Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000519.1 Hibiscus syriacus cultivar Beakdansim tig00000986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92596

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8842--9965
233
4.8
233
87
1
1520
33
17
15
33
1.92
8842--9965
467
2.4
464
87
3
1580
33
17
15
33
1.92
9871--10029
42
3.8
42
77
2
160
31
20
18
29
1.96
9872--10041
83
2.0
83
93
0
286
31
20
20
28
1.97
9632--10280
316
2.1
314
88
2
960
33
18
17
31
1.94
9948--11116
232
5.0
232
86
2
1605
33
17
16
32
1.92
9406--10513
548
2.0
550
91
1
1787
33
18
16
31
1.93
10413--10513
42
2.4
41
78
3
112
33
22
20
22
1.97
23843--23876
17
2.0
17
88
0
50
76
0
8
14
1.01
24352--24401
24
2.1
24
85
7
66
58
12
2
28
1.45
26721--26763
14
3.0
15
83
10
54
76
6
0
16
0.99
27703--27752
24
2.1
24
85
7
66
58
12
2
28
1.45
35116--35142
12
2.2
12
100
0
54
33
18
14
33
1.92
37214--37240
12
2.2
12
100
0
54
33
18
14
33
1.92
49368--49486
60
2.0
60
85
3
159
26
25
24
23
2.00
50379--50421
15
2.8
15
82
3
50
69
0
0
30
0.88
52144--52191
25
1.9
25
95
0
87
29
43
10
16
1.81
53640--53758
32
3.7
32
74
6
107
41
21
11
25
1.87
53789--53838
16
2.6
21
67
32
56
36
40
12
12
1.79
53790--53833
16
2.6
17
85
7
63
36
38
13
11
1.81
56825--56863
17
2.4
17
91
4
62
48
5
0
46
1.24
57539--57583
20
2.2
20
84
11
56
60
2
2
35
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57556--57606
26
2.0
25
92
3
84
62
1
1
33
1.17
62758--62829
2
36.0
2
100
0
144
50
0
0
50
1.00
63134--63184
2
25.5
2
100
0
102
50
0
0
49
1.00
63432--63550
30
3.9
30
83
4
123
26
19
20
34
1.96
63432--63550
62
1.9
62
81
3
141
26
19
20
34
1.96
65374--65435
24
2.6
23
84
5
70
38
37
9
14
1.79
65997--66091
32
2.9
32
81
12
113
28
14
4
52
1.60
66290--66373
30
2.8
30
77
10
91
22
20
5
51
1.69
66303--66343
16
2.7
15
77
7
55
17
17
7
58
1.60
66803--66861
28
2.1
29
84
9
77
20
5
3
71
1.20
68929--69017
43
2.0
44
89
8
137
37
20
15
26
1.93
68940--69017
22
3.6
22
80
1
95
37
20
14
28
1.91
69038--69074
19
1.9
19
89
10
58
37
16
24
21
1.93
70558--70596
3
13.3
3
86
5
53
66
2
30
0
1.05
72485--72570
22
3.9
22
87
0
127
29
24
19
26
1.99
72485--72570
44
2.0
44
92
0
145
29
24
19
26
1.99
75470--75536
25
2.8
24
86
13
93
35
5
1
56
1.33
78123--78305
83
2.2
83
89
1
269
34
28
15
20
1.94
81039--81110
25
2.8
25
80
2
81
47
1
5
45
1.34
81061--81149
25
3.7
23
83
8
115
48
3
1
47
1.26

Tables:   1

The End!