-CCAATACCTT
* * *
57491 AGATCACACTCT-ATTTCTAGGAAGGATTTGGTGTGAATACCAAAGGAAAGTTCAAATAGCATCA
1 AGATCACACTCTGTTTTC-AGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCA
* * * * *
57555 CACACTACTTTCATGAAGGATTGGGTGCTCAATAACTTAGATCATATTTTGCTTTCGCTAGGGTT
65 CACTCTGCTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTT
* * * * * *
57620 T-AGAATGAAGAGGAAAA-GGGGAAGGGACACCTGCCTTTCCTACGGCTGTTTTGTTGAA---T-
130 TGGGAATGAAGAGGAAAAGGGGGAGGGGACACATGCC-TTACGA-GG-TGCTTTGTTGAATTTTA
* * *
57679 ------ATTGAGAGCTATTTGAACTTTTCTTGGCTGGTTACACCTAATACCTT
192 AGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACACC-AATACCTT
* * * * *
57726 AGATCACACTTTGCTTTT-AGGAAAGATTGGGCGTGATTA-CAAAGGAAAGTTTAAATAACAT--
1 AGATCACACTCTG-TTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCA
* * * * * **
57787 CACTCTGTTTTTAAGGAGGACTGGGTG----ATAACTTAGATTAAAC-TT--TTTCTTTAGGGTT
65 CACTCTGCTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTT
* * * *
57845 TGGGAATGAAGAGGAAAAGGGGGTGGGGA-AAACTGCCTTCCCTACGAGGTGTTTTGTTGACTTT
130 TGGGAATGAAGAGGAAAAGGGGGAGGGGACACA-TGCC-T---TACGAGGTGCTTTGTTGAATTT
* * * * *
57909 TAAGGGACAATGAGAGCTATTTAAACTTTCTTTTGCTGGTTACACCAAACACCTT
190 TAAGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACACC-AATACCTT
* ** *
57964 AGATCACACTCTATTTTCAGGAAGGATTGGGTGTGACTT-CCAAATAAAAGTTCAAAATAGCATT
1 AGATCACACTCTGTTTTCAGGAAGGATTGGGTGTGA-TTACCAAAGGAAAGTTC-AAATAGCATC
* * * * *
58028 ACACTATGCTTTCATGAAAGATTAGGTGCTCAATAACTT-GATCAAACTTTGCTTTCGCTATGGT
64 ACACTCTGCTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGT
* * * * * * * *
58092 TTGGAAATGAAGAGGAAGAGAGGAGAGGGGATACCTGCCTTCCCTACGGGGAGCTTTATTGAATT
129 TTGGGAATGAAGAGGAAAAG-GGGGAGGGGACACATGCC-T---TACGAGGTGCTTTGTTGAATT
* * * ** * *
58157 ATAAGGAACACTGAGA-ACTATTTGAACTTTTTTTTTCTGGTTACACCCACTACCTT
189 TTAAGGGACATTGAGAGA-TATTTGAACTTTCCTTTGCTGGTTACA-CCAATACCTT
* * * *
58213 AGATCACACTATGCTTTCAGGAAGGATTGGGTGTGACTACTAAAGGAAAGTTCAAATAGCATCA
1 AGATCACACTCTGTTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCA
58277 GGAAGGATTG
Statistics
Matches: 1390, Mismatches: 268, Indels: 187
0.75 0.15 0.10
Matches are distributed among these distances:
225 12 0.01
226 16 0.01
227 16 0.01
228 24 0.02
229 6 0.00
230 84 0.06
231 25 0.02
232 25 0.02
233 5 0.00
234 24 0.02
235 134 0.10
236 4 0.00
237 9 0.01
238 67 0.05
239 12 0.01
240 35 0.03
241 2 0.00
242 44 0.03
243 64 0.05
244 232 0.17
245 100 0.07
246 13 0.01
247 180 0.13
248 91 0.07
249 159 0.11
250 7 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (243 bp):
AGATCACACTCTGTTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCAC
ACTCTGCTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTCGCTAGGGTTT
GGGAATGAAGAGGAAAAGGGGGAGGGGACACATGCCTTACGAGGTGCTTTGTTGAATTTTAAGGG
ACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACACCAATACCTT
Found at i:57303 original size:492 final size:488
Alignment explanation
Indices: 56278--58276 Score: 1737
Period size: 492 Copynumber: 4.1 Consensus size: 488
56268 CTTTAAAGAA
* * * * * **
56278 AGATCACACTCTACTTTCAGGGAGGCTTGGATGTGACTACCAAAGGAAAGTTTAAATTGCATCAC
1 AGATCACACTTTACTTTCAGGAAGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAACATCAC
* * * * * *
56343 ACTTTGCTTT-TAGAAGGATTGGGTGCTCAATAAATTAGATCAAACTTTGCTTTTGCCAAGGTTT
66 ACTTTGCTTTATAGAAGGATTGGGTGCTCAATAACTTAGATCAAACCTT-ATTTCGCTAGGGTTT
** *
56407 GGGAATGAAGA-GAAAGAGGGGGCGGGGACATGTGCCTTCCCTACAGGGTGCTTTATTGAATTTT
130 GGGAATGAAGAGGAAA-AGGGGGTAGGGACA--TGCCTTCCCTACAGGGTGCTTTGTTGAATTTT
* * * *
56471 AAGGGACATTGAGAGATATTTGAATTTTCCTTTGCTGGTTACATCCAATAACTTAGACCACACTC
192 AAGGGACATTGAGAGCTATTTGAACTTTCCTTTGCTGGTTACA-CCAATACCTTAGATCACACTC
* * * * * * **
56536 TGTTTTCAAGAAGGATTTGATGTGATTACCAAAGGAAACTACAAATAGCATCATGCTCTACTTTC
256 TATTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCACACTCTACTTTC
* * * * * * * *
56601 AAGAAGGATTGGGTGATTTATAACTTAGATCAAGCTATTGCTTTTGTTAGGGTTTGGGAATCAAG
321 ATGAAAGATTGGGTG-CTCA-AACTTAGATCAA-CT-TTGCTTTCGCTAGGGTTTAGGAATGAAG
* ** * *
56666 AGGAAAAGGGAGAGGGGACA-C-A---TGCTTACGAAGTGCTTTATTGAATTTTAAGGGACATTG
382 AGGAAAAGGG-GAGGGGACACCTACCTTCCTTACGGGGTGCTTTATTGAATATTAAGAGACATTG
* ** * * * *
56726 AGAGCAATTCAAACTTTCTTTTGCTGGCTACACCCAGTACTTT
446 AGAGCTATTTGAACTTTCCTTTGCTGGTTACACCCAATACCTT
* *
56769 AGATCACAGTTTACTTTCA-GATAGGATTGGGTATGACTACCAAAGGAAAGTTCAAATAACATCA
1 AGATCACACTTTACTTTCAGGA-AGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAACATCA
* * *
56833 CACTTTGATTTCATA-AAGGATTGGGTGCTCAATAACTTAGAACAAACCTTACTTTCACTAGGGT
65 CACTTTGCTTT-ATAGAAGGATTGGGTGCTCAATAACTTAGATCAAACCTTA-TTTCGCTAGGGT
* * *
56897 TTGGGAATAAAGA-GAAAGAGGGGGTAGGGACACTTGACTTCCCTACAGGTTGCTTTGTTGAA-T
128 TTGGGAATGAAGAGGAAA-AGGGGGTAGGGACA--TGCCTTCCCTACAGGGTGCTTTGTTGAATT
* * * ** * *
56960 TTAAGGGACATTAAAAGCTATTTGAACTTTCTTTTGCTGGTTACACCTAATATTTTAGTTCACAT
190 TTAAGGGACATTGAGAGCTATTTGAACTTTCCTTTGCTGGTTACACC-AATACCTTAGATCACAC
* * *
57025 TCTGCTTTT-AGGAAGGAATGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCACACTCTGCT
254 TCT-ATTTTCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCACACTCTACT
