genome.fa.s5191.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005191.1 Hibiscus syriacus cultivar Beakdansim tig00011726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81344

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
857--917	21	3.0	20	71	7	59	19	18	37	24	1.94
1362--1425	18	3.4	19	85	8	78	43	28	17	10	1.82
1416--1471	14	3.7	14	78	17	58	44	23	19	12	1.84
1398--1488	32	2.8	32	91	1	146	46	21	19	12	1.83
1379--1493	18	6.8	18	79	16	120	45	23	20	11	1.83
1380--1471	50	1.9	46	84	8	121	44	25	19	10	1.83
1489--1579	33	2.8	32	88	8	130	8	18	28	43	1.80
1551--1596	19	2.4	19	88	0	65	13	17	26	43	1.85
1639--2021	186	2.0	187	95	4	684	46	18	12	22	1.83
2026--2075	18	2.8	18	100	0	100	42	10	20	28	1.84
3715--3804	14	5.7	14	74	23	81	42	23	25	8	1.83
3707--3820	33	3.5	33	93	0	201	45	21	23	9	1.81
3729--3820	19	5.4	19	69	24	69	44	22	22	9	1.82
3821--3905	38	2.4	36	86	9	113	10	22	22	44	1.83
3851--3905	19	2.9	19	75	0	65	12	23	20	43	1.86
3997--4067	33	2.2	33	94	0	124	47	16	23	11	1.79
4241--4294	21	2.5	22	78	3	65	20	16	38	24	1.92
4439--4632	20	9.6	20	82	5	221	19	19	25	35	1.95
4439--4632	60	3.2	60	83	0	253	19	19	25	35	1.95
4619--4701	21	4.0	21	73	6	78	25	16	24	33	1.96
4599--4697	42	2.4	43	77	11	100	21	18	23	37	1.94
5231--5280	19	2.5	20	90	3	75	42	24	18	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5267--5317	19	2.7	19	90	3	77	49	19	19	11	1.79
5352--5559	20	10.4	20	97	0	389	35	15	24	24	1.94
5663--5694	6	5.5	6	96	3	57	31	53	15	0	1.43
6402--6454	6	8.8	6	100	0	106	0	15	50	33	1.44
6531--6574	20	2.2	20	91	0	70	11	18	15	54	1.70
6561--6856	20	14.6	20	76	7	177	19	22	18	39	1.92
6563--6776	40	5.2	40	82	5	230	21	23	17	37	1.93
6563--6774	83	2.6	83	86	2	277	21	24	17	37	1.94
6767--6819	21	2.7	19	83	11	70	11	18	18	50	1.76
6543--6837	83	3.6	83	78	4	235	19	22	17	41	1.91
6807--6856	19	2.6	19	87	6	66	16	20	24	40	1.91
9245--9319	2	37.5	2	100	0	150	50	0	0	49	1.00
24564--24650	23	3.7	23	76	14	88	26	26	26	20	1.99
36982--37074	44	2.2	41	87	9	127	35	4	25	34	1.76
36984--37074	19	4.4	20	79	17	114	36	4	26	32	1.76
39208--39246	19	2.1	19	85	0	51	64	2	0	33	1.08
47562--47903	150	2.3	149	75	10	354	28	21	17	31	1.97
56496--56520	4	6.2	4	100	0	50	76	0	24	0	0.80
62775--62869	49	2.0	48	95	2	172	45	15	18	20	1.86
65283--65418	20	7.2	20	70	12	108	46	13	5	33	1.68
65282--65368	40	2.2	40	93	0	156	48	12	5	33	1.65
65320--65419	52	1.9	52	97	0	191	47	14	6	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69968--70104	20	7.2	20	69	14	101	46	12	5	35	1.66
69967--70105	41	3.1	41	74	20	136	47	12	5	34	1.65
70005--70105	52	1.9	53	91	2	168	47	11	5	34	1.65
75211--75251	21	2.0	21	85	9	57	21	24	14	39	1.91
75331--75413	42	2.1	39	84	6	103	43	3	1	51	1.26
75323--75408	39	2.2	39	76	13	88	39	3	3	53	1.35
78820--78862	22	2.0	22	85	0	59	37	23	11	27	1.89

Tables:   1

The End!