Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005192.1 Hibiscus syriacus cultivar Beakdansim tig00011731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95424

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1373--1403
10
3.1
10
95
0
53
58
0
19
22
1.40
5141--5243
36
2.9
36
94
0
170
28
15
13
42
1.85
11178--11225
24
2.0
24
95
0
87
43
20
4
31
1.71
13588--13614
7
3.9
7
100
0
54
29
40
14
14
1.86
22555--22594
2
20.0
2
90
10
64
50
2
0
47
1.14
22548--22593
14
3.4
13
88
8
65
54
2
0
43
1.12
28762--28797
2
18.5
2
94
5
65
50
0
0
50
1.00
31472--31545
39
1.9
38
94
2
130
39
10
24
25
1.88
40994--41032
18
2.2
18
85
0
51
48
0
0
51
1.00
46866--46940
35
2.1
36
92
2
125
30
8
40
21
1.82
47010--47036
2
13.5
2
100
0
54
48
0
0
51
1.00
47770--47799
15
2.0
15
100
0
60
20
33
40
6
1.78
53814--53852
17
2.4
17
95
4
71
51
5
0
43
1.24
54041--54095
21
2.6
20
91
5
83
29
21
25
23
1.99
54465--54523
29
2.0
29
96
0
109
50
13
11
23
1.74
59157--59238
24
3.2
24
78
17
94
47
10
14
26
1.77
59156--59235
29
3.0
28
80
14
105
47
11
15
26
1.78
61952--61996
21
2.1
21
84
8
56
51
8
11
28
1.68
66867--66942
38
2.0
38
92
5
127
42
14
21
22
1.89
71740--71811
38
1.9
37
83
5
92
48
4
2
44
1.36
72251--72289
21
1.9
19
85
10
51
20
12
2
64
1.40
74098--74132
17
2.0
18
88
5
54
42
5
5
45
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74285--74319
3
11.3
3
93
6
61
62
0
0
37
0.95
74347--74400
24
2.2
24
83
6
65
38
1
3
55
1.28
74591--74639
20
2.4
21
83
6
66
51
0
2
46
1.12
76628--76791
83
2.0
84
92
1
276
18
23
23
34
1.96
78324--78389
33
2.0
33
90
0
105
18
6
36
39
1.75
85563--85671
38
2.9
38
88
0
164
21
11
26
40
1.88
86607--86816
61
3.5
62
82
8
215
27
9
12
50
1.70
86657--86872
61
3.7
60
81
5
197
25
8
14
50
1.71
89522--89565
2
22.0
2
100
0
88
50
0
0
50
1.00
91123--91412
153
1.9
147
84
6
386
31
14
17
37
1.89

Tables:   1

The End!