* * * * *
57089 TTCA-GAAAAGATTGGGTGCTC-AACTTAGATCGAACTTTACTTTCACTACGATTTATGAATGAA
318 TTCATG-AAAGATTGGGTGCTCAAACTTAGATC-AACTTTGCTTTCGCTAGGGTTTAGGAATGAA
* ** *
57152 GAAGAAAAGGGGTAGGGGACAATTACCTTCCTTACGGGGTGCTTTGTTGAATATTAAGAGACATT
381 GAGGAAAAGGGG-AGGGGACACCTACCTTCCTTACGGGGTGCTTTATTGAATATTAAGAGACATT
* * * * * * *
57217 GAGAGTTGTTTGAACTTTCCTTTACTTGTTATATCGAATACCTT
445 GAGAGCTATTTGAACTTTCCTTTGCTGGTTACACCCAATACCTT
* * * * *
57261 AAATCACACTTTACTTTCACGAATGATTGAGTGTGGCTACCAAAGGAAAGTTCAAAT---A--AC
1 AGATCACACTTTACTTTCAGGAAGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAACATCAC
* * ** * * *
57321 ACTCTGCTTTCA-GGAAGGATTGGGTGCTCAATAACTTAGATCAAAATTTTATTTTGCTA-GATA
66 ACTTTGCTTT-ATAGAAGGATTGGGTGCTCAATAACTTAGATC-AAACCTTATTTCGCTAGGGTT
* * *
57384 TGAGAATGAAGAGGAAAAGGTGGGAAGGGGCA-G---------CAGGGTGCTTTGTTGAATTTTA
129 TGGGAATGAAGAGGAAAAGG-GGGTAGGGACATGCCTTCCCTACAGGGTGCTTTGTTGAATTTTA
* * * * * * *
57439 TGAGACA-CGAGAGTTATTTGAATTTTCCTTTACTAGTTACACCCAATACCTTAGATCACACTCT
193 AGGGACATTGAGAGCTATTTGAACTTTCCTTTGCTGGTTACA-CCAATACCTTAGATCACACTCT
* * *
57503 A-TTTCTAGGAAGGATTTGGTGTGAATACCAAAGGAAAGTTCAAATAGCATCACACACTACTTTC
257 ATTTTC-AGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCACACTCTACTTTC
* *
57567 ATGAAGGATTGGGTGCTCAATAACTTAGATCATATTTTGCTTTCGCTAGGGTTTA-GAATGAAGA
321 ATGAAAGATTGGGTGCTC-A-AACTTAGATCA-ACTTTGCTTTCGCTAGGGTTTAGGAATGAAGA
* * * *
57631 GGAAAAGGGGAAGGGACACCTGCCTTTCC-TAC-GGCTG--TT-TTG----TT--GA-ATATTGA
383 GGAAAAGGGGAGGGGACACCTACC-TTCCTTACGGGGTGCTTTATTGAATATTAAGAGACATTGA
* * *
57684 GAGCTATTTGAACTTTTCTTGGCTGGTTACACCTAATACCTT
447 GAGCTATTTGAACTTTCCTTTGCTGGTTACACCCAATACCTT
* * * * * *
57726 AGATCACACTTTGCTTTTAGGAAAGATTGGGCGTGATTA-CAAAGGAAAGTTTAAATAACATCAC
1 AGATCACACTTTACTTTCAGGAAGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAACATCAC
* * * * **
57790 TCTGTT--TTTA-AGGAGGACTGGGTG----ATAACTTAGATTAAA-CTT-TTTCTTTAGGGTTT
66 ACT-TTGCTTTATAGAAGGATTGGGTGCTCAATAACTTAGATCAAACCTTATTTCGCTAGGGTTT
* * * *
57846 GGGAATGAAGAGGAAAAGGGGGTGGGGAAAACTGCCTTCCCTAC-GAGGTGTTTTGTTGACTTTT
130 GGGAATGAAGAGGAAAAGGGGGTAGGG-ACA-TGCCTTCCCTACAG-GGTGCTTTGTTGAATTTT
* * * *
57910 AAGGGACAATGAGAGCTATTTAAACTTTCTTTTGCTGGTTACACCAAACACCTTAGATCACACTC
192 AAGGGACATTGAGAGCTATTTGAACTTTCCTTTGCTGGTTACACC-AATACCTTAGATCACACTC
** * * *
57975 TATTTTCAGGAAGGATTGGGTGTGACTT-CCAAATAAAAGTTCAAAATAGCATTACACTATGCTT
256 TATTTTCAGGAAGGATTGGGTGTGA-TTACCAAAGGAAAGTTC-AAATAGCATCACACTCTACTT
* *
58039 TCATGAAAGATTAGGTGCTCAATAACTT-GATCAAACTTTGCTTTCGCTATGGTTT-GGAAATGA
319 TCATGAAAGATTGGGTGCTC-A-AACTTAGATC-AACTTTGCTTTCGCTAGGGTTTAGG-AATGA
* * * * *
58102 AGAGGAAGAGAGGAGAGGGGATACCTGCCTTCCCTACGGGGAGCTTTATTGAAT-TATAAG-GAA
380 AGAGGAA-A-AGGGGAGGGGACACCTACCTTCCTTACGGGGTGCTTTATTGAATAT-TAAGAG-A
* * ** * *
58165 CACTGAGAACTATTTGAACTTTTTTTTTCTGGTTACACCCACTACCTT
441 CATTGAGAGCTATTTGAACTTTCCTTTGCTGGTTACACCCAATACCTT
* * * *
58213 AGATCACACTATGCTTTCAGGAAGGATTGGGTGTGACTACTAAAGGAAAGTTCAAATAGCATCA
1 AGATCACACTTTACTTTCAGGAAGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAACATCA
58277 GGAAGGATTG
Statistics
Matches: 1220, Mismatches: 215, Indels: 149
0.77 0.14 0.09
Matches are distributed among these distances:
460 11 0.01
461 24 0.02
462 3 0.00
463 12 0.01
464 16 0.01
465 69 0.06
466 2 0.00
467 13 0.01
468 5 0.00
469 4 0.00
470 1 0.00
471 1 0.00
472 28 0.02
473 105 0.09
474 61 0.05
475 135 0.11
476 44 0.04
477 26 0.02
478 27 0.02
479 2 0.00
480 3 0.00
483 1 0.00
484 2 0.00
486 17 0.01
487 169 0.14
488 39 0.03
489 4 0.00
490 5 0.00
491 180 0.15
492 207 0.17
493 4 0.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (488 bp):
AGATCACACTTTACTTTCAGGAAGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAACATCAC
ACTTTGCTTTATAGAAGGATTGGGTGCTCAATAACTTAGATCAAACCTTATTTCGCTAGGGTTTG
GGAATGAAGAGGAAAAGGGGGTAGGGACATGCCTTCCCTACAGGGTGCTTTGTTGAATTTTAAGG
GACATTGAGAGCTATTTGAACTTTCCTTTGCTGGTTACACCAATACCTTAGATCACACTCTATTT
TCAGGAAGGATTGGGTGTGATTACCAAAGGAAAGTTCAAATAGCATCACACTCTACTTTCATGAA
AGATTGGGTGCTCAAACTTAGATCAACTTTGCTTTCGCTAGGGTTTAGGAATGAAGAGGAAAAGG
GGAGGGGACACCTACCTTCCTTACGGGGTGCTTTATTGAATATTAAGAGACATTGAGAGCTATTT
GAACTTTCCTTTGCTGGTTACACCCAATACCTT
Found at i:57499 original size:230 final size:231
Alignment explanation
Indices: 57188--57645 Score: 579
Period size: 230 Copynumber: 2.0 Consensus size: 231
57178 CTTCCTTACG
* * * * * *
57188 GGGTGCTTTGTTGAATATTAAGAGACATTGAGAGTTGTTTGAACTTTCCTTTACTTGTTATATCG
1 GGGTGCTTTGTTGAATATTAAGAGACATCGAGAGTTATTTGAACTTTCCTTTACTAGTTACACCC
* * **
57253 AATACCTTAAATCACACTTTACTTTC-ACGAATGA-TTGAGTGTGGCTACCAAAGGAAAGTTCAA
66 AATACCTTAAATCACACTCTA-TTTCTACGAAGGATTTG-GTGTGAATACCAAAGGAAAGTTCAA
* * *
57316 AT-A-ACACTCTGCTTTCAGGAAGGATTGGGTGCTCAATAACTTAGATCAAAATTTT-ATTTTGC
129 ATAACACACACTACTTTCAGGAAGGATTGGGTGCTCAATAACTTAGATC-AAATTTTGATTTCGC
57378 TA-GATATGAGAATGAAGAGGAAAAGGTGGGAAGGGGCAGCA
193 TAGGAT-TGAGAATGAAGAGGAAAA-G-GGGAAGGGGCAGCA
* * *
57419 GGGTGCTTTGTTGAATTTTATGAGACA-CGAGAGTTATTTGAATTTTCCTTTACTAGTTACACCC
1 GGGTGCTTTGTTGAATATTAAGAGACATCGAGAGTTATTTGAACTTTCCTTTACTAGTTACACCC
* *
57483 AATACCTTAGATCACACTCTATTTCTAGGAAGGATTTGGTGTGAATACCAAAGGAAAGTTCAAAT
66 AATACCTTAAATCACACTCTATTTCTACGAAGGATTTGGTGTGAATACCAAAGGAAAGTTCAAAT
* * *
57548 AGCATCACACACTACTTTCATGAAGGATTGGGTGCTCAATAACTTAGATCATATTTTGCTTTCGC
131 A--A-CACACACTACTTTCAGGAAGGATTGGGTGCTCAATAACTTAGATCAAATTTTGATTTCGC
* *
57613 TAGGGTTTAGAATGAAGAGGAAAAGGGGAAGGG
193 TAGGATTGAGAATGAAGAGGAAAAGGGGAAGGG
57646 ACACCTGCCT
Statistics
Matches: 195, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
229 4 0.02
230 80 0.41
231 28 0.14
233 9 0.05
234 7 0.04
235 65 0.33
236 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (231 bp):
GGGTGCTTTGTTGAATATTAAGAGACATCGAGAGTTATTTGAACTTTCCTTTACTAGTTACACCC
AATACCTTAAATCACACTCTATTTCTACGAAGGATTTGGTGTGAATACCAAAGGAAAGTTCAAAT
AACACACACTACTTTCAGGAAGGATTGGGTGCTCAATAACTTAGATCAAATTTTGATTTCGCTAG
GATTGAGAATGAAGAGGAAAAGGGGAAGGGGCAGCA
Found at i:58181 original size:722 final size:720
Alignment explanation
Indices: 56402--58276 Score: 1787
Period size: 722 Copynumber: 2.6 Consensus size: 720
56392 CTTTTGCCAA
* ** *
56402 GGTTTGGGAATGAAGAGAAAGAGGGGGCGGGGACATGTGCCTTCCCTAC-AGGGTGCTTTATTGA
1 GGTTTGGGAATGAAGAGAAA-AGGGGGTGGGGACAACTGCCTTCCCTACGA-GGTGCTTTGTTGA
* *
56466 ATTTTAAGGGACATTGAGAGATATTTGAATTTTCCTTTGCTGGTTACATCCAATAA-CTTAGACC
64 ATTTTAAGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACA-CCAA-AACCTTAGATC
* * * * *
56530 ACACTCTGTTTTCAAGAAGGATTTGATGTGA-TTACCAAAGGAAACTACAAATAGCAT-CATGCT
127 ACACTCTATTTTCAAGAAGGATTGGGTGTGACTT-CCAAAGGAAAGTTCAAATAGCATACA--CT
* * ** * *
56593 CTACTTTCAAGAAGGATTGGGTGATTTATAACTTAGATCAAGCTATTGCTTTTGTTAGGGTTTGG
189 CTGCTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACT-TTGCTTTTGCTA-GGTTTGG
* * ** *
56658 GAATCAAGAGGAAA-AGGGAGAGGGGACACATGCT-TACGAAGTGCTTTATTGAATTTTAAGGGA
252 AAATGAAGAGGAAAGA-GGAGAGGGGA-ACATGCTCTACGGGGTGCTTTATTGAA-TTTAAGGAA
* * ** * * * * * * *
56721 CATTGAGAGCAATTCAAACTTTCTTTTGCTGGCTACACCCAGTACTTTAGATCACAGTTTACTTT
314 CACTGAGAGCTATTTGAATTTTCTTTTACTGGTTACACCCAATACCTTAGATCACACTATA-TTT
* * **
56786 CA-GATAGGATTGGGTATGACTACCAAAGGAAAGTTCAAATAACATCACACTTTGATTTCATAAA
378 CAGGA-AGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAGCATCACACACTGATTTCATAAA
*
56850 GGATTGGGTGCTCAATAACTTAGAACAAACCTTACTTTCACTAGGGTTTGGGAATAAAGAGAAAG
442 GGATTGGGTGCTCAATAACTTAGAACAAACCTTACTTTCACTAGGGTTTGAGAATAAAGAGAAAG
* * *
56915 AGGGGGTAGGGACACTTGACTTCCCTACAGGTTGCTTTGTTGAATTTAAGGGACATTAAAAGCTA
507 AGGGGGAAGGGACACCTGACTTCCCTACAGGCTGCTTTGTTGAA-TT-----A-ATTAAAAGCTA
* ** * *
56980 TTTGAACTTTCTTTTGCTGGTTACACCTAATATTTTAGTTCACATTCTGCTTTTAGGAAGGAATG
565 TTTGAACTTTCTTTGGCTGGTTACACCTAATACCTTAGATCACATTCTGCTTTTAGGAAAGAATG
* * * * *
57045 GGTGTGATTACCAAAGGAAAGTTCAAATAGCATCACACTCTGCTTTCAGAAAAGATTGGGTGCTC
630 GGCGTGATTACCAAAGGAAAGTTCAAATAACAT-ACACTCTGCTTTAAGAAAAGACTGGGTGATC
*
57110 AACTTAGATCGAACTTTACTTTCACTAC
694 AACTTAGATCAAACTTTA-TTTCACTAC
* ** * * * *
57138 GATTTATGAATGAAGAAGAAAA-GGGGTAGGGGACAATTACCTTCCTTACGGGGTGCTTTGTTGA
1 GGTTTGGGAATGAAG-AGAAAAGGGGGT-GGGGACAACTGCCTTCCCTACGAGGTGCTTTGTTGA
* * * * * * * * * *
57202 ATATTAAGAGACATTGAGAGTTGTTTGAACTTTCCTTTACTTGTTATATCGAATACCTTAAATCA
64 ATTTTAAGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACA-CCAAAACCTTAGATCA
* * * * * * *
57267 CACTTTACTTTCACGAATGATTGAGTGTGGCTACCAAAGGAAAGTTCAAAT---A-ACACTCTGC
128 CACTCTATTTTCAAGAAGGATTGGGTGTGACTTCCAAAGGAAAGTTCAAATAGCATACACTCTGC
* * ** * *
57328 TTTCAGGAAGGATTGGGTGCTCAATAACTTAGATCAAAATTTTATTTTGCTAGATAT-GAGAATG
193 TTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTTGCTAGGTTTGGA-AATG
* * * *
57392 AAGAGGAAA-AGGTGGGAAGGGG--CA-G--C-A--GGGTGCTTTGTTGAATTTTATGAGACAC-
257 AAGAGGAAAGA-G-GAG-AGGGGAACATGCTCTACGGGGTGCTTTATTGAATTTAAGGA-ACACT
* * * *
57447 GAGAGTTATTTGAATTTTCCTTTACTAGTTACACCCAATACCTTAGATCACACTCTATTTCTAGG
318 GAGAGCTATTTGAATTTTCTTTTACTGGTTACACCCAATACCTTAGATCACACTATATTTC-AGG
* * *
57512 AAGGATTTGGTGTGAATACCAAAGGAAAGTTCAAATAGCATCACACACT-ACTTTCATGAAGGAT
382 AAGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAGCATCACACACTGA-TTTCATAAAGGAT
* * ** * * *
57576 TGGGTGCTCAATAACTTAGATCATATTTTGCTTTCGCTAGGGTTT-AGAATGAAGAGGAAA-A-G
446 TGGGTGCTCAATAACTTAGAACAAACCTTACTTTCACTAGGGTTTGAGAATAAAGA-GAAAGAGG
* * * * *
57638 GGGAAGGGACACCTGCCTTTCCTAC-GGCTGTTTTGTTGAA-T-ATTGAGAGCTATTTGAACTTT
510 GGGAAGGGACACCTGACTTCCCTACAGGCTGCTTTGTTGAATTAATTAAAAGCTATTTGAACTTT
*
57700 -TCTTGGCTGGTTACACCTAATACCTTAGATCACACTT-TGCTTTTAGGAAAGATTGGGCGTGAT
575 CT-TTGGCTGGTTACACCTAATACCTTAGATCACA-TTCTGCTTTTAGGAAAGAATGGGCGTGAT
* * * *
57763 TA-CAAAGGAAAGTTTAAATAACAT-CACTCTGTTTTTAAG-GAGGACTGGGTGAT-AACTTAGA
638 TACCAAAGGAAAGTTCAAATAACATACACTCTG-CTTTAAGAAAAGACTGGGTGATCAACTTAGA
* ** *
57824 TTAAAC-TT-TTTCTTTAG
702 TCAAACTTTATTTCACTAC
* * *
57841 GGTTTGGGAATGAAGAGGAAAAGGGGGTGGGGAAAACTGCCTTCCCTACGAGGTGTTTTGTTGAC
1 GGTTTGGGAATGAAGA-GAAAAGGGGGTGGGGACAACTGCCTTCCCTACGAGGTGCTTTGTTGAA
* * * *
57906 TTTTAAGGGACAATGAGAGCTATTTAAACTTTCTTTTGCTGGTTACACCAAACACCTTAGATCAC
65 TTTTAAGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACACCAAA-ACCTTAGATCAC
* ** *
57971 ACTCTATTTTCAGGAAGGATTGGGTGTGACTTCCAAATAAAAGTTCAAAATAGCATTACACTATG
129 ACTCTATTTTCAAGAAGGATTGGGTGTGACTTCCAAAGGAAAGTTC-AAATAGCA-TACACTCTG
* * * *
58036 CTTTCATGAAAGATTAGGTGCTCAATAACTT-GATCAAACTTTGCTTTCGCTATGGTTTGGAAAT
192 CTTTCAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTTGCTA-GGTTTGGAAAT
* *
58100 GAAGAGGAAGAGAGGAGAGGGGATACCTGCCTTCCCTACGGGGAGCTTTATTGAATTATAAGGAA
256 GAAGAGGAA-AGAGGAGAGGGGA-ACATG-C-T--CTACGGGGTGCTTTATTGAATT-TAAGGAA
* * * *
58165 CACTGAGAACTATTTGAACTTTT-TTTTTCTGGTTACACCCACTACCTTAGATCACACTATGCTT
314 CACTGAGAGCTATTTGAA-TTTTCTTTTACTGGTTACACCCAATACCTTAGATCACACTAT-ATT
*
58229 TCAGGAAGGATTGGGTGTGACTACTAAAGGAAAGTTCAAATAGCATCA
377 TCAGGAAGGATTGGGTGTGACTACCAAAGGAAAGTTCAAATAGCATCA
58277 GGAAGGATTG
Statistics
Matches: 920, Mismatches: 171, Indels: 110
0.77 0.14 0.09
Matches are distributed among these distances:
702 4 0.00
703 138 0.15
704 9 0.01
705 2 0.00
706 12 0.01
707 18 0.02
708 27 0.03
709 73 0.08
710 76 0.08
711 4 0.00
712 1 0.00
717 1 0.00
718 1 0.00
719 14 0.02
720 22 0.02
721 33 0.04
722 238 0.26
723 25 0.03
725 1 0.00
727 1 0.00
728 3 0.00
729 18 0.02
730 11 0.01
731 44 0.05
733 3 0.00
735 5 0.01
736 130 0.14
737 6 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (720 bp):
GGTTTGGGAATGAAGAGAAAAGGGGGTGGGGACAACTGCCTTCCCTACGAGGTGCTTTGTTGAAT
TTTAAGGGACATTGAGAGATATTTGAACTTTCCTTTGCTGGTTACACCAAAACCTTAGATCACAC
TCTATTTTCAAGAAGGATTGGGTGTGACTTCCAAAGGAAAGTTCAAATAGCATACACTCTGCTTT
CAAGAAGGATTGGGTGCTCAATAACTTAGATCAAACTTTGCTTTTGCTAGGTTTGGAAATGAAGA
GGAAAGAGGAGAGGGGAACATGCTCTACGGGGTGCTTTATTGAATTTAAGGAACACTGAGAGCTA
TTTGAATTTTCTTTTACTGGTTACACCCAATACCTTAGATCACACTATATTTCAGGAAGGATTGG
GTGTGACTACCAAAGGAAAGTTCAAATAGCATCACACACTGATTTCATAAAGGATTGGGTGCTCA
ATAACTTAGAACAAACCTTACTTTCACTAGGGTTTGAGAATAAAGAGAAAGAGGGGGAAGGGACA
CCTGACTTCCCTACAGGCTGCTTTGTTGAATTAATTAAAAGCTATTTGAACTTTCTTTGGCTGGT
TACACCTAATACCTTAGATCACATTCTGCTTTTAGGAAAGAATGGGCGTGATTACCAAAGGAAAG
TTCAAATAACATACACTCTGCTTTAAGAAAAGACTGGGTGATCAACTTAGATCAAACTTTATTTC
ACTAC
Found at i:74020 original size:2 final size:2
Alignment explanation
Indices: 74008--74048 Score: 66
Period size: 2 Copynumber: 20.5 Consensus size: 2
73998 AAACAGAGCC
74008 AG AG A- AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CAG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -AG AG A
74049 TTCAAATCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 1 0.03
2 34 0.92
3 2 0.05
ACGTcount: A:0.51, C:0.02, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Done